HEADER TRANSFERASE 30-JUL-11 3T7O TITLE CRYSTAL STRUCTURE OF HUMAN GLYCOGENIN-1 (GYG1) COMPLEXED WITH TITLE 2 MANGANESE, UDP-GLUCOSE AND GLUCOSE CAVEAT 3T7O GLC A 263 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGENIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLYCOGENIN (UNP RESIDUES 1-262); COMPND 5 SYNONYM: GN-1, GN1; COMPND 6 EC: 2.4.1.186; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GYG, GYG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 TRANSFERASE, GLYCOSYLTRANSFERASE, GLYCOGEN BIOSYNTHESIS, KEYWDS 3 GLYCOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,D.S.FROESE,E.KRYSZTOFINSKA,F.VON DELFT,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,U.OPPERMANN,W.W.YUE,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 6 13-SEP-23 3T7O 1 HETSYN REVDAT 5 29-JUL-20 3T7O 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE REVDAT 4 11-JAN-12 3T7O 1 JRNL REVDAT 3 28-DEC-11 3T7O 1 JRNL REVDAT 2 14-DEC-11 3T7O 1 REVDAT 1 31-AUG-11 3T7O 0 JRNL AUTH A.CHAIKUAD,D.S.FROESE,G.BERRIDGE,F.VON DELFT,U.OPPERMANN, JRNL AUTH 2 W.W.YUE JRNL TITL CONFORMATIONAL PLASTICITY OF GLYCOGENIN AND ITS JRNL TITL 2 MALTOSACCHARIDE SUBSTRATE DURING GLYCOGEN BIOGENESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 21028 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22160680 JRNL DOI 10.1073/PNAS.1113921108 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 42005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2895 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : -1.66000 REMARK 3 B13 (A**2) : 0.83000 REMARK 3 B23 (A**2) : 0.99000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4472 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2968 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6067 ; 1.620 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7243 ; 1.074 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 6.257 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;35.435 ;24.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;12.924 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.500 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4791 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 897 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2647 ; 0.641 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1053 ; 0.186 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4315 ; 1.090 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1825 ; 1.916 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1747 ; 2.746 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9923 25.3182 21.1028 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0081 REMARK 3 T33: 0.0466 T12: 0.0034 REMARK 3 T13: 0.0000 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.3313 L22: 1.5211 REMARK 3 L33: 2.9165 L12: 0.4499 REMARK 3 L13: -0.4253 L23: 0.3135 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0590 S13: -0.0346 REMARK 3 S21: -0.0395 S22: -0.0028 S23: 0.0183 REMARK 3 S31: -0.1469 S32: 0.0909 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 33.4364 5.6363 16.