HEADER LIGASE 30-JUL-11 3T7H TITLE ATG8 TRANSFER FROM ATG7 TO ATG3: A DISTINCTIVE E1-E2 ARCHITECTURE AND TITLE 2 MECHANISM IN THE AUTOPHAGY PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME ATG7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NTD, UNP RESIDUES 1-289; COMPND 5 SYNONYM: ATG12-ACTIVATING ENZYME E1 ATG7, AUTOPHAGY-RELATED PROTEIN COMPND 6 7, CYTOPLASM TO VACUOLE TARGETING PROTEIN 2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ATG7, APG7, CVT2, YHR171W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATG7, AUTOPHAGY, E1, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.TAHERBHOY,S.W.TAIT,S.E.KAISER,A.H.WILLIAMS,A.DENG,A.NOURSE, AUTHOR 2 M.HAMMEL,I.KURINOV,C.O.ROCK,D.R.GREEN,B.A.SCHULMAN REVDAT 2 13-SEP-23 3T7H 1 SEQADV REVDAT 1 23-NOV-11 3T7H 0 JRNL AUTH A.M.TAHERBHOY,S.W.TAIT,S.E.KAISER,A.H.WILLIAMS,A.DENG, JRNL AUTH 2 A.NOURSE,M.HAMMEL,I.KURINOV,C.O.ROCK,D.R.GREEN,B.A.SCHULMAN JRNL TITL ATG8 TRANSFER FROM ATG7 TO ATG3: A DISTINCTIVE E1-E2 JRNL TITL 2 ARCHITECTURE AND MECHANISM IN THE AUTOPHAGY PATHWAY. JRNL REF MOL.CELL V. 44 451 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 22055190 JRNL DOI 10.1016/J.MOLCEL.2011.08.034 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 81152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3401 - 3.4456 0.99 8464 451 0.1857 0.1783 REMARK 3 2 3.4456 - 2.7350 0.99 8188 418 0.1809 0.2105 REMARK 3 3 2.7350 - 2.3893 0.99 8035 424 0.1866 0.2102 REMARK 3 4 2.3893 - 2.1708 0.98 7934 427 0.1766 0.2114 REMARK 3 5 2.1708 - 2.0152 0.98 7901 414 0.1751 0.2259 REMARK 3 6 2.0152 - 1.8964 0.96 7807 407 0.1730 0.1949 REMARK 3 7 1.8964 - 1.8014 0.94 7554 389 0.1806 0.2091 REMARK 3 8 1.8014 - 1.7230 0.92 7414 373 0.1898 0.2299 REMARK 3 9 1.7230 - 1.6567 0.89 7131 376 0.1976 0.2194 REMARK 3 10 1.6567 - 1.6000 0.83 6676 369 0.2169 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 51.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.41310 REMARK 3 B22 (A**2) : 2.58310 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4751 REMARK 3 ANGLE : 1.036 6458 REMARK 3 CHIRALITY : 0.070 724 REMARK 3 PLANARITY : 0.004 831 REMARK 3 DIHEDRAL : 11.925 1731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 1.7338 -23.9112 -22.3504 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.0210 REMARK 3 T33: 0.0120 T12: 0.0047 REMARK 3 T13: -0.0097 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6615 L22: 0.5295 REMARK 3 L33: 0.4342 L12: -0.4465 REMARK 3 L13: 0.4325 L23: -0.3321 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -0.0367 S13: 0.0413 REMARK 3 S21: 0.1267 S22: 0.0388 S23: -0.0220 REMARK 3 S31: -0.0728 S32: 0.0009 S33: 0.0426 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 26.0867 -53.0851 -22.0503 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.0092 REMARK 3 T33: 0.0051 T12: 0.0038 REMARK 3 T13: 0.0027 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.9299 L22: 0.4391 REMARK 3 L33: 0.3485 L12: -0.3999 REMARK 3 L13: -0.4468 L23: 0.1855 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.0328 S13: -0.0620 REMARK 3 S21: 0.0803 S22: 0.0354 S23: -0.0031 REMARK 3 S31: 0.0298 S32: 0.0025 S33: 0.0387 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85691 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3T7F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% ISOPROPANOL, 0.1M POTASSIUM REMARK 280 THIOCYANATE, 0.05M CITRATE BUFFER PH 4.