HEADER HYDROLASE/HYDROLASE INHIBITOR 29-JUL-11 3T73 TITLE THERMOLYSIN IN COMPLEX WITH UBTLN22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE FORM (UNP RESIDUES 233-548); COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS PROTEASE, METALLOPROTEASE, HYDROLYSIS OF PEPTIDE BONDS, KEYWDS 2 PHOSPHORAMIDON, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BIELA,A.HEINE,G.KLEBE REVDAT 3 13-SEP-23 3T73 1 REMARK REVDAT 2 12-FEB-14 3T73 1 JRNL REVDAT 1 01-AUG-12 3T73 0 JRNL AUTH A.BIELA,M.BETZ,A.HEINE,G.KLEBE JRNL TITL WATER MAKES THE DIFFERENCE: REARRANGEMENT OF WATER SOLVATION JRNL TITL 2 LAYER TRIGGERS NON-ADDITIVITY OF FUNCTIONAL GROUP JRNL TITL 3 CONTRIBUTIONS IN PROTEIN-LIGAND BINDING. JRNL REF CHEMMEDCHEM V. 7 1423 2012 JRNL REFN ISSN 1860-7179 JRNL PMID 22733601 JRNL DOI 10.1002/CMDC.201200206 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 42664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6781 - 3.9451 1.00 3058 162 0.1533 0.1648 REMARK 3 2 3.9451 - 3.1316 1.00 2869 151 0.1397 0.1459 REMARK 3 3 3.1316 - 2.7359 0.99 2820 147 0.1422 0.1674 REMARK 3 4 2.7359 - 2.4857 0.98 2771 154 0.1407 0.1560 REMARK 3 5 2.4857 - 2.3076 0.98 2747 142 0.1371 0.1651 REMARK 3 6 2.3076 - 2.1715 0.99 2743 146 0.1383 0.1736 REMARK 3 7 2.1715 - 2.0628 0.99 2708 167 0.1329 0.1597 REMARK 3 8 2.0628 - 1.9730 0.98 2709 141 0.1346 0.1551 REMARK 3 9 1.9730 - 1.8970 0.96 2697 118 0.1304 0.1742 REMARK 3 10 1.8970 - 1.8316 0.95 2608 135 0.1300 0.1707 REMARK 3 11 1.8316 - 1.7743 0.96 2648 134 0.1391 0.1842 REMARK 3 12 1.7743 - 1.7236 0.95 2599 136 0.1464 0.2057 REMARK 3 13 1.7236 - 1.6782 0.93 2558 137 0.1619 0.1838 REMARK 3 14 1.6782 - 1.6373 0.92 2525 136 0.1641 0.2094 REMARK 3 15 1.6373 - 1.6000 0.90 2469 129 0.1731 0.1906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 47.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.88730 REMARK 3 B22 (A**2) : -1.88730 REMARK 3 B33 (A**2) : 3.77460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2657 REMARK 3 ANGLE : 1.055 3675 REMARK 3 CHIRALITY : 0.075 383 REMARK 3 PLANARITY : 0.005 470 REMARK 3 DIHEDRAL : 14.803 934 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:178) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7026 -32.0052 -0.8949 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.0911 REMARK 3 T33: 0.0674 T12: -0.0111 REMARK 3 T13: -0.0170 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4191 L22: 0.2944 REMARK 3 L33: 0.1960 L12: -0.0237 REMARK 3 L13: -0.1630 L23: 0.0199 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.0243 S13: -0.0004 REMARK 3 S21: -0.0288 S22: -0.0140 S23: 0.0129 REMARK 3 S31: 0.0058 S32: 0.0026 S33: 0.0015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 179:184) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9545 -23.0245 -8.3647 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.2151 REMARK 3 T33: 0.1234 T12: 0.0047 REMARK 3 T13: -0.0357 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.1593 L22: 0.1389 REMARK 3 L33: 0.1365 L12: 0.0666 REMARK 3 L13: -0.0228 L23: 0.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: 0.0528 S13: 0.0188 REMARK 3 S21: -0.0559 S22: -0.1027 S23: 0.0384 REMARK 3 S31: -0.1100 S32: -0.0176 S33: 0.1005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 185:220) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6835 -36.8950 0.0217 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.1573 REMARK 3 T33: 0.1573 T12: -0.0030 REMARK 3 T13: -0.0225 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.0478 L22: 0.1229 REMARK 3 L33: 0.2580 L12: -0.0589 REMARK 3 L13: -0.0600 L23: 0.0439 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.1080 S13: -0.1137 REMARK 3 S21: 0.0215 S22: -0.0461 S23: 0.1247 REMARK 3 S31: 0.0348 S32: -0.1808 S33: 0.0237 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 221:227) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5928 -46.1245 14.3196 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1304 REMARK 3 T33: 0.2109 T12: -0.0192 REMARK 3 T13: 0.0495 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.0757 L22: 0.1145 REMARK 3 L33: 0.0319 L12: 0.0925 REMARK 3 L13: -0.0220 L23: -0.