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.0150 REMARK 3 T33: 0.1507 T12: 0.0266 REMARK 3 T13: 0.0161 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.0743 L22: 6.0706 REMARK 3 L33: 6.3325 L12: 0.6994 REMARK 3 L13: 0.4078 L23: 1.5563 REMARK 3 S TENSOR REMARK 3 S11: -0.1201 S12: -0.1390 S13: -0.1900 REMARK 3 S21: 0.2889 S22: -0.0316 S23: -0.1472 REMARK 3 S31: 0.4097 S32: 0.1707 S33: 0.1516 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 236 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8330 15.5325 52.6499 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0291 REMARK 3 T33: 0.0338 T12: 0.0051 REMARK 3 T13: 0.0208 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.6032 L22: 0.8454 REMARK 3 L33: 2.3925 L12: 0.3044 REMARK 3 L13: 0.4174 L23: -0.5093 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0292 S13: -0.0299 REMARK 3 S21: -0.0252 S22: 0.0001 S23: -0.0428 REMARK 3 S31: 0.0806 S32: -0.0604 S33: 0.0142 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 237 B 262 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5627 12.8251 59.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0835 REMARK 3 T33: 0.1083 T12: 0.0216 REMARK 3 T13: -0.0268 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.6196 L22: 4.4664 REMARK 3 L33: 11.6697 L12: 0.0684 REMARK 3 L13: -2.4812 L23: -1.6091 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: 0.0297 S13: 0.1354 REMARK 3 S21: -0.1182 S22: -0.0445 S23: 0.0620 REMARK 3 S31: 0.3186 S32: 0.3902 S33: 0.0943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : FLAT GRAPHITE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3Q4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULPHATE, 0.1M BIS-TRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 SER B 0 OG REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 470 O HOH B 471 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 178 98.03 68.15 REMARK 500 ASN A 188 64.71 -158.57 REMARK 500 HIS A 236 46.58 70.01 REMARK 500 ASP B 178 95.85 60.58 REMARK 500 ASN B 188 67.09 -160.23 REMARK 500 ALA B 235 153.27 -48.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 264 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD2 REMARK 620 2 ASP A 104 OD1 95.3 REMARK 620 3 ASP A 104 OD2 157.6 62.3 REMARK 620 4 HIS A 212 NE2 92.9 91.4 89.9 REMARK 620 5 UPG A 265 O1A 96.2 88.8 82.0 170.8 REMARK 620 6 UPG A 265 O1B 100.1 164.3 102.1 90.7 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 263 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 102 OD2 REMARK 620 2 ASP B 104 OD1 97.4 REMARK 620 3 ASP B 104 OD2 153.4 56.2 REMARK 620 4 HIS B 212 NE2 96.2 93.8 89.2 REMARK 620 5 UPG B 264 O1B 104.0 157.7 102.0 90.2 REMARK 620 6 UPG B 264 O1A 94.7 82.1 79.8 168.8 89.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QVB RELATED DB: PDB REMARK 900 HGYG1 (Y195F) WITH UDP,MN IN OPEN FORM REMARK 900 RELATED ID: 3Q4S RELATED DB: PDB REMARK 900 HGYG1 (Y195F) APO FORM REMARK 900 RELATED ID: 3RMW RELATED DB: PDB REMARK 900 HGYG1 (T83M) WITH UDPG, MN REMARK 900 RELATED ID: 3RMV RELATED DB: PDB REMARK 900 HGYG1 (T83M) WITH UDP, MN REMARK 900 RELATED ID: 3T7M RELATED DB: PDB REMARK 900 RELATED ID: 3T7N RELATED DB: PDB DBREF 3T7O A 1 262 UNP P46976 GLYG_HUMAN 1 262 DBREF 3T7O B 1 262 UNP P46976 GLYG_HUMAN 1 262 SEQADV 3T7O SER A 0 UNP P46976 EXPRESSION TAG SEQADV 3T7O SER B 0 UNP P46976 EXPRESSION