HEADER ISOMERASE 01-AUG-11 3T8N TITLE CRYSTAL STRUCTURE OF KETOSTEROID ISOMERASE Y16AD103A FROM PSEUDOMONAS TITLE 2 PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROID DELTA-ISOMERASE; COMPND 3 CHAIN: A, B, D, F; COMPND 4 SYNONYM: DELTA(5)-3-KETOSTEROID ISOMERASE; COMPND 5 EC: 5.3.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_COMMON: ARTHROBACTER SIDEROCAPSULATUS; SOURCE 4 ORGANISM_TAXID: 303; SOURCE 5 GENE: KSI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GONZALEZ,Y.TSAI,J.SCHWANS,F.SUNDEN,D.HERSCHLAG REVDAT 4 16-OCT-24 3T8N 1 REMARK REVDAT 3 13-SEP-23 3T8N 1 REMARK SEQADV REVDAT 2 28-DEC-11 3T8N 1 JRNL REVDAT 1 23-NOV-11 3T8N 0 JRNL AUTH J.P.SCHWANS,F.SUNDEN,A.GONZALEZ,Y.TSAI,D.HERSCHLAG JRNL TITL EVALUATING THE CATALYTIC CONTRIBUTION FROM THE OXYANION HOLE JRNL TITL 2 IN KETOSTEROID ISOMERASE. JRNL REF J.AM.CHEM.SOC. V. 133 20052 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 22053826 JRNL DOI 10.1021/JA208050T REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 77108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4448 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4550 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3073 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6234 ; 1.521 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7452 ; 0.934 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 6.120 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;34.330 ;23.915 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;15.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;14.645 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5427 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 952 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2838 ; 0.934 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 0.256 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4611 ; 1.652 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 2.354 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1621 ; 3.719 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5820 -36.5590 13.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.1349 REMARK 3 T33: 0.0623 T12: 0.0049 REMARK 3 T13: 0.0100 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.7720 L22: 0.3341 REMARK 3 L33: 1.2311 L12: 0.0553 REMARK 3 L13: 0.2440 L23: -0.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.2194 S13: 0.0284 REMARK 3 S21: 0.0770 S22: -0.0406 S23: -0.0335 REMARK 3 S31: -0.0280 S32: -0.0232 S33: 0.0293 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2730 -39.8970 -7.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.1461 REMARK 3 T33: 0.0551 T12: -0.0032 REMARK 3 T13: 0.0167 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.1569 L22: 0.3579 REMARK 3 L33: 0.8772 L12: 0.1973 REMARK 3 L13: -0.0766 L23: 0.