HEADER TRANSFERASE 31-JUL-11 3T7V TITLE CRYSTAL STRUCTURE OF METHYLORNITHINE SYNTHASE (PYLB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLORNITHINE SYNTHASE PYLB; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA BARKERI; SOURCE 3 ORGANISM_TAXID: 269797; SOURCE 4 STRAIN: FUSARO / DSM 804; SOURCE 5 GENE: MBAR_A0838; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SOLUBL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B:SUMO KEYWDS TIM-BARREL FOLD, MUTASE, [4FE-4S]-CLUSTER, SAM, LYSINE, 3- KEYWDS 2 METHYLORNITHINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.QUITTERER,A.LIST,W.EISENREICH,A.BACHER,M.GROLL REVDAT 3 28-FEB-24 3T7V 1 REMARK LINK REVDAT 2 18-APR-12 3T7V 1 JRNL REVDAT 1 30-NOV-11 3T7V 0 JRNL AUTH F.QUITTERER,A.LIST,W.EISENREICH,A.BACHER,M.GROLL JRNL TITL CRYSTAL STRUCTURE OF METHYLORNITHINE SYNTHASE (PYLB): JRNL TITL 2 INSIGHTS INTO THE PYRROLYSINE BIOSYNTHESIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 1339 2012 JRNL REFN ISSN 1433-7851 JRNL PMID 22095926 JRNL DOI 10.1002/ANIE.201106765 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2904 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2804 ; 0.029 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3828 ; 2.576 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 5.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;35.165 ;23.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;12.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.289 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2096 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 1.418 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2713 ; 2.529 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 3.188 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1055 ; 4.963 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2802 ; 8.312 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 101 ;36.259 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2963 ;14.847 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2078 45.9911 28.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1565 REMARK 3 T33: 0.0916 T12: -0.1108 REMARK 3 T13: 0.0424 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.1219 L22: 1.0135 REMARK 3 L33: 1.7544 L12: 1.4642 REMARK 3 L13: -1.9274 L23: -1.3329 REMARK 3 S TENSOR REMARK 3 S11: 0.3563 S12: -0.3783 S13: -0.0018 REMARK 3 S21: 0.2763 S22: -0.3039 S23: 0.0149 REMARK 3 S31: -0.3578 S32: 0.3388 S33: -0.0524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2500 45.5562 9.4658 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.0972 REMARK 3 T33: 0.1020 T12: 0.0061 REMARK 3 T13: 0.0194 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.2413 L22: 0.3478 REMARK 3 L33: 0.4797 L12: 0.1358 REMARK 3 L13: -0.2493 L23: 0.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.0453 S13: 0.0781 REMARK 3 S21: 0.0105 S22: 0.0326 S23: 0.0632 REMARK 3 S31: -0.0460 S32: -0.0186 S33: -0.0780 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 57.8270 33.5713 -1.