data_3T9Y # _entry.id 3T9Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3T9Y RCSB RCSB067222 WWPDB D_1000067222 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC106663 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3T9Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Tesar, C.' 2 'Jedrzejczak, R.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of GNAT family acetyltransferase Staphylococcus aureus subsp. aureus USA300_TCH1516' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Tesar, C.' 2 primary 'Jedrzejczak, R.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 69.711 _cell.length_b 91.746 _cell.length_c 53.866 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3T9Y _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3T9Y _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 20 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Acetyltransferase, GNAT family' 17730.652 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 5 water nat water 18.015 88 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKENKIIGLSG(MSE)CK (MSE)(MSE)FYEKNAEY(MSE)RILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLNSGNRNERLSAHKLYSDNG YVSNTSGFTKQL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKENKIIGLSGMCKMMFYEKNAEY MRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLNSGNRNERLSAHKLYSDNGYVSNTSGFTKQL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC106663 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 ILE n 1 7 ILE n 1 8 THR n 1 9 ARG n 1 10 LEU n 1 11 PHE n 1 12 ASN n 1 13 ASN n 1 14 SER n 1 15 ASP n 1 16 PHE n 1 17 GLU n 1 18 LYS n 1 19 LEU n 1 20 ASN n 1 21 GLN n 1 22 LEU n 1 23 CYS n 1 24 LYS n 1 25 LEU n 1 26 TYR n 1 27 ASP n 1 28 ASP n 1 29 LEU n 1 30 GLY n 1 31 TYR n 1 32 PRO n 1 33 THR n 1 34 ASN n 1 35 GLU n 1 36 ASN n 1 37 ASP n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 ARG n 1 42 LEU n 1 43 LYS n 1 44 LYS n 1 45 ILE n 1 46 THR n 1 47 ASN n 1 48 HIS n 1 49 ASP n 1 50 ASP n 1 51 TYR n 1 52 PHE n 1 53 LEU n 1 54 LEU n 1 55 LEU n 1 56 LEU n 1 57 ILE n 1 58 LYS n 1 59 GLU n 1 60 ASN n 1 61 LYS n 1 62 ILE n 1 63 ILE n 1 64 GLY n 1 65 LEU n 1 66 SER n 1 67 GLY n 1 68 MSE n 1 69 CYS n 1 70 LYS n 1 71 MSE n 1 72 MSE n 1 73 PHE n 1 74 TYR n 1 75 GLU n 1 76 LYS n 1 77 ASN n 1 78 ALA n 1 79 GLU n 1 80 TYR n 1 81 MSE n 1 82 ARG n 1 83 ILE n 1 84 LEU n 1 85 ALA n 1 86 PHE n 1 87 VAL n 1 88 ILE n 1 89 HIS n 1 90 SER n 1 91 GLU n 1 92 PHE n 1 93 ARG n 1 94 LYS n 1 95 LYS n 1 96 GLY n 1 97 TYR n 1 98 GLY n 1 99 LYS n 1 100 ARG n 1 101 LEU n 1 102 LEU n 1 103 ALA n 1 104 ASP n 1 105 SER n 1 106 GLU n 1 107 GLU n 1 108 PHE n 1 109 SER n 1 110 LYS n 1 111 ARG n 1 112 LEU n 1 113 ASN n 1 114 CYS n 1 115 LYS n 1 116 ALA n 1 117 ILE n 1 118 THR n 1 119 LEU n 1 120 ASN n 1 121 SER n 1 122 GLY n 1 123 ASN n 1 124 ARG n 1 125 ASN n 1 126 GLU n 1 127 ARG n 1 128 LEU n 1 129 SER n 1 130 ALA n 1 131 HIS n 1 132 LYS n 1 133 LEU n 1 134 TYR n 1 135 SER n 1 136 ASP n 1 137 ASN n 1 138 GLY n 1 139 TYR n 1 140 VAL n 1 141 SER n 1 142 ASN n 1 143 THR n 1 144 SER n 1 145 GLY n 1 146 PHE n 1 147 THR n 1 148 LYS n 1 149 GLN n 1 150 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SAUSA300_1980 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain USA300 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 367830 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pMCSG7 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2FF97_STAA3 _struct_ref.pdbx_db_accession Q2FF97 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKENKIIGLSGMCKMMFYEKNAEYMRI LAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLNSGNRNERLSAHKLYSDNGYVSNTSGFTKQL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3T9Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2FF97 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3T9Y SER A 1 ? UNP Q2FF97 ? ? 'EXPRESSION TAG' -2 1 1 3T9Y ASN A 2 ? UNP Q2FF97 ? ? 