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: 0.1740 S13: -0.0134 REMARK 3 S21: -0.0670 S22: 0.0114 S23: 0.0165 REMARK 3 S31: 0.0032 S32: -0.1376 S33: 0.0302 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 127 REMARK 3 ORIGIN FOR THE GROUP (A): -60.8740 -34.1470 -24.2560 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.1830 REMARK 3 T33: 0.0482 T12: 0.0152 REMARK 3 T13: 0.0054 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.4689 L22: 0.9614 REMARK 3 L33: 1.5810 L12: 0.1950 REMARK 3 L13: -0.4322 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: -0.2087 S13: -0.0631 REMARK 3 S21: 0.1330 S22: -0.0406 S23: -0.0703 REMARK 3 S31: 0.0701 S32: 0.0209 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 130 REMARK 3 ORIGIN FOR THE GROUP (A): -67.7830 -32.4840 -46.2250 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.3317 REMARK 3 T33: 0.0587 T12: -0.0274 REMARK 3 T13: -0.0309 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 1.4548 L22: 2.8416 REMARK 3 L33: 2.3362 L12: 0.7016 REMARK 3 L13: -0.9956 L23: -1.2144 REMARK 3 S TENSOR REMARK 3 S11: -0.0760 S12: 0.4080 S13: 0.0894 REMARK 3 S21: -0.3661 S22: 0.2818 S23: 0.2605 REMARK 3 S31: 0.1927 S32: -0.5864 S33: -0.2058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.465 REMARK 200 RESOLUTION RANGE LOW (A) : 38.322 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : 0.87200 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3RGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 40 MM REMARK 280 POTASSIUM PHOSPHATE, 1 MM EDTA, 2 MM DTT, PH 7.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.75700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.32200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.75700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.32200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 131 REMARK 465 MET B 1 REMARK 465 ARG D 128 REMARK 465 GLU D 129 REMARK 465 PRO D 130 REMARK 465 GLN D 131 REMARK 465 GLN F 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS F 97 CB CYS F 97 SG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 65 65.65 -101.24 REMARK 500 LYS B 65 59.54 -91.38 REMARK 500 TRP B 120 158.15 178.79 REMARK 500 TRP D 92 132.06 140.95 REMARK 500 ASN F 2 -179.36 70.92 REMARK 500 ASP F 40 103.03 -160.66 REMARK 500 LYS F 65 36.81 -94.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDT D 135 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RGR RELATED DB: PDB REMARK 900 RELATED ID: 3T8U RELATED DB: PDB REMARK 900 RELATED ID: 3M8C RELATED DB: PDB DBREF 3T8N A 1 131 UNP P07445 SDIS_PSEPU 1 131 DBREF 3T8N B 1 131 UNP P07445 SDIS_PSEPU 1 131 DBREF 3T8N D 1 131 UNP P07445 SDIS_PSEPU 1 131 DBREF 3T8N F 1 131 UNP P07445 SDIS_PSEPU 1 131 SEQADV 3T8N ALA A 16 UNP P07445 TYR 16 ENGINEERED MUTATION SEQADV 3T8N ALA A 103 UNP P07445 ASP 103 ENGINEERED MUTATION SEQADV 3T8N ALA B 16 UNP P07445 TYR 16 ENGINEERED MUTATION SEQADV 3T8N ALA B 103 UNP P07445 ASP 103 ENGINEERED MUTATION SEQADV 3T8N ALA D 16 UNP P07445 TYR 16 ENGINEERED MUTATION SEQADV 3T8N ALA D 103 UNP P07445 ASP 103 ENGINEERED MUTATION SEQADV 3T8N ALA F 16 UNP P07445 TYR 16 ENGINEERED MUTATION SEQADV 3T8N ALA F 103 UNP P07445 ASP 103 ENGINEERED MUTATION SEQRES 1 A 131 MET ASN LEU PRO THR ALA GLN GLU VAL GLN GLY LEU MET SEQRES 2 A 131 ALA ARG ALA ILE GLU LEU VAL ASP VAL GLY ASP ILE GLU SEQRES 3 A 131 ALA ILE VAL GLN MET TYR ALA ASP ASP ALA THR VAL GLU SEQRES 4 A 131 ASP PRO PHE GLY GLN PRO PRO ILE HIS GLY ARG GLU GLN SEQRES 5 A 131 ILE ALA ALA PHE TYR ARG GLN GLY LEU GLY GLY GLY LYS SEQRES 6 A 131 VAL ARG ALA CYS LEU