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.09200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.68650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.21950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.68650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.09200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.21950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 69 REMARK 465 HIS A 70 REMARK 465 ASN A 71 REMARK 465 ASN A 72 REMARK 465 LYS A 73 REMARK 465 PRO A 259 REMARK 465 GLN A 260 REMARK 465 SER A 261 REMARK 465 SER A 262 REMARK 465 SER A 263 REMARK 465 SER A 289 REMARK 465 PRO B 259 REMARK 465 GLN B 260 REMARK 465 SER B 261 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 THR A 75 CB OG1 CG2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 TYR A 134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ASN A 265 CG OD1 ND2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 167 CD CE NZ REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 SER B 262 CB OG REMARK 470 SER B 263 CB OG REMARK 470 SER B 264 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 634 O HOH A 671 1.86 REMARK 500 O HOH A 512 O HOH A 554 1.86 REMARK 500 O HOH A 340 O HOH A 479 1.88 REMARK 500 O HOH B 624 O HOH B 676 1.90 REMARK 500 O HOH A 482 O HOH A 504 1.92 REMARK 500 O HOH B 539 O HOH B 638 1.95 REMARK 500 O HOH B 316 O HOH B 404 1.98 REMARK 500 O HOH B 315 O HOH B 486 1.98 REMARK 500 NE2 GLN A 104 O HOH A 303 1.99 REMARK 500 OH TYR A 228 O HOH A 540 2.02 REMARK 500 O HOH B 547 O HOH B 593 2.02 REMARK 500 O HOH B 627 O HOH B 666 2.03 REMARK 500 O HOH A 636 O HOH B 603 2.03 REMARK 500 O HOH A 374 O HOH A 383 2.03 REMARK 500 O HOH B 323 O HOH B 373 2.04 REMARK 500 O HOH B 351 O HOH B 375 2.08 REMARK 500 O HOH B 513 O HOH B 515 2.10 REMARK 500 O HOH A 629 O HOH A 631 2.11 REMARK 500 O HOH B 382 O HOH B 606 2.12 REMARK 500 O HOH A 527 O HOH A 554 2.12 REMARK 500 O HOH A 588 O HOH A 616 2.13 REMARK 500 O HOH B 539 O HOH B 576 2.15 REMARK 500 O HOH B 300 O HOH B 490 2.15 REMARK 500 O HOH A 449 O HOH A 587 2.15 REMARK 500 O HOH B 322 O HOH B 573 2.15 REMARK 500 O HOH B 477 O HOH B 499 2.15 REMARK 500 O HOH A 366 O HOH A 494 2.17 REMARK 500 O HOH A 490 O HOH A 491 2.18 REMARK 500 O HOH A 593 O HOH A 596 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 332 O HOH B 297 3554 2.10 REMARK 500 O HOH A 384 O HOH B 351 3554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 0 15.61 -140.33 REMARK 500 ASN A 76 -9.61 69.18 REMARK 500 ASN A 244 -159.32 -98.02 REMARK 500 SER B 0 13.78 -141.13 REMARK 500 ASN B 50 52.85 -113.90 REMARK 500 ASN B 244 -155.89 -99.