'EXPRESSION TAG' -1 2 1 3T9Y ALA A 3 ? UNP Q2FF97 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3T9Y _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2M Lithium sulfate, 0.1M Tris-Cl, 40% PEG400, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-03-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97904 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97904 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3T9Y _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50 _reflns.number_all 11945 _reflns.number_obs 11346 _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.03 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 73.7 _reflns_shell.Rmerge_I_obs 0.480 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.number_unique_all 425 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3T9Y _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 81.2100 _refine.ls_number_reflns_obs 9704 _refine.ls_number_reflns_all 9704 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1758 _refine.ls_R_factor_obs 0.1758 _refine.ls_R_factor_R_work 0.1731 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2279 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 464 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.5671 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0600 _refine.aniso_B[2][2] 0.5300 _refine.aniso_B[3][3] -0.5900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9570 _refine.correlation_coeff_Fo_to_Fc_free 0.9340 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1820 _refine.overall_SU_ML 0.1100 _refine.overall_SU_B 8.9190 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 181.750 _refine.B_iso_min 15.800 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1101 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 1212 _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1170 0.013 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1557 1.264 1.989 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 139 6.000 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 56 34.791 24.107 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 236 15.729 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 19.201 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 165 0.087 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 852 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 685 1.794 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1100 3.236 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 485 3.093 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 457 5.162 4.500 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1170 1.639 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.0030 _refine_ls_shell.d_res_low 2.0550 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 42.0300 _refine_ls_shell.number_reflns_R_work 346 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1740 _refine_ls_shell.R_factor_R_free 0.2890 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 361 _refine_ls_shell.number_reflns_obs 361 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3T9Y _struct.title 'Crystal structure of GNAT family acetyltransferase Staphylococcus aureus subsp. aureus USA300_TCH1516' _struct.pdbx_descriptor 'Acetyltransferase, GNAT family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T9Y _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'PSI-BIOLOGY, Structural genomics, Midwest center for structural genomics, MCSG, acetyltransferase, transferase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details '(x,y,x) and (x,-y+1,-z)' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 12 ? GLU A 17 ? ASN A 9 GLU A 14 5 ? 6 HELX_P HELX_P2 2 LYS A 18 ? GLY A 30 ? LYS A 15 GLY A 27 1 ? 13 HELX_P HELX_P3 3 ASN A 34 ? ASN A 47 ? ASN A 31 ASN A 44 1 ? 14 HELX_P HELX_P4 4 SER A 90 ? ARG A 93 ? SER A 87 ARG A 90 5 ? 4 HELX_P HELX_P5 5 GLY A 96 ? LEU A 112 ? GLY A 93 LEU A 109 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A SER 5 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.341 ? covale2 covale ? ? A GLY 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLY 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A MSE 68 C ? ? ? 1_555 A CYS 69 N ? ? A MSE 65 A CYS 66 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A LYS 70 C ? ? ? 1_555 A MSE 71 N ? ? A LYS 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A MSE 71 C ? ? ? 1_555 A MSE 72 N ? ? A MSE 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A MSE 72 C ? ? ? 1_555 A PHE 73 N ? ? A MSE 69 A PHE 70 1_555 ? ? ? ? ? ? ? 1.339 ? covale7 covale ? ? A TYR 80 C ? