HEADER TRANSCRIPTION REGULATOR 29-JUL-11 3T75 OBSLTE 19-OCT-11 3T75 3TYR TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR VANUG, FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR VANUG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VANU; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 STRAIN: BM4518; SOURCE 5 GENE: VANU, VANUG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, OCSP, KEYWDS 3 HTH, HELIX-TURN-HELIX, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,Z.WAWRZAK,F.DEPARDIEU,P.COURVALIN, AUTHOR 2 A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID),ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS AUTHOR 4 (OCSP) REVDAT 2 19-OCT-11 3T75 1 OBSLTE REVDAT 1 24-AUG-11 3T75 0 JRNL AUTH P.J.STOGIOS,E.EVDOKIMOVA,Z.WAWRZAK,F.DEPARDIEU,P.COURVALIN, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID),ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS (OCSP) JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR VANUG, FORM I JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 17221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3744 - 3.6603 0.98 3057 181 0.1468 0.1542 REMARK 3 2 3.6603 - 2.9056 0.99 3089 166 0.1538 0.1803 REMARK 3 3 2.9056 - 2.5384 0.99 3072 171 0.1765 0.2318 REMARK 3 4 2.5384 - 2.3064 0.98 3072 156 0.1582 0.2194 REMARK 3 5 2.3064 - 2.1411 0.98 3075 149 0.1529 0.2195 REMARK 3 6 2.1411 - 2.0148 0.98 3023 158 0.1529 0.2197 REMARK 3 7 2.0148 - 1.9139 0.94 2923 161 0.1576 0.2307 REMARK 3 8 1.9139 - 1.8306 0.93 2892 154 0.1721 0.2111 REMARK 3 9 1.8306 - 1.7602 0.90 2779 157 0.2012 0.2369 REMARK 3 10 1.7602 - 1.6994 0.87 2731 135 0.2149 0.2602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 35.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92160 REMARK 3 B22 (A**2) : 3.67410 REMARK 3 B33 (A**2) : -1.75250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1312 REMARK 3 ANGLE : 0.941 1794 REMARK 3 CHIRALITY : 0.067 209 REMARK 3 PLANARITY : 0.003 228 REMARK 3 DIHEDRAL : 10.345 531 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A and resi 16:50 REMARK 3 ORIGIN FOR THE GROUP (A): 19.056 17.973 36.098 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.0463 REMARK 3 T33: 0.0829 T12: 0.0020 REMARK 3 T13: 0.0017 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.6078 L22: 0.0670 REMARK 3 L33: 0.7234 L12: 0.1371 REMARK 3 L13: -0.0121 L23: 0.0835 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0402 S13: -0.1635 REMARK 3 S21: -0.1168 S22: -0.0341 S23: -0.0367 REMARK 3 S31: 0.0759 S32: 0.0687 S33: 0.0220 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain A and resi 51:88 REMARK 3 ORIGIN FOR THE GROUP (A): 15.770 16.180 37.405 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.0741 REMARK 3 T33: 0.1233 T12: -0.0095 REMARK 3 T13: 0.0038 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4915 L22: 0.2586 REMARK 3 L33: 0.3796 L12: -0.1815 REMARK 3 L13: -0.2253 L23: 0.0954 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.0095 S13: -0.1344 REMARK 3 S21: -0.0451 S22: -0.0529 S23: -0.0844 REMARK 3 S31: 0.0210 S32: 0.0051 S33: 0.0283 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain B and resi 16:62 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7918 4.4221 32.3813 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0461 REMARK 3 T33: 0.0757 T12: -0.0006 REMARK 3 T13: 0.0175 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.3823 L22: 0.1609 REMARK 3 L33: 0.7810 L12: 0.1655 REMARK 3 L13: 0.0822 L23: -0.2718 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0080 S13: -0.1297 REMARK 3 S21: 0.0315 S22: -0.0714 S23: 0.0812 REMARK 3 S31: 0.1178 S32: -0.0479 S33: 0.0556 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain B and resi 63:88 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7626 6.4474 30.