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T7E RELATED DB: PDB REMARK 900 RELATED ID: 3T7F RELATED DB: PDB REMARK 900 RELATED ID: 3T7G RELATED DB: PDB DBREF 3T7H A 1 289 UNP P38862 ATG7_YEAST 1 289 DBREF 3T7H B 1 289 UNP P38862 ATG7_YEAST 1 289 SEQADV 3T7H GLY A -1 UNP P38862 EXPRESSION TAG SEQADV 3T7H SER A 0 UNP P38862 EXPRESSION TAG SEQADV 3T7H ASP A 283 UNP P38862 PRO 283 ENGINEERED MUTATION SEQADV 3T7H GLY B -1 UNP P38862 EXPRESSION TAG SEQADV 3T7H SER B 0 UNP P38862 EXPRESSION TAG SEQADV 3T7H ASP B 283 UNP P38862 PRO 283 ENGINEERED MUTATION SEQRES 1 A 291 GLY SER MET SER SER GLU ARG VAL LEU SER TYR ALA PRO SEQRES 2 A 291 ALA PHE LYS SER PHE LEU ASP THR SER PHE PHE GLN GLU SEQRES 3 A 291 LEU SER ARG LEU LYS LEU ASP VAL LEU LYS LEU ASP SER SEQRES 4 A 291 THR CYS GLN PRO LEU THR VAL ASN LEU ASP LEU HIS ASN SEQRES 5 A 291 ILE PRO LYS SER ALA ASP GLN VAL PRO LEU PHE LEU THR SEQRES 6 A 291 ASN ARG SER PHE GLU LYS HIS ASN ASN LYS ARG THR ASN SEQRES 7 A 291 GLU VAL PRO LEU GLN GLY SER ILE PHE ASN PHE ASN VAL SEQRES 8 A 291 LEU ASP GLU PHE LYS ASN LEU ASP LYS GLN LEU PHE LEU SEQRES 9 A 291 HIS GLN ARG ALA LEU GLU CYS TRP GLU ASP GLY ILE LYS SEQRES 10 A 291 ASP ILE ASN LYS CYS VAL SER PHE VAL ILE ILE SER PHE SEQRES 11 A 291 ALA ASP LEU LYS LYS TYR ARG PHE TYR TYR TRP LEU GLY SEQRES 12 A 291 VAL PRO CYS PHE GLN ARG PRO SER SER THR VAL LEU HIS SEQRES 13 A 291 VAL ARG PRO GLU PRO SER LEU LYS GLY LEU PHE SER LYS SEQRES 14 A 291 CYS GLN LYS TRP PHE ASP VAL ASN TYR SER LYS TRP VAL SEQRES 15 A 291 CYS ILE LEU ASP ALA ASP ASP GLU ILE VAL ASN TYR ASP SEQRES 16 A 291 LYS CYS ILE ILE ARG LYS THR LYS VAL LEU ALA ILE ARG SEQRES 17 A 291 ASP THR SER THR MET GLU ASN VAL PRO SER ALA LEU THR SEQRES 18 A 291 LYS ASN PHE LEU SER VAL LEU GLN TYR ASP VAL PRO ASP SEQRES 19 A 291 LEU ILE ASP PHE LYS LEU LEU ILE ILE ARG GLN ASN GLU SEQRES 20 A 291 GLY SER PHE ALA LEU ASN ALA THR PHE ALA SER ILE ASP SEQRES 21 A 291 PRO GLN SER SER SER SER ASN PRO ASP MET LYS VAL SER SEQRES 22 A 291 GLY TRP GLU ARG ASN VAL GLN GLY LYS LEU ALA ASP ARG SEQRES 23 A 291 VAL VAL ASP LEU SER SEQRES 1 B 291 GLY SER MET SER SER GLU ARG VAL LEU SER TYR ALA PRO SEQRES 2 B 291 ALA PHE LYS SER PHE LEU ASP THR SER PHE PHE GLN GLU SEQRES 3 B 291 LEU SER ARG LEU LYS LEU ASP VAL LEU LYS LEU ASP SER SEQRES 4 B 291 THR CYS GLN PRO LEU THR VAL ASN LEU ASP LEU HIS ASN SEQRES 5 B 291 ILE PRO LYS SER ALA ASP GLN VAL PRO LEU PHE LEU THR SEQRES 6 B 291 ASN ARG SER PHE GLU LYS HIS ASN ASN LYS ARG THR ASN SEQRES 7 B 291 GLU VAL PRO LEU GLN GLY SER ILE PHE ASN PHE ASN VAL SEQRES 8 B 291 LEU ASP GLU PHE LYS ASN LEU ASP LYS GLN LEU PHE LEU SEQRES 9 B 291 HIS GLN ARG ALA LEU GLU CYS TRP GLU ASP GLY ILE LYS SEQRES 10 B 291 ASP ILE ASN LYS CYS VAL SER PHE VAL ILE ILE SER PHE SEQRES 11 B 291 ALA ASP LEU LYS LYS TYR ARG PHE TYR TYR TRP LEU GLY SEQRES 12 B 291 VAL PRO CYS PHE GLN ARG PRO SER SER THR VAL LEU HIS SEQRES 13 B 291 VAL ARG PRO GLU PRO SER LEU LYS GLY LEU PHE SER LYS SEQRES 14 B 291 CYS GLN LYS TRP PHE ASP VAL ASN TYR SER LYS TRP VAL SEQRES 15 B 291 CYS ILE LEU ASP ALA ASP ASP GLU ILE VAL ASN TYR ASP SEQRES 16 B 291 LYS CYS ILE ILE ARG LYS THR LYS VAL LEU ALA ILE ARG SEQRES 17 B 291 ASP THR SER THR MET GLU ASN VAL PRO SER ALA LEU THR SEQRES 18 B 291 LYS ASN PHE LEU SER VAL LEU GLN TYR ASP VAL PRO ASP SEQRES 19 B 291 LEU ILE ASP PHE LYS