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.1080 REMARK 3 T33: 0.0936 T12: -0.0135 REMARK 3 T13: -0.0001 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.2894 L22: 0.2517 REMARK 3 L33: 0.1410 L12: 0.1652 REMARK 3 L13: -0.1340 L23: -0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0281 S13: -0.0202 REMARK 3 S21: 0.0213 S22: 0.0291 S23: -0.0326 REMARK 3 S31: 0.0010 S32: -0.0075 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8764 27.1283 12.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1454 REMARK 3 T33: 0.1075 T12: -0.0006 REMARK 3 T13: -0.0155 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.3160 L22: 2.2931 REMARK 3 L33: 0.3403 L12: 0.8319 REMARK 3 L13: -0.3168 L23: -0.8818 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.0515 S13: -0.0659 REMARK 3 S21: 0.1032 S22: -0.0557 S23: -0.1013 REMARK 3 S31: -0.0436 S32: 0.0066 S33: 0.0315 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 49.6308 34.4005 15.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1179 REMARK 3 T33: 0.1001 T12: -0.0067 REMARK 3 T13: 0.0024 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.7979 L22: 0.0567 REMARK 3 L33: 0.1480 L12: 0.0300 REMARK 3 L13: -0.2879 L23: -0.0491 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.0104 S13: 0.0183 REMARK 3 S21: 0.0615 S22: 0.0028 S23: 0.0015 REMARK 3 S31: -0.0140 S32: -0.0016 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8590 37.0055 2.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.1310 REMARK 3 T33: 0.0976 T12: -0.0103 REMARK 3 T13: 0.0044 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.3317 L22: 0.0848 REMARK 3 L33: 1.0723 L12: 0.1046 REMARK 3 L13: 0.3705 L23: 0.2767 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.0297 S13: 0.0900 REMARK 3 S21: 0.0216 S22: -0.0059 S23: 0.0257 REMARK 3 S31: -0.0233 S32: -0.0843 S33: 0.0319 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8931 46.0338 10.5190 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.1015 REMARK 3 T33: 0.1081 T12: 0.0070 REMARK 3 T13: 0.0254 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4370 L22: 0.4133 REMARK 3 L33: 0.3436 L12: 0.2351 REMARK 3 L13: -0.3016 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: 0.0393 S13: 0.1311 REMARK 3 S21: 0.0870 S22: -0.0113 S23: 0.0809 REMARK 3 S31: -0.0461 S32: -0.0462 S33: -0.0921 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 348 REMARK 3 RESIDUE RANGE : A 991 A 993 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7392 50.0544 -0.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.0961 REMARK 3 T33: 0.1130 T12: 0.0101 REMARK 3 T13: 0.0091 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.3860 L22: 0.6400 REMARK 3 L33: 0.0974 L12: 0.3218 REMARK 3 L13: -0.1349 L23: 0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.0694 S13: 0.0879 REMARK 3 S21: 0.0136 S22: 0.0142 S23: 0.0516 REMARK 3 S31: -0.0208 S32: -0.0400 S33: -0.0519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3T7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : FIXED EXIT DOUBLE, CHANNEL DCM REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : 0.52500 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HYDROCHLORIDE, 200 MM REMARK 280 MGCL2, 25% PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.98333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.98333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 MET A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 PHE A 10 REMARK 465 ASP A 11 REMARK 465 GLY A 