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.0077 S13: -0.0385 REMARK 3 S21: 0.1170 S22: -0.0037 S23: 0.0658 REMARK 3 S31: -0.0043 S32: 0.0127 S33: -0.0054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 228:264) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7821 -26.6742 5.8278 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.1416 REMARK 3 T33: 0.1538 T12: 0.0043 REMARK 3 T13: -0.0103 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.0978 L22: 0.0680 REMARK 3 L33: 0.0880 L12: 0.0219 REMARK 3 L13: -0.0877 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.0304 S13: 0.0422 REMARK 3 S21: -0.0087 S22: -0.0564 S23: 0.0334 REMARK 3 S31: -0.0120 S32: -0.1142 S33: 0.0097 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 265:274) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0731 -18.9669 14.3331 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.1071 REMARK 3 T33: 0.1282 T12: -0.0037 REMARK 3 T13: 0.0006 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.5289 L22: 0.1423 REMARK 3 L33: 0.3322 L12: 0.0489 REMARK 3 L13: 0.0171 L23: -0.1739 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.0437 S13: 0.1491 REMARK 3 S21: 0.0657 S22: -0.0267 S23: 0.0261 REMARK 3 S31: -0.0992 S32: 0.0270 S33: -0.0059 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 275:310) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3062 -19.7560 15.9264 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.1418 REMARK 3 T33: 0.1843 T12: 0.0110 REMARK 3 T13: 0.0129 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.3401 L22: 0.7465 REMARK 3 L33: 0.1784 L12: -0.1292 REMARK 3 L13: -0.0071 L23: 0.0717 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.1684 S13: 0.2088 REMARK 3 S21: 0.1193 S22: -0.0469 S23: 0.1358 REMARK 3 S31: -0.0854 S32: -0.1185 S33: 0.0246 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 311:316) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3277 -27.8602 15.0665 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.2269 REMARK 3 T33: 0.1839 T12: 0.0212 REMARK 3 T13: -0.0024 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.0785 L22: 0.0412 REMARK 3 L33: 0.0184 L12: -0.0568 REMARK 3 L13: 0.0380 L23: -0.0275 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.1334 S13: 0.0087 REMARK 3 S21: -0.0061 S22: -0.0232 S23: 0.0387 REMARK 3 S31: -0.0411 S32: -0.0229 S33: 0.0023 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : BARTELS REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49500 REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS, 1.9 M CESIUM CHLORIDE, 50% REMARK 280 DMSO, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.36667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.73333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.41667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.68333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.36667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.73333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.41667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.05000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.68333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 897 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -58.19 67.42 REMARK 500 SER A 92 -172.67 59.60 REMARK 500 SER A 107 -161.65 61.60 REMARK 500 ASN A 111 49.09 -90.64 REMARK 500 THR A 152 -98.26 -120.28 REMARK 500 ASN A 159 -140.88 53.08 REMARK 500 THR A 194 77.67 41.