LEU LEU ILE ILE ARG GLN ASN GLU SEQRES 20 B 291 GLY SER PHE ALA LEU ASN ALA THR PHE ALA SER ILE ASP SEQRES 21 B 291 PRO GLN SER SER SER SER ASN PRO ASP MET LYS VAL SER SEQRES 22 B 291 GLY TRP GLU ARG ASN VAL GLN GLY LYS LEU ALA ASP ARG SEQRES 23 B 291 VAL VAL ASP LEU SER FORMUL 3 HOH *689(H2 O) HELIX 1 1 ASP A 18 LEU A 30 1 13 HELIX 2 2 THR A 63 GLU A 68 5 6 HELIX 3 3 VAL A 89 LEU A 96 1 8 HELIX 4 4 ASP A 97 ILE A 114 1 18 HELIX 5 5 ASP A 116 CYS A 120 5 5 HELIX 6 6 PRO A 159 GLY A 163 5 5 HELIX 7 7 LEU A 164 ASN A 175 1 12 HELIX 8 8 ASP A 193 LYS A 201 1 9 HELIX 9 9 LEU A 218 VAL A 230 1 13 HELIX 10 10 ASP B 18 LEU B 30 1 13 HELIX 11 11 THR B 63 GLU B 68 5 6 HELIX 12 12 VAL B 89 LEU B 96 1 8 HELIX 13 13 ASP B 97 ILE B 114 1 18 HELIX 14 14 ASP B 116 CYS B 120 5 5 HELIX 15 15 PRO B 159 GLY B 163 5 5 HELIX 16 16 LEU B 164 ASN B 175 1 12 HELIX 17 17 ASP B 193 LYS B 201 1 9 HELIX 18 18 LEU B 218 VAL B 230 1 13 SHEET 1 A 7 ARG A 5 VAL A 6 0 SHEET 2 A 7 THR A 151 PRO A 157 -1 O VAL A 155 N ARG A 5 SHEET 3 A 7 PHE A 248 SER A 256 -1 O ASN A 251 N ARG A 156 SHEET 4 A 7 ASP A 235 ILE A 241 -1 N ILE A 240 O PHE A 248 SHEET 5 A 7 VAL A 202 ARG A 206 1 N LEU A 203 O LEU A 239 SHEET 6 A 7 VAL A 180 LEU A 183 -1 N CYS A 181 O ALA A 204 SHEET 7 A 7 ILE A 189 ASN A 191 -1 O VAL A 190 N ILE A 182 SHEET 1 B 2 PHE A 13 LEU A 17 0 SHEET 2 B 2 VAL A 58 LEU A 62 1 O LEU A 60 N LYS A 14 SHEET 1 C10 LYS A 269 TRP A 273 0 SHEET 2 C10 ARG A 135 GLN A 146 -1 N GLN A 146 O LYS A 269 SHEET 3 C10 PHE A 123 ASP A 130 -1 N VAL A 124 O GLY A 141 SHEET 4 C10 VAL A 78 PHE A 87 1 N PHE A 85 O ILE A 125 SHEET 5 C10 SER A 37 LEU A 46 -1 N VAL A 44 O LEU A 80 SHEET 6 C10 SER B 37 LEU B 46 -1 O CYS B 39 N SER A 37 SHEET 7 C10 VAL B 78 PHE B 87 -1 O LEU B 80 N VAL B 44 SHEET 8 C10 PHE B 123 ASP B 130 1 O ILE B 125 N PHE B 85 SHEET 9 C10 ARG B 135 GLN B 146 -1 O GLY B 141 N VAL B 124 SHEET 10 C10 LYS B 269 TRP B 273 -1 O SER B 271 N CYS B 144 SHEET 1 D10 ARG A 284 ASP A 287 0 SHEET 2 D10 ARG A 135 GLN A 146 -1 N PHE A 136 O VAL A 286 SHEET 3 D10 PHE A 123 ASP A 130 -1 N VAL A 124 O GLY A 141 SHEET 4 D10 VAL A 78 PHE A 87 1 N PHE A 85 O ILE A 125 SHEET 5 D10 SER A 37 LEU A 46 -1 N VAL A 44 O LEU A 80 SHEET 6 D10 SER B 37 LEU B 46 -1 O CYS B 39 N SER A 37 SHEET 7 D10 VAL B 78 PHE B 87 -1 O LEU B 80 N VAL B 44 SHEET 8 D10 PHE B 123 ASP B 130 1 O ILE B 125 N PHE B 85 SHEET 9 D10 ARG B 135 GLN B 146 -1 O GLY B 141 N VAL B 124 SHEET 10 D10 ARG B 284 ASP B 287 -1 O VAL B 286 N PHE B 136 SHEET 1 E 7 ARG B 5 VAL B 6 0 SHEET 2 E 7 THR B 151 PRO B 157 -1 O VAL B 155 N ARG B 5 SHEET 3 E 7 PHE B 248 SER B 256 -1 O ASN B 251 N ARG B 156 SHEET 4 E 7 ASP B 235 ILE B 241 -1 N ILE B 240 O PHE B 248 SHEET 5 E 7 VAL B 202 ARG B 206 1 N LEU B 203 O LEU B 239 SHEET 6 E 7 VAL B 180 LEU B 183 -1 N CYS B 181 O ALA B 204 SHEET 7 E 7 ILE B 189 ASN B 191 -1 O VAL B 190 N ILE B 182 SHEET 1 F 2 PHE B 13 LEU B 17 0 SHEET 2 F 2 VAL B 58 LEU B 62 1 O LEU B 60 N LYS B 14 CISPEP 1 ARG A 147 PRO A 148 0 -4.26 CISPEP 2 ARG B 147 PRO B 148 0 -4.99 CRYST1 56.184 74.439 153.373 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006520 0.00000