349 REMARK 465 CYS A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 431 O HOH A 650 1.61 REMARK 500 O HOH A 595 O HOH A 650 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 650 O HOH A 660 5565 2.04 REMARK 500 O HOH A 650 O HOH A 661 5565 2.08 REMARK 500 OE1 GLN A 306 O HOH A 551 6764 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 23 CB - CG - CD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 150 CB - CG - SD ANGL. DEV. = -20.1 DEGREES REMARK 500 LYS A 180 CD - CE - NZ ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 MET A 226 CG - SD - CE ANGL. DEV. = -16.2 DEGREES REMARK 500 MET A 237 CG - SD - CE ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 171 -49.54 76.62 REMARK 500 LEU A 181 -67.25 -98.45 REMARK 500 LYS A 253 52.68 -103.06 REMARK 500 GLU A 281 10.59 -150.66 REMARK 500 ASP A 304 -106.53 73.58 REMARK 500 SER A 305 124.79 60.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 991 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 71 SG REMARK 620 2 SF4 A 991 S1 119.1 REMARK 620 3 SF4 A 991 S3 104.8 103.5 REMARK 620 4 SF4 A 991 S4 115.7 104.9 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 991 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 75 SG REMARK 620 2 SF4 A 991 S1 107.1 REMARK 620 3 SF4 A 991 S2 114.1 107.3 REMARK 620 4 SF4 A 991 S3 118.0 104.6 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 991 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 78 SG REMARK 620 2 SF4 A 991 S1 108.6 REMARK 620 3 SF4 A 991 S2 109.5 106.9 REMARK 620 4 SF4 A 991 S4 121.5 104.3 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 991 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 992 O REMARK 620 2 SF4 A 991 S2 92.1 REMARK 620 3 SF4 A 991 S3 90.0 100.2 REMARK 620 4 SF4 A 991 S4 161.4 98.2 103.3 REMARK 620 5 SAM A 992 N 76.0 157.9 98.4 89.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MD0 A 993 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R30 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN SYNTHASE REMARK 900 RELATED ID: 3CIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HYDE DBREF 3T7V A 1 350 UNP Q46E78 Q46E78_METBF 1 350 SEQRES 1 A 350 MET ILE GLN LYS MET ALA LEU ASP GLU PHE ASP SER LEU SEQRES 2 A 350 GLY ASP LYS VAL ILE GLU GLY TYR GLN LEU THR ASP ASN SEQRES 3 A 350 ASP LEU ARG THR LEU LEU SER LEU GLU SER LYS GLU GLY SEQRES 4 A 350 LEU GLU ARG LEU TYR SER ALA ALA ARG LYS VAL ARG ASP SEQRES 5 A 350 HIS TYR PHE GLY ASN ARG VAL PHE LEU ASN CYS PHE ILE SEQRES 6 A 350 TYR PHE SER THR TYR CYS LYS ASN GLN CYS SER PHE CYS SEQRES 7 A 350 TYR TYR ASN CYS ARG ASN GLU ILE ASN ARG TYR ARG LEU SEQRES 8 A 350 THR MET GLU GLU ILE LYS GLU THR CYS LYS THR LEU LYS SEQRES 9 A 350 GLY ALA GLY PHE HIS MET VAL ASP LEU THR MET GLY GLU SEQRES 10 A 350 ASP PRO TYR TYR TYR GLU ASP PRO ASN ARG PHE VAL GLU SEQRES 11 A 350 LEU VAL GLN ILE VAL LYS GLU GLU LEU GLY LEU PRO ILE SEQRES 12 A 350 MET ILE SER PRO GLY LEU MET ASP ASN ALA THR LEU LEU SEQRES 13 A 350 LYS ALA ARG GLU LYS GLY ALA ASN PHE LEU ALA LEU TYR SEQRES 14 A 350 GLN GLU THR TYR ASP THR GLU LEU TYR ARG LYS LEU ARG SEQRES 15 A 350 VAL GLY GLN SER PHE ASP GLY ARG VAL ASN ALA ARG ARG SEQRES 16 A 350 PHE ALA LYS GLN GLN GLY TYR CYS VAL GLU ASP GLY ILE SEQRES 17 A 350 LEU