THR GLY PRO VAL ARG ALA SER HIS SEQRES 7 A 131 ASN GLY CYS GLY ALA MET PRO PHE ARG VAL GLU MET VAL SEQRES 8 A 131 TRP ASN GLY GLN PRO CYS ALA LEU ASP VAL ILE ALA VAL SEQRES 9 A 131 MET ARG PHE ASP GLU HIS GLY ARG ILE GLN THR MET GLN SEQRES 10 A 131 ALA TYR TRP SER GLU VAL ASN LEU SER VAL ARG GLU PRO SEQRES 11 A 131 GLN SEQRES 1 B 131 MET ASN LEU PRO THR ALA GLN GLU VAL GLN GLY LEU MET SEQRES 2 B 131 ALA ARG ALA ILE GLU LEU VAL ASP VAL GLY ASP ILE GLU SEQRES 3 B 131 ALA ILE VAL GLN MET TYR ALA ASP ASP ALA THR VAL GLU SEQRES 4 B 131 ASP PRO PHE GLY GLN PRO PRO ILE HIS GLY ARG GLU GLN SEQRES 5 B 131 ILE ALA ALA PHE TYR ARG GLN GLY LEU GLY GLY GLY LYS SEQRES 6 B 131 VAL ARG ALA CYS LEU THR GLY PRO VAL ARG ALA SER HIS SEQRES 7 B 131 ASN GLY CYS GLY ALA MET PRO PHE ARG VAL GLU MET VAL SEQRES 8 B 131 TRP ASN GLY GLN PRO CYS ALA LEU ASP VAL ILE ALA VAL SEQRES 9 B 131 MET ARG PHE ASP GLU HIS GLY ARG ILE GLN THR MET GLN SEQRES 10 B 131 ALA TYR TRP SER GLU VAL ASN LEU SER VAL ARG GLU PRO SEQRES 11 B 131 GLN SEQRES 1 D 131 MET ASN LEU PRO THR ALA GLN GLU VAL GLN GLY LEU MET SEQRES 2 D 131 ALA ARG ALA ILE GLU LEU VAL ASP VAL GLY ASP ILE GLU SEQRES 3 D 131 ALA ILE VAL GLN MET TYR ALA ASP ASP ALA THR VAL GLU SEQRES 4 D 131 ASP PRO PHE GLY GLN PRO PRO ILE HIS GLY ARG GLU GLN SEQRES 5 D 131 ILE ALA ALA PHE TYR ARG GLN GLY LEU GLY GLY GLY LYS SEQRES 6 D 131 VAL ARG ALA CYS LEU THR GLY PRO VAL ARG ALA SER HIS SEQRES 7 D 131 ASN GLY CYS GLY ALA MET PRO PHE ARG VAL GLU MET VAL SEQRES 8 D 131 TRP ASN GLY GLN PRO CYS ALA LEU ASP VAL ILE ALA VAL SEQRES 9 D 131 MET ARG PHE ASP GLU HIS GLY ARG ILE GLN THR MET GLN SEQRES 10 D 131 ALA TYR TRP SER GLU VAL ASN LEU SER VAL ARG GLU PRO SEQRES 11 D 131 GLN SEQRES 1 F 131 MET ASN LEU PRO THR ALA GLN GLU VAL GLN GLY LEU MET SEQRES 2 F 131 ALA ARG ALA ILE GLU LEU VAL ASP VAL GLY ASP ILE GLU SEQRES 3 F 131 ALA ILE VAL GLN MET TYR ALA ASP ASP ALA THR VAL GLU SEQRES 4 F 131 ASP PRO PHE GLY GLN PRO PRO ILE HIS GLY ARG GLU GLN SEQRES 5 F 131 ILE ALA ALA PHE TYR ARG GLN GLY LEU GLY GLY GLY LYS SEQRES 6 F 131 VAL ARG ALA CYS LEU THR GLY PRO VAL ARG ALA SER HIS SEQRES 7 F 131 ASN GLY CYS GLY ALA MET PRO PHE ARG VAL GLU MET VAL SEQRES 8 F 131 TRP ASN GLY GLN PRO CYS ALA LEU ASP VAL ILE ALA VAL SEQRES 9 F 131 MET ARG PHE ASP GLU HIS GLY ARG ILE GLN THR MET GLN SEQRES 10 F 131 ALA TYR TRP SER GLU VAL ASN LEU SER VAL ARG GLU PRO SEQRES 11 F 131 GLN HET SO4 A 132 5 HET SO4 A 133 5 HET SO4 D 132 5 HET SO4 D 133 5 HET SO4 D 134 5 HET EDT D 135 20 HETNAM SO4 SULFATE ION HETNAM EDT {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL- HETNAM 2 EDT AMINO}-ACETIC ACID FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 EDT C10 H16 N2 O8 FORMUL 11 HOH *214(H2 O) HELIX 1 1 THR A 5 GLY A 23 1 19 HELIX 2 2 ASP A 24 MET A 31 1 8 HELIX 3 3 GLY A 49 GLY A 62 1 14 HELIX 4 4 SER A 121 VAL A 123 5 3 HELIX 5 5 THR B 5 GLY B 23 1 19 HELIX 6 6 ASP B 24 MET B 31 1 8 HELIX 7 7 GLY B 49 GLY B 62 1 14 HELIX 8 8 SER B 121 VAL B 123 5 3 HELIX 9 9 THR D 5 VAL D 22 1 18 HELIX 10 10 ASP D 24 MET D 31 1 8 HELIX 11 11 GLY D 49 GLY D 62 1 14 HELIX 12 12 SER D 121 VAL D 123 5 3 HELIX 13 13 THR F 5 ASP F 21 1 17 HELIX 14 14 ASP F 24 MET F 31 1 8 HELIX 15 15 