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.0309 REMARK 3 T33: 0.0722 T12: 0.0067 REMARK 3 T13: 0.0020 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.5867 L22: 0.3477 REMARK 3 L33: 0.5988 L12: 0.4505 REMARK 3 L13: 0.1634 L23: 0.0807 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.0006 S13: -0.0924 REMARK 3 S21: -0.0488 S22: -0.0286 S23: -0.0822 REMARK 3 S31: 0.0435 S32: -0.0532 S33: 0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB067121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-10; 21-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 21-ID-F; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872; 2.29 REMARK 200 MONOCHROMATOR : C(111); GRAPHITE REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; RIGAKU REMARK 200 RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33400 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: S-SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.025 M MGCL2, 0.1 M KCL, 50 MM NA REMARK 280 CACODYLATE PH 6, 15% ISOPROPANOL, 1 MM RHAMNOSE, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.12300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.51100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.12300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.51100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -235.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 63 CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 73.88 -113.42 REMARK 500 GLN A 20 26.95 -143.21 REMARK 500 GLN B 20 27.66 -140.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 282 DISTANCE = 5.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 91 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 63 O REMARK 620 2 HOH B 225 O 125.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 92 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 60 OD1 REMARK 620 2 LEU A 57 O 85.6 REMARK 620 3 HOH A 194 O 76.9 146.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 93 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD2 REMARK 620 2 HOH B 108 O 74.7 REMARK 620 3 ILE A 83 O 118.6 113.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 95 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 61 OE1 REMARK 620 2 HOH B 113 O 126.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 97 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 73 OE2 REMARK 620 2 HOH A 142 O 109.7 REMARK 620 3 HOH A 224 O 113.2 119.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 89 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 81 O REMARK 620 2 HOH B 285 O 96.1 REMARK 620 3 HOH B 167 O 108.6 119.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 91 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 60 O REMARK 620 2 HOH A 102 O 108.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 96 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 77 O REMARK 620 2 HOH A 127 O 132.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 94 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 19 O REMARK 620 2 HOH B 112 O 123.8 REMARK 620 3 THR A 66 O 122.4 113.8 REMARK 620 4 HOH A 99 O 74.1 74.6 126.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 92 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 85 O REMARK 620 2 HOH B 152 O 111.4 REMARK 620 3 HOH A 287 O 120.7 114.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 89 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 91 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 93 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 94 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 95 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 96 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 97 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 89 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 91 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 93 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 94 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 95 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 96 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 97 