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(S)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY) REMARK 630 PHOSPHORYL]-N-METHYL-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 UBX A 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ PGL LNM REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UBX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 RELATED ID: 4TMN RELATED DB: PDB REMARK 900 RELATED ID: 5TMN RELATED DB: PDB REMARK 900 RELATED ID: 3T74 RELATED DB: PDB REMARK 900 RELATED ID: 3T87 RELATED DB: PDB REMARK 900 RELATED ID: 3T8C RELATED DB: PDB REMARK 900 RELATED ID: 3T8D RELATED DB: PDB REMARK 900 RELATED ID: 3T8F RELATED DB: PDB REMARK 900 RELATED ID: 3T8G RELATED DB: PDB REMARK 900 RELATED ID: 3T8H RELATED DB: PDB DBREF 3T73 A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET UBX A 401 29 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET DMS A 406 4 HET DMS A 407 4 HET DMS A 408 4 HET DMS A 409 4 HET ZN A 410 1 HET CA A 411 1 HET CA A 412 1 HET CA A 413 1 HET CA A 414 1 HETNAM UBX N-[(S)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY) HETNAM 2 UBX PHOSPHORYL]-N-METHYL-L-LEUCINAMIDE HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UBX C16 H26 N3 O5 P FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 DMS 4(C2 H6 O S) FORMUL 11 ZN ZN 2+ FORMUL 12 CA 4(CA 2+) FORMUL 16 HOH *400(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 VAL A 313 1 14 SHEET 1 A 5 ALA A 56 ASP A 57 0 SHEET 2 A 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 A 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 A 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 A 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 B 3 GLN A 31 ASP A 32 0 SHEET 2 B 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 B 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 C 5 GLN A 31 ASP A 32 0 SHEET 2 C 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 C 5 ILE A 100 TYR A 106 1 O SER A 102 N TYR A 42 SHEET 4 C 5 MET A 120 GLY A 123 1 O MET A 120 N ARG A 101 SHEET 5 C 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 D 2 GLU A 187 ILE A 188 0 SHEET 2 D 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 E 2 GLY A 248 HIS A 250 0 SHEET 2 E 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 CISPEP 1 LEU A 50 PRO A 51 0 3.79 SITE 1 AC1 17 TYR A 106 ASN A 112 ALA A 113 PHE A 114 SITE 2 AC1 17 TRP A 115 HIS A 142 GLU A 143 HIS A 146 SITE 3 AC1 17 TYR A 157 GLU A 166 ARG A 203 HIS A 231 SITE 4 AC1 17 GOL A 404 DMS A 408 ZN A 410 HOH A 703 SITE 5 AC1 17 HOH A 860 SITE 1 AC2 7 SER A 65 TYR A 66 PRO A 69 HIS A 105 SITE 2 AC2 7 ASP A 124 HOH A 520 HOH A 849 SITE 1 AC3 11 GLY A 247 GLY A 248 THR A 249 VAL A 255 SITE 2 AC3 11 GLN A 273 LEU A 275 HOH A 619 HOH A 649 SITE 3 AC3 11 HOH A 737 HOH A 738 HOH A 759 SITE 1 AC4 8 PHE A 114 TRP A 115 HIS A 146 TYR A 157 SITE 2 AC4 8 UBX A 401 HOH A 581 HOH A 596 HOH A 625 SITE 1 AC5 7 GLY A 109 TYR A 110 ASN A 111 ASN A 112 SITE 2 AC5 7 GLN A 158 HOH A 519 HOH A 803 SITE 1 AC6 5 GLY A 95 PRO A 184 TRP A 186 HOH A 633 SITE 2 AC6 5 HOH A 689 SITE 1 AC7 5 TYR A 24 SER A 25 TYR A 28 HOH A 503 SITE 2 AC7 5 HOH A 658 SITE 1 AC8 4 TYR A 110 ASN A 112 PHE A 114 UBX A 401 SITE 1 AC9 4 THR A 2 GLY A 3 GLN A 31 ASN A 33 SITE 1 BC1 4 HIS A 142 HIS A 146 GLU A 166 UBX A 401 SITE 1 BC2 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 BC2 6 GLU A 190 HOH A 850 SITE 1 BC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 BC3 6 HOH A 855 HOH A 856 SITE 1 BC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 BC4 6 HOH A 836 HOH A 852 SITE 1 BC5 6 ASP A 57 ASP A 59 GLN A 61 HOH A 851 SITE 2 BC5 6 HOH A 853 HOH A 854 CRYST1 92.700 92.700 130.100 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010787 0.006228 0.000000 0.00000 SCALE2 0.000000 0.012456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007686 0.00000