GLY F 49 LEU F 61 1 13 HELIX 16 16 SER F 121 VAL F 123 5 3 SHEET 1 A 6 ILE A 47 HIS A 48 0 SHEET 2 A 6 TYR A 32 GLU A 39 -1 N VAL A 38 O ILE A 47 SHEET 3 A 6 ILE A 113 TYR A 119 1 O ILE A 113 N ALA A 33 SHEET 4 A 6 GLN A 95 PHE A 107 -1 N ARG A 106 O GLN A 114 SHEET 5 A 6 CYS A 81 TRP A 92 -1 N PHE A 86 O VAL A 101 SHEET 6 A 6 ARG A 75 ALA A 76 -1 N ARG A 75 O ALA A 83 SHEET 1 B 4 ARG A 67 LEU A 70 0 SHEET 2 B 4 CYS A 81 TRP A 92 -1 O GLU A 89 N ARG A 67 SHEET 3 B 4 GLN A 95 PHE A 107 -1 O VAL A 101 N PHE A 86 SHEET 4 B 4 LEU A 125 VAL A 127 -1 O SER A 126 N ALA A 98 SHEET 1 C 6 ILE B 47 HIS B 48 0 SHEET 2 C 6 TYR B 32 GLU B 39 -1 N VAL B 38 O ILE B 47 SHEET 3 C 6 ILE B 113 TYR B 119 1 O ILE B 113 N ALA B 33 SHEET 4 C 6 GLN B 95 PHE B 107 -1 N ILE B 102 O TYR B 119 SHEET 5 C 6 CYS B 81 TRP B 92 -1 N MET B 90 O CYS B 97 SHEET 6 C 6 ARG B 75 ALA B 76 -1 N ARG B 75 O ALA B 83 SHEET 1 D 4 ARG B 67 LEU B 70 0 SHEET 2 D 4 CYS B 81 TRP B 92 -1 O GLU B 89 N ARG B 67 SHEET 3 D 4 GLN B 95 PHE B 107 -1 O CYS B 97 N MET B 90 SHEET 4 D 4 LEU B 125 VAL B 127 -1 O SER B 126 N ALA B 98 SHEET 1 E 6 ILE D 47 HIS D 48 0 SHEET 2 E 6 TYR D 32 GLU D 39 -1 N VAL D 38 O ILE D 47 SHEET 3 E 6 ILE D 113 TYR D 119 1 O ALA D 118 N GLU D 39 SHEET 4 E 6 PRO D 96 PHE D 107 -1 N ARG D 106 O GLN D 114 SHEET 5 E 6 CYS D 81 VAL D 91 -1 N PHE D 86 O VAL D 101 SHEET 6 E 6 ARG D 75 ALA D 76 -1 N ARG D 75 O ALA D 83 SHEET 1 F 4 ARG D 67 LEU D 70 0 SHEET 2 F 4 CYS D 81 VAL D 91 -1 O GLU D 89 N ARG D 67 SHEET 3 F 4 PRO D 96 PHE D 107 -1 O VAL D 101 N PHE D 86 SHEET 4 F 4 LEU D 125 SER D 126 -1 O SER D 126 N ALA D 98 SHEET 1 G 6 ILE F 47 HIS F 48 0 SHEET 2 G 6 TYR F 32 GLU F 39 -1 N VAL F 38 O ILE F 47 SHEET 3 G 6 ILE F 113 TYR F 119 1 O ILE F 113 N ALA F 33 SHEET 4 G 6 GLN F 95 PHE F 107 -1 N ILE F 102 O TYR F 119 SHEET 5 G 6 CYS F 81 TRP F 92 -1 N PHE F 86 O VAL F 101 SHEET 6 G 6 ARG F 75 ALA F 76 -1 N ARG F 75 O ALA F 83 SHEET 1 H 4 ARG F 67 LEU F 70 0 SHEET 2 H 4 CYS F 81 TRP F 92 -1 O GLU F 89 N ARG F 67 SHEET 3 H 4 GLN F 95 PHE F 107 -1 O VAL F 101 N PHE F 86 SHEET 4 H 4 LEU F 125 VAL F 127 -1 O SER F 126 N ALA F 98 SSBOND 1 CYS A 69 CYS D 69 1555 1556 2.73 SSBOND 2 CYS B 69 CYS F 69 1555 1556 2.73 CISPEP 1 ASP A 40 PRO A 41 0 3.94 CISPEP 2 GLY A 62 GLY A 63 0 1.13 CISPEP 3 GLY A 63 GLY A 64 0 0.72 CISPEP 4 ASP B 40 PRO B 41 0 2.43 CISPEP 5 ASP D 40 PRO D 41 0 1.12 CISPEP 6 TRP D 92 ASN D 93 0 -0.10 CISPEP 7 ASP F 40 PRO F 41 0 0.60 SITE 1 AC1 4 ARG A 106 THR A 115 HOH A 166 HOH A 210 SITE 1 AC2 4 GLN A 30 ARG A 50 ARG A 112 ARG B 58 SITE 1 AC3 3 HIS A 110 HIS D 110 ARG D 112 SITE 1 AC4 6 ALA D 33 ASP D 34 ASP D 35 ASP D 108 SITE 2 AC4 6 ARG D 112 HOH D 178 SITE 1 AC5 3 ARG D 106 THR D 115 HOH D 164 SITE 1 AC6 20 THR A 71 PRO A 73 THR B 71 ARG B 87 SITE 2 AC6 20 HOH B 135 THR D 71 GLY D 72 PRO D 73 SITE 3 AC6 20 ARG D 75 HOH D 147 HOH D 150 HOH D 155 SITE 4 AC6 20 HOH D 194 HOH D 195 HOH D 198 THR F 71 SITE 5 AC6 20 GLY F 72 PRO F 73 ARG F 75 HOH F 147 CRYST1 127.514 76.644 53.060 90.00 63.96 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007842 0.000000 -0.003832 0.00000 SCALE2 0.000000 0.013047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020976 0.00000