HEADER TRANSFERASE 01-AUG-11 3T8O TITLE RHODOPSIN KINASE (GRK1) L166K MUTANT AT 2.5A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-535; COMPND 5 SYNONYM: RK, G PROTEIN-COUPLED RECEPTOR KINASE 1; COMPND 6 EC: 2.7.11.14; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GRK1, RHOK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI-5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE DOMAIN, RGS HOMOLOGY (RH) DOMAIN, G-PROTEIN RECEPTOR KINASE KEYWDS 2 (GPCR), TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.G.TESMER,P.SINGH,M.R.NANCE REVDAT 4 28-FEB-24 3T8O 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3T8O 1 REMARK REVDAT 2 23-JAN-13 3T8O 1 JRNL REVDAT 1 06-JUN-12 3T8O 0 JRNL AUTH J.J.TESMER,M.R.NANCE,P.SINGH,H.LEE JRNL TITL STRUCTURE OF A MONOMERIC VARIANT OF RHODOPSIN KINASE AT 2.5 JRNL TITL 2 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 622 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22684056 JRNL DOI 10.1107/S1744309112017435 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 27797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4123 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2918 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5568 ; 1.540 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7048 ; 0.988 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.066 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;37.642 ;23.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;16.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4581 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 897 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2463 ; 0.562 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1004 ; 0.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3936 ; 1.090 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1660 ; 1.719 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1631 ; 2.847 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 532 REMARK 3 RESIDUE RANGE : A 544 A 544 REMARK 3 RESIDUE RANGE : A 545 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4797 23.7019 28.8474 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1716 REMARK 3 T33: 0.0858 T12: 0.0132 REMARK 3 T13: -0.0487 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.9811 L22: 2.3150 REMARK 3 L33: 1.6553 L12: 0.2139 REMARK 3 L13: -0.5445 L23: -0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.1266 S13: 0.3203 REMARK 3 S21: -0.2466 S22: -0.0142 S23: 0.2189 REMARK 3 S31: -0.0251 S32: 0.1040 S33: -0.0403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3T8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000, 100 MM NA-CITRATE PH 4.3 REMARK 280 AND 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.77050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.90400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.43950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.77050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.90400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.43950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.77050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.90400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.43950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.77050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.90400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.43950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 ASN A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 PHE A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 PHE A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 VAL A 476 REMARK 465 TYR A 477 REMARK 465 ALA A 478 REMARK 465 LYS A 479 REMARK 465 ASN A 480 REMARK 465 SER A 488 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 LYS A 491 REMARK 465 GLY A 492 REMARK 465 PRO A 533 REMARK 465 ASP A 534 REMARK 465 GLY A 535 REMARK 465 VAL A 536 REMARK 465 ASP A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 439 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 439 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 474 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 56 39.57 -99.81 REMARK 500 LEU A 121 40.08 -103.39 REMARK 500 ALA A 136 140.23 178.74 REMARK 500 ALA A 138 -146.91 -154.38 REMARK 500 GLN A 156 -116.29 -92.84 REMARK 500 ASP A 314 33.50 -154.23 REMARK 500 ASP A 332 86.50 66.51 REMARK 500 ASP A 367 -145.21 -126.94 REMARK 500 GLN A 429 122.37 -35.27 REMARK 500 LEU A 451 -39.31 -39.39 REMARK 500 ASP A 472 -157.08 -81.76 REMARK 500 SER A 473 95.10 -68.52 REMARK 500 ARG A 474 87.51 -163.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 564 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 332 OD1 REMARK 620 2 ATP A 562 O2B 92.3 REMARK 620 3 ATP A 562 O1G 86.5 83.0 REMARK 620 4 HOH A 581 O 83.8 98.6 170.2 REMARK 620 5 HOH A 583 O 90.3 173.9 91.7 87.2 REMARK 620 6 HOH A 584 O 153.5 111.6 107.1 81.5 67.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 564 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 544 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C4W RELATED DB: PDB REMARK 900 RELATED ID: 3C4X RELATED DB: PDB DBREF 3T8O A 1 535 UNP P28327 RK_BOVIN 1 535 SEQADV 3T8O LYS A 166 UNP P28327 LEU 166 ENGINEERED MUTATION SEQADV 3T8O VAL A 536 UNP P28327 EXPRESSION TAG SEQADV 3T8O ASP A 537 UNP P28327 EXPRESSION TAG SEQADV 3T8O HIS A 538 UNP P28327 EXPRESSION TAG SEQADV 3T8O HIS A 539 UNP P28327 EXPRESSION TAG SEQADV 3T8O HIS A 540 UNP P28327 EXPRESSION TAG SEQADV 3T8O HIS A 541 UNP P28327 EXPRESSION TAG SEQADV 3T8O HIS A 542 UNP P28327 EXPRESSION TAG SEQADV 3T8O HIS A 543 UNP P28327 EXPRESSION TAG SEQRES 1 A 543 MET ASP PHE GLY SER LEU GLU THR VAL VAL ALA ASN SER SEQRES 2 A 543 ALA PHE ILE ALA ALA ARG GLY SER PHE ASP ALA SER SER SEQRES 3 A 543 GLY PRO ALA SER ARG ASP ARG LYS TYR LEU ALA ARG LEU SEQRES 4 A 543 LYS LEU PRO PRO LEU SER LYS CYS GLU ALA LEU ARG GLU SEQRES 5 A 543 SER LEU ASP LEU GLY PHE GLU GLY MET CYS LEU GLU GLN SEQRES 6 A 543 PRO ILE GLY LYS ARG LEU PHE GLN GLN PHE LEU ARG THR SEQRES 7 A 543 HIS GLU GLN HIS GLY PRO ALA LEU GLN LEU TRP LYS ASP SEQRES 8 A 543 ILE GLU ASP TYR ASP THR ALA ASP ASP ALA LEU ARG PRO SEQRES 9 A 543 GLN LYS ALA GLN ALA LEU ARG ALA ALA TYR LEU GLU PRO SEQRES 10 A 543 GLN ALA GLN LEU PHE CYS SER PHE LEU ASP ALA GLU THR SEQRES 11 A 543 VAL ALA ARG ALA ARG ALA GLY ALA GLY ASP GLY LEU PHE SEQRES 12 A 543 GLN PRO LEU LEU ARG ALA VAL LEU ALA HIS LEU GLY GLN SEQRES 13 A 543 ALA PRO PHE GLN GLU PHE LEU ASP SER LYS TYR PHE LEU SEQRES 14 A 543 ARG PHE LEU GLN TRP LYS TRP LEU GLU ALA GLN PRO MET SEQRES 15 A 543 GLY GLU ASP TRP PHE LEU ASP PHE ARG VAL LEU GLY ARG SEQRES 16 A 543 GLY GLY PHE GLY GLU VAL PHE ALA CYS GLN MET LYS ALA SEQRES 17 A 543 THR GLY LYS LEU TYR ALA CYS LYS LYS LEU ASN LYS LYS SEQRES 18 A 543 ARG LEU LYS LYS ARG LYS GLY TYR GLN GLY ALA MET VAL SEQRES 19 A 543 GLU LYS LYS ILE LEU ALA LYS VAL HIS SER ARG PHE ILE SEQRES 20 A 543 VAL SER LEU ALA TYR ALA PHE GLU THR LYS THR ASP LEU SEQRES 21 A 543 CYS LEU VAL MET THR ILE MET ASN GLY GLY ASP ILE ARG SEQRES 22 A 543 TYR HIS ILE TYR ASN VAL ASP GLU ASP ASN PRO GLY PHE SEQRES 23 A 543 GLN GLU PRO ARG ALA ILE PHE TYR THR ALA GLN ILE VAL SEQRES 24 A 543 SER GLY LEU GLU HIS LEU HIS GLN ARG ASN ILE ILE TYR SEQRES 25 