TAG SEQRES 1 A 263 SER MET THR ASP GLN ALA PHE VAL THR LEU THR THR ASN SEQRES 2 A 263 ASP ALA TYR ALA LYS GLY ALA LEU VAL LEU GLY SER SER SEQRES 3 A 263 LEU LYS GLN HIS ARG THR THR ARG ARG LEU VAL VAL LEU SEQRES 4 A 263 ALA THR PRO GLN VAL SER ASP SER MET ARG LYS VAL LEU SEQRES 5 A 263 GLU THR VAL PHE ASP GLU VAL ILE MET VAL ASP VAL LEU SEQRES 6 A 263 ASP SER GLY ASP SER ALA HIS LEU THR LEU MET LYS ARG SEQRES 7 A 263 PRO GLU LEU GLY VAL THR LEU THR LYS LEU HIS CYS TRP SEQRES 8 A 263 SER LEU THR GLN TYR SER LYS CYS VAL PHE MET ASP ALA SEQRES 9 A 263 ASP THR LEU VAL LEU ALA ASN ILE ASP ASP LEU PHE ASP SEQRES 10 A 263 ARG GLU GLU LEU SER ALA ALA PRO ASP PRO GLY TRP PRO SEQRES 11 A 263 ASP CYS PHE ASN SER GLY VAL PHE VAL TYR GLN PRO SER SEQRES 12 A 263 VAL GLU THR TYR ASN GLN LEU LEU HIS LEU ALA SER GLU SEQRES 13 A 263 GLN GLY SER PHE ASP GLY GLY ASP GLN GLY ILE LEU ASN SEQRES 14 A 263 THR PHE PHE SER SER TRP ALA THR THR ASP ILE ARG LYS SEQRES 15 A 263 HIS LEU PRO PHE ILE TYR ASN LEU SER SER ILE SER ILE SEQRES 16 A 263 TYR SER TYR LEU PRO ALA PHE LYS VAL PHE GLY ALA SER SEQRES 17 A 263 ALA LYS VAL VAL HIS PHE LEU GLY ARG VAL LYS PRO TRP SEQRES 18 A 263 ASN TYR THR TYR ASP PRO LYS THR LYS SER VAL LYS SER SEQRES 19 A 263 GLU ALA HIS ASP PRO ASN MET THR HIS PRO GLU PHE LEU SEQRES 20 A 263 ILE LEU TRP TRP ASN ILE PHE THR THR ASN VAL LEU PRO SEQRES 21 A 263 LEU LEU GLN SEQRES 1 B 263 SER MET THR ASP GLN ALA PHE VAL THR LEU THR THR ASN SEQRES 2 B 263 ASP ALA TYR ALA LYS GLY ALA LEU VAL LEU GLY SER SER SEQRES 3 B 263 LEU LYS GLN HIS ARG THR THR ARG ARG LEU VAL VAL LEU SEQRES 4 B 263 ALA THR PRO GLN VAL SER ASP SER MET ARG LYS VAL LEU SEQRES 5 B 263 GLU THR VAL PHE ASP GLU VAL ILE MET VAL ASP VAL LEU SEQRES 6 B 263 ASP SER GLY ASP SER ALA HIS LEU THR LEU MET LYS ARG SEQRES 7 B 263 PRO GLU LEU GLY VAL THR LEU THR LYS LEU HIS CYS TRP SEQRES 8 B 263 SER LEU THR GLN TYR SER LYS CYS VAL PHE MET ASP ALA SEQRES 9 B 263 ASP THR LEU VAL LEU ALA ASN ILE ASP ASP LEU PHE ASP SEQRES 10 B 263 ARG GLU GLU LEU SER ALA ALA PRO ASP PRO GLY TRP PRO SEQRES 11 B 263 ASP CYS PHE ASN SER GLY VAL PHE VAL TYR GLN PRO SER SEQRES 12 B 263 VAL GLU THR TYR ASN GLN LEU LEU HIS LEU ALA SER GLU SEQRES 13 B 263 GLN GLY SER PHE ASP GLY GLY ASP GLN GLY ILE LEU ASN SEQRES 14 B 263 THR PHE PHE SER SER TRP ALA THR THR ASP ILE ARG LYS SEQRES 15 B 263 HIS LEU PRO PHE ILE TYR ASN LEU SER SER ILE SER ILE SEQRES 16 B 263 TYR SER TYR LEU PRO ALA PHE LYS VAL PHE GLY ALA SER SEQRES 17 B 263 ALA LYS VAL VAL HIS PHE LEU GLY ARG VAL LYS PRO TRP SEQRES 18 B 263 ASN TYR THR TYR ASP PRO LYS THR LYS SER VAL LYS SER SEQRES 19 B 263 GLU ALA HIS ASP PRO ASN MET THR HIS PRO GLU PHE LEU SEQRES 20 B 263 ILE LEU TRP TRP ASN ILE PHE THR THR ASN VAL LEU PRO SEQRES 21 B 263 LEU LEU GLN HET GLC A 263 12 HET MN A 264 1 HET UPG A 265 36 HET EDO A 266 4 HET EDO A 267 4 HET EDO A 268 4 HET EDO A 269 4 HET EDO A 270 4 HET EDO A 271 4 HET EDO A 272 4 HET EDO A 273 4 HET EDO A 274 4 HET EDO A 275 4 HET MN B 263 1 HET UPG B 264 36 HET EDO B 265 4 HET EDO B 266 4 HET EDO B 267 4 HET EDO B 268 4 HET EDO B 269 4 HET EDO B 270 4 HET EDO B 271 4 HET EDO B 272 4 HET EDO B 273 8 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GLC C6 H12 O6 FORMUL 4 MN 2(MN 2+) FORMUL 5 UPG 2(C15 H24 N2 O17 P2) FORMUL 6 EDO 19(C2 H6 O2) FORMUL 27 HOH *522(H2 O) HELIX 1 1 ASN A 12 HIS A 29 1 18 HELIX 2 2 SER A 44 PHE A 55 1 12 HELIX 3 3 ASP A 68 MET A 75 1 8 HELIX 4 4 LEU A 80 LEU A 92 5 13 HELIX 5 5 ILE A 111 ARG A 117 5 7 HELIX 6 6 SER A 142 GLN A 156 1 15 HELIX 7 7 GLY A 162 PHE A 171 1 10 HELIX 8 8 ASP A 178 HIS A 182 5 5 HELIX 9 9 PRO A 184 ASN A 188 5 5 HELIX 10 10 SER A 191 TYR A 197 1 7 HELIX 11 11 TYR A 197 GLY A 205 1 9 HELIX 12 12 ALA A 206 ALA A 208 5 3 HELIX 13 13 LYS A 218 TYR A 222 5 5 HELIX 14 14 ASP A 237 THR A 241 5 5 HELIX 15 15 PRO A 243 VAL A 257 1 15 HELIX 16 16 LEU A 258 GLN A 262 5 5 HELIX 17 17 ASN B 12 HIS B 29 1 18 HELIX 18 18 SER B 44 PHE B 55 1 12 HELIX 19 19 ASP B 68 MET B 75 1 8 HELIX 20 20 ARG B 77 LEU B 92 5 16 HELIX 21 21 ILE B 111 ARG B 117 5 7 HELIX 22 22 SER B 142 GLN B 156 1 15 HELIX 23 23 GLY B 162 PHE B 171 1 10 HELIX 24 24 SER B 173 THR B 177 5 5 HELIX 25 25 ASP B 178 HIS B 182 5 5 HELIX 26 26 PRO B 184 ASN B 188 5 5 HELIX 27 27 SER B 191 TYR B 197 1 7 HELIX 28 28 TYR B 197 GLY B 205 1 9 HELIX 29 29 ALA B 206 ALA B 208 5 3 HELIX 30 30 LYS B 218 TYR B 222 5 5 HELIX 31 31 ASP B 237 THR B 241 5 5 HELIX 32 32 PRO B 243 VAL B 257 1 15 HELIX 33 33 LEU B 258 LEU B 261 5 4 SHEET 1 A 6 GLU A 57 MET A 60 0 SHEET 2 A 6 ARG A 34 ALA A 39 1 N VAL A 37 O ILE A 59 SHEET 3 A 6 GLN A 4 THR A 10 1 N THR A 10 O LEU A 38 SHEET 4 A 6 LYS A 97 MET A 101 1 O VAL A 99 N VAL A 7 SHEET 5 A 6 PHE A 132 TYR A 139 -1 O PHE A 137 N PHE A 100 SHEET 6 A 6 SER A 121 PRO A 124 -1 N ALA A 123 O ASN A 133 SHEET 1 B 3 THR A 105 VAL A 107 0 SHEET 2 B 3 VAL A 210 HIS A 212 -1 O VAL A 211 N LEU A 106 SHEET 3 B 3 LEU A 189 SER A 190 1 N LEU A 189 O VAL A 210 SHEET 1 C 2 TYR A 224 ASP A 225 0 SHEET 2 C 2 SER A 230 VAL A 231 -1 O SER A 230 N ASP A 225 SHEET 1 D 6 GLU B 57 MET B 60 0 SHEET 2 D 6 ARG B 34 ALA B 39 1 N VAL B 37 O ILE B 59 SHEET 3 D 6 GLN B 4 THR B 10 1 N PHE B 6 O ARG B 34 SHEET 4 D 6 LYS B 97 MET B 101 1 O VAL B 99 N VAL B 7 SHEET 5 D 6 PHE B 132 TYR B 139 -1 O PHE B 137 N PHE B 100 SHEET 6 D 6 SER B 121 PRO B 124 -1 N SER B 121 O VAL B 138 SHEET 1 E 3 THR B 105 VAL B 107 0 SHEET 2 E 3 VAL B 210 HIS B 212 -1 O VAL B 211 N LEU B 106 SHEET 3 E 3 LEU B 189 SER B 190 1 N LEU B 189 O HIS B 212 SHEET 1 F 2 THR B 223 ASP B 225 0 SHEET 2 F 2 SER B 230 LYS B 232 -1 O SER B 230 N ASP B 225 LINK OD2 ASP A 102 MN MN A 264 1555 1555 2.00 LINK OD1 ASP A 104 MN MN A 264 1555 1555 1.99 LINK OD2 ASP A 104 MN MN A 264 1555 1555 2.02 LINK NE2 HIS A 212 MN MN A 264 1555 1555 2.10 LINK MN MN A 264 O1A UPG A 265 1555 1555 1.97 LINK MN MN A 264 O1B UPG A 265 1555 1555 1.98 LINK OD2 ASP B 102 MN MN B 263 1555 1555 1.97 LINK OD1 ASP B 104 MN MN B 263 1555 1555 1.99 LINK OD2 ASP B 104 MN MN B 263 1555 1555 2.50 LINK NE2 HIS B 212 MN MN B 263 1555 1555 2.14 LINK MN MN B 263 O1B UPG B 264 1555 1555 1.97 LINK MN MN B 263 O1A UPG B 264 1555 1555 1.99 CISPEP 1 GLU A 119 LEU A 120 0 -15.59 CISPEP 2 GLU B 119 LEU B 120 0 -9.49 CRYST1 46.415 46.590 69.904 79.54 88.75 75.83 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021545 -0.005439 0.000527 0.00000 SCALE2 0.000000 0.022137 -0.004094 0.00000 SCALE3 0.000000 0.000000 0.014551 0.00000