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 99 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T76 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR VANUG, FORM REMARK 900 II REMARK 900 RELATED ID: IDP91041 RELATED DB: TARGETDB DBREF 3T75 A 22 88 UNP Q6WRY9 Q6WRY9_ENTFA 1 67 DBREF 3T75 B 22 88 UNP Q6WRY9 Q6WRY9_ENTFA 1 67 SEQADV 3T75 MSE A 1 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLY A 2 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER A 3 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER A 4 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS A 5 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS A 6 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS A 7 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS A 8 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS A 9 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS A 10 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER A 11 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER A 12 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLY A 13 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 ARG A 14 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLU A 15 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 ASN A 16 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 LEU A 17 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 TYR A 18 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 PHE A 19 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLN A 20 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLY A 21 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 MSE B 1 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLY B 2 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER B 3 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER B 4 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS B 5 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS B 6 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS B 7 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS B 8 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS B 9 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 HIS B 10 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER B 11 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 SER B 12 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLY B 13 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 ARG B 14 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLU B 15 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 ASN B 16 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 LEU B 17 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 TYR B 18 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 PHE B 19 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLN B 20 UNP Q6WRY9 EXPRESSION TAG SEQADV 3T75 GLY B 21 UNP Q6WRY9 EXPRESSION TAG SEQRES 1 A 88 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 88 ARG GLU ASN LEU TYR PHE GLN GLY MSE ARG VAL SER TYR SEQRES 3 A 88 ASN LYS LEU TRP LYS LEU LEU ILE ASP ARG ASP MSE LYS SEQRES 4 A 88 LYS GLY GLU LEU ARG GLU ALA VAL GLY VAL SER LYS SER SEQRES 5 A 88 THR PHE ALA LYS LEU GLY LYS ASN GLU ASN VAL SER LEU SEQRES 6 A 88 THR VAL LEU LEU ALA ILE CYS GLU TYR LEU ASN CYS ASP SEQRES 7 A 88 PHE GLY ASP ILE ILE GLU ALA LEU PRO GLU SEQRES 1 B 88 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 88 ARG GLU ASN LEU TYR PHE GLN GLY MSE ARG VAL SER TYR SEQRES 3 B 88 ASN LYS LEU TRP LYS LEU LEU ILE ASP ARG ASP MSE LYS SEQRES 4 B 88 LYS GLY GLU LEU ARG GLU ALA VAL GLY VAL SER LYS SER SEQRES 5 B 88 THR PHE ALA LYS LEU GLY LYS ASN GLU ASN VAL SER LEU SEQRES 6 B 88 THR VAL LEU LEU ALA ILE CYS GLU TYR LEU ASN CYS ASP SEQRES 7 B 88 PHE GLY ASP ILE ILE GLU ALA LEU PRO GLU MODRES 3T75 MSE A 22 MET SELENOMETHIONINE MODRES 3T75 MSE A 38 MET SELENOMETHIONINE MODRES 3T75 MSE B 22 MET SELENOMETHIONINE MODRES 3T75 MSE B 38 MET SELENOMETHIONINE HET MSE A 22 13 