A 543 ARG ASP LEU LYS PRO GLU ASN VAL LEU LEU ASP ASP ASP SEQRES 26 A 543 GLY ASN VAL ARG ILE SER ASP LEU GLY LEU ALA VAL GLU SEQRES 27 A 543 LEU LYS ALA GLY GLN THR LYS THR LYS GLY TYR ALA GLY SEQRES 28 A 543 THR PRO GLY PHE MET ALA PRO GLU LEU LEU LEU GLY GLU SEQRES 29 A 543 GLU TYR ASP PHE SER VAL ASP TYR PHE ALA LEU GLY VAL SEQRES 30 A 543 THR LEU TYR GLU MET ILE ALA ALA ARG GLY PRO PHE ARG SEQRES 31 A 543 ALA ARG GLY GLU LYS VAL GLU ASN LYS GLU LEU LYS GLN SEQRES 32 A 543 ARG VAL LEU GLU GLN ALA VAL THR TYR PRO ASP LYS PHE SEQRES 33 A 543 SER PRO ALA SER LYS ASP PHE CYS GLU ALA LEU LEU GLN SEQRES 34 A 543 LYS ASP PRO GLU LYS ARG LEU GLY PHE ARG ASP GLY SER SEQRES 35 A 543 CYS ASP GLY LEU ARG THR HIS PRO LEU PHE ARG ASP ILE SEQRES 36 A 543 SER TRP ARG GLN LEU GLU ALA GLY MET LEU THR PRO PRO SEQRES 37 A 543 PHE VAL PRO ASP SER ARG THR VAL TYR ALA LYS ASN ILE SEQRES 38 A 543 GLN ASP VAL GLY ALA PHE SER THR VAL LYS GLY VAL ALA SEQRES 39 A 543 PHE GLU LYS ALA ASP THR GLU PHE PHE GLN GLU PHE ALA SEQRES 40 A 543 SER GLY THR CYS PRO ILE PRO TRP GLN GLU GLU MET ILE SEQRES 41 A 543 GLU THR GLY VAL PHE GLY ASP LEU ASN VAL TRP ARG PRO SEQRES 42 A 543 ASP GLY VAL ASP HIS HIS HIS HIS HIS HIS HET ATP A 562 31 HET MG A 564 1 HET CL A 565 1 HET GOL A 544 6 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *52(H2 O) HELIX 1 1 ASP A 32 ALA A 37 1 6 HELIX 2 2 PRO A 43 GLU A 48 5 6 HELIX 3 3 ALA A 49 LEU A 54 1 6 HELIX 4 4 GLY A 57 LEU A 63 1 7 HELIX 5 5 GLN A 65 HIS A 79 1 15 HELIX 6 6 HIS A 82 ALA A 98 1 17 HELIX 7 7 ASP A 99 ALA A 101 5 3 HELIX 8 8 LEU A 102 GLU A 116 1 15 HELIX 9 9 ASP A 127 ARG A 135 1 9 HELIX 10 10 PHE A 143 GLY A 155 1 13 HELIX 11 11 GLN A 156 ASP A 164 1 9 HELIX 12 12 SER A 165 GLU A 178 1 14 HELIX 13 13 GLY A 183 ASP A 185 5 3 HELIX 14 14 LYS A 220 ARG A 226 1 7 HELIX 15 15 GLY A 228 VAL A 242 1 15 HELIX 16 16 ILE A 272 ASN A 278 1 7 HELIX 17 17 GLN A 287 GLN A 307 1 21 HELIX 18 18 LYS A 316 GLU A 318 5 3 HELIX 19 19 ALA A 357 LEU A 362 1 6 HELIX 20 20 PHE A 368 ALA A 385 1 18 HELIX 21 21 GLU A 397 GLN A 408 1 12 HELIX 22 22 SER A 417 GLN A 429 1 13 HELIX 23 23 GLY A 445 ARG A 453 5 9 HELIX 24 24 SER A 456 ALA A 462 1 7 HELIX 25 25 GLU A 496 ALA A 507 1 12 HELIX 26 26 CYS A 511 THR A 522 1 12 HELIX 27 27 GLY A 523 ASN A 529 1 7 SHEET 1 A 6 PHE A 187 ARG A 195 0 SHEET 2 A 6 GLU A 200 MET A 206 -1 O ALA A 203 N ARG A 191 SHEET 3 A 6 LEU A 212 ASN A 219 -1 O CYS A 215 N PHE A 202 SHEET 4 A 6 ASP A 259 MET A 264 -1 O MET A 264 N ALA A 214 SHEET 5 A 6 LEU A 250 GLU A 255 -1 N ALA A 251 O VAL A 263 SHEET 6 A 6 GLY A 509 THR A 510 -1 O GLY A 509 N ALA A 253 SHEET 1 B 3 GLY A 270 ASP A 271 0 SHEET 2 B 3 VAL A 320 LEU A 322 -1 O LEU A 322 N GLY A 270 SHEET 3 B 3 VAL A 328 ILE A 330 -1 O ARG A 329 N LEU A 321 SHEET 1 C 2 ILE A 310 ILE A 311 0 SHEET 2 C 2 VAL A 337 GLU A 338 -1 O VAL A 337 N ILE A 311 LINK OD1 ASP A 332 MG MG A 564 1555 1555 2.21 LINK O2B ATP A 562 MG MG A 564 1555 1555 2.18 LINK O1G ATP A 562 MG MG A 564 1555 1555 2.37 LINK MG MG A 564 O HOH A 581 1555 1555 2.24 LINK MG MG A 564 O HOH A 583 1555 1555 2.08 LINK MG MG A 564 O HOH A 584 1555 1555 2.28 SITE 1 AC1 15 LEU A 193 GLY A 196 GLY A 197 VAL A 201 SITE 2 AC1 15 LYS A 216 THR A 265 MET A 267 LEU A 321 SITE 3 AC1 15 ASP A 332 LYS A 497 GLU A 501 HOH A 545 SITE 4 AC1 15 HOH A 546 HOH A 547 MG A 564 SITE 1 AC2 5 ASP A 332 ATP A 562 HOH A 581 HOH A 583 SITE 2 AC2 5 HOH A 584 SITE 1 AC3 2 GLN A 287 ARG A 290 SITE 1 AC4 7 ASP A 367 SER A 369 GLU A 433 LYS A 434 SITE 2 AC4 7 GLY A 437 PHE A 438 HOH A 573 CRYST1 55.541 149.808 190.879 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005239 0.00000