THR GLY VAL GLY ASN ASP ILE GLU SER THR ILE LEU SEQRES 18 A 350 SER LEU ARG GLY MET SER THR ASN ASP PRO ASP MET VAL SEQRES 19 A 350 ARG VAL MET THR PHE LEU PRO GLN GLU GLY THR PRO LEU SEQRES 20 A 350 GLU GLY PHE ARG ASP LYS SER ASN LEU SER GLU LEU LYS SEQRES 21 A 350 ILE ILE SER VAL LEU ARG LEU MET PHE PRO LYS ARG LEU SEQRES 22 A 350 ILE PRO ALA SER LEU ASP LEU GLU GLY ILE ASP GLY MET SEQRES 23 A 350 VAL LEU ARG LEU ASN ALA GLY ALA ASN ILE VAL THR SER SEQRES 24 A 350 ILE LEU PRO PRO ASP SER GLN LEU GLU GLY VAL ALA ASN SEQRES 25 A 350 TYR ASP ARG ASP LEU GLU GLU ARG ASP ARG ASP ILE LYS SEQRES 26 A 350 SER VAL VAL ARG ARG LEU GLU ILE MET GLY MET LYS PRO SEQRES 27 A 350 ALA ARG GLN ALA ASP PHE GLU ALA VAL LEU GLY CYS HET SF4 A 991 8 HET SAM A 992 31 HET MD0 A 993 10 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAM S-ADENOSYLMETHIONINE HETNAM MD0 5-AMINO-D-ISOLEUCINE FORMUL 2 SF4 FE4 S4 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 MD0 C6 H14 N2 O2 FORMUL 5 HOH *315(H2 O) HELIX 1 1 SER A 12 GLU A 19 1 8 HELIX 2 2 THR A 24 SER A 33 1 10 HELIX 3 3 SER A 36 GLY A 56 1 21 HELIX 4 4 THR A 92 LYS A 104 1 13 HELIX 5 5 ASP A 118 ASP A 124 1 7 HELIX 6 6 PRO A 125 GLY A 140 1 16 HELIX 7 7 ASP A 151 LYS A 161 1 11 HELIX 8 8 ASP A 174 ARG A 182 1 9 HELIX 9 9 SER A 186 GLN A 200 1 15 HELIX 10 10 ASP A 215 ASN A 229 1 15 HELIX 11 11 SER A 257 PHE A 269 1 13 HELIX 12 12 LEU A 278 ALA A 292 1 15 HELIX 13 13 ASP A 323 GLY A 335 1 13 HELIX 14 14 ARG A 340 ALA A 346 1 7 SHEET 1 A 8 MET A 233 THR A 238 0 SHEET 2 A 8 CYS A 203 THR A 210 1 N THR A 210 O MET A 237 SHEET 3 A 8 ALA A 163 ALA A 167 1 N ASN A 164 O CYS A 203 SHEET 4 A 8 ILE A 143 SER A 146 1 N ILE A 145 O ALA A 167 SHEET 5 A 8 MET A 110 MET A 115 1 N VAL A 111 O MET A 144 SHEET 6 A 8 ARG A 58 SER A 68 1 N CYS A 63 O ASP A 112 SHEET 7 A 8 ILE A 296 ILE A 300 1 O ILE A 300 N PHE A 64 SHEET 8 A 8 PRO A 275 SER A 277 1 N ALA A 276 O ILE A 296 SHEET 1 B 7 MET A 233 THR A 238 0 SHEET 2 B 7 CYS A 203 THR A 210 1 N THR A 210 O MET A 237 SHEET 3 B 7 ALA A 163 ALA A 167 1 N ASN A 164 O CYS A 203 SHEET 4 B 7 ILE A 143 SER A 146 1 N ILE A 145 O ALA A 167 SHEET 5 B 7 MET A 110 MET A 115 1 N VAL A 111 O MET A 144 SHEET 6 B 7 ARG A 58 SER A 68 1 N CYS A 63 O ASP A 112 SHEET 7 B 7 LYS A 337 PRO A 338 1 O LYS A 337 N VAL A 59 LINK SG CYS A 71 FE2 SF4 A 991 1555 1555 2.29 LINK SG CYS A 75 FE4 SF4 A 991 1555 1555 2.34 LINK SG CYS A 78 FE3 SF4 A 991 1555 1555 2.33 LINK FE1 SF4 A 991 O SAM A 992 1555 1555 2.18 LINK FE1 SF4 A 991 N SAM A 992 1555 1555 2.18 SITE 1 AC1 7 CYS A 71 ASN A 73 CYS A 75 CYS A 78 SITE 2 AC1 7 ASN A 81 ARG A 182 SAM A 992 SITE 1 AC2 19 PHE A 77 THR A 114 MET A 115 TYR A 169 SITE 2 AC2 19 GLU A 171 ARG A 182 ARG A 190 LEU A 209 SITE 3 AC2 19 MET A 237 THR A 238 PHE A 239 LEU A 240 SITE 4 AC2 19 GLN A 242 VAL A 310 HOH A 354 HOH A 359 SITE 5 AC2 19 HOH A 363 SF4 A 991 MD0 A 993 SITE 1 AC3 12 PHE A 64 ASP A 112 SER A 146 TYR A 169 SITE 2 AC3 12 ARG A 235 SER A 277 ASP A 279 THR A 298 SITE 3 AC3 12 SER A 299 HOH A 357 HOH A 362 SAM A 992 CRYST1 77.020 77.020 104.950 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012984 0.007496 0.000000 0.00000 SCALE2 0.000000 0.014992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009528 0.00000