HET MSE A 38 8 HET MSE B 22 13 HET MSE B 38 8 HET NA A 89 1 HET NA A 90 1 HET NA A 91 1 HET NA A 92 1 HET NA A 93 1 HET CL A 94 1 HET CL A 95 1 HET CL A 96 1 HET CL A 97 1 HET CL A 98 1 HET NA B 89 1 HET NA B 90 1 HET NA B 91 1 HET NA B 92 1 HET NA B 93 1 HET NA B 94 1 HET NA B 95 1 HET NA B 96 1 HET NA B 97 1 HET CA B 98 1 HET CL B 99 1 HET CL B 100 1 HET CL B 101 1 HET CL B 102 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 NA 14(NA 1+) FORMUL 8 CL 9(CL 1-) FORMUL 22 CA CA 2+ FORMUL 27 HOH *193(H2 O) HELIX 1 1 TYR A 26 ARG A 36 1 11 HELIX 2 2 LYS A 39 GLY A 48 1 10 HELIX 3 3 SER A 50 LYS A 59 1 10 HELIX 4 4 SER A 64 ASN A 76 1 13 HELIX 5 5 ASP A 78 ILE A 82 5 5 HELIX 6 6 TYR B 26 ARG B 36 1 11 HELIX 7 7 LYS B 39 GLY B 48 1 10 HELIX 8 8 SER B 50 LYS B 59 1 10 HELIX 9 9 SER B 64 ASN B 76 1 13 HELIX 10 10 ASP B 78 ILE B 82 5 5 SHEET 1 A 2 MSE A 22 SER A 25 0 SHEET 2 A 2 GLU A 84 PRO A 87 -1 O LEU A 86 N ARG A 23 SHEET 1 B 2 MSE B 22 SER B 25 0 SHEET 2 B 2 GLU B 84 PRO B 87 -1 O LEU B 86 N ARG B 23 LINK C GLY A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N ARG A 23 1555 1555 1.33 LINK C ASP A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N LYS A 39 1555 1555 1.33 LINK C GLY B 21 N MSE B 22 1555 1555 1.34 LINK C MSE B 22 N ARG B 23 1555 1555 1.33 LINK C ASP B 37 N MSE B 38 1555 1555 1.34 LINK C MSE B 38 N LYS B 39 1555 1555 1.33 LINK O VAL B 63 NA NA B 91 1555 1555 2.84 LINK OD1 ASN A 60 NA NA A 92 1555 1555 2.84 LINK OD2 ASP B 78 NA NA B 93 1555 1555 2.84 LINK O LEU A 57 NA NA A 92 1555 1555 2.86 LINK OE1 GLU B 61 NA NA B 95 1555 1555 2.86 LINK OE2 GLU B 73 NA NA B 97 1555 1555 2.88 LINK O ASP B 81 NA NA B 89 1555 1555 2.90 LINK O ASN A 60 NA NA A 91 1555 1555 2.90 LINK O CYS B 77 NA NA B 96 1555 1555 2.97 LINK O PHE B 19 NA NA B 94 1555 1555 3.02 LINK OD1 ASN B 27 CA CA B 98 1555 1555 3.08 LINK O MSE A 38 NA NA A 89 1555 1555 3.08 LINK O ALA B 85 NA NA B 92 1555 1555 3.09 LINK NA NA B 89 O HOH B 285 1555 1555 2.78 LINK NA NA A 91 O HOH A 102 1555 1555 2.84 LINK NA NA B 93 O HOH B 108 1555 1555 2.87 LINK NA NA B 95 O HOH B 113 1555 1555 2.89 LINK NA NA B 91 O HOH B 225 1555 1555 2.94 LINK NA NA B 94 O HOH B 112 1555 1555 2.96 LINK NA NA B 89 O HOH B 167 1555 1555 2.99 LINK NA NA A 93 O HOH A 100 1555 1555 3.08 LINK NA NA B 92 O HOH B 152 1555 1555 3.10 LINK NA NA A 92 O HOH A 194 1555 1555 3.19 LINK O ILE A 83 NA NA B 93 1555 1555 2.76 LINK O THR A 66 NA NA B 94 1555 1555 2.84 LINK NA NA B 97 O HOH A 142 1555 1555 2.95 LINK NA NA B 92 O HOH A 287 1555 1555 3.02 LINK NA NA B 94 O HOH A 99 1555 1555 3.02 LINK NA NA B 96 O HOH A 127 1555 1555 3.08 LINK NA NA B 97 O HOH A 224 1555 1555 3.12 SITE 1 AC1 3 ASP A 37 MSE A 38 HOH B 234 SITE 1 AC2 2 ASN A 60 HOH A 102 SITE 1 AC3 6 ASN A 27 TRP A 30 LEU A 57 GLY A 58 SITE 2 AC3 6 ASN A 60 LYS B 31 SITE 1 AC4 6 SER A 25 ASN A 27 LEU A 86 CL A 96 SITE 2 AC4 6 HOH A 100 CL B 102 SITE 1 AC5 3 LYS A 59 GLU A 61 HOH A 166 SITE 1 AC6 3 ASN A 27 HOH A 194 HOH B 163 SITE 1 AC7 5 ARG A 23 LEU A 86 NA A 93 HOH A 118 SITE 2 AC7 5 GLU B 84 SITE 1 AC8 4 SER A 64 THR A 66 GLU B 15 HOH B 261 SITE 1 AC9 4 VAL A 63 SER A 64 HOH A 104 HOH B 261 SITE 1 BC1 3 ASP B 81 HOH B 167 HOH B 285 SITE 1 BC2 3 LEU A 65 VAL B 63 HOH B 225 SITE 1 BC3 5 PRO A 87 HOH A 287 ALA B 85 PRO B 87 SITE 2 BC3 5 HOH B 152 SITE 1 BC4 5 LYS A 28 GLY A 80 ILE A 83 ASP B 78 SITE 2 BC4 5 HOH B 108 SITE 1 BC5 5 THR A 66 ALA A 70 HOH A 99 PHE B 19 SITE 2 BC5 5 HOH B 112 SITE 1 BC6 3 LYS B 59 GLU B 61 HOH B 113 SITE 1 BC7 7 ARG A 14 MSE A 22 HOH A 127 CYS B 72 SITE 2 BC7 7 ASN B 76 CYS B 77 CL B 100 SITE 1 BC8 5 PHE A 19 GLN A 20 GLY A 21 HOH A 142 SITE 2 BC8 5 GLU B 73 SITE 1 BC9 2 ASN B 27 ASN B 60 SITE 1 CC1 2 ARG B 44 HOH B 118 SITE 1 CC2 3 GLU B 73 ASN B 76 NA B 96 SITE 1 CC3 4 TYR B 74 HOH B 140 HOH B 166 HOH B 241 SITE 1 CC4 4 NA A 93 SER B 25 GLU B 84 HOH B 111 CRYST1 52.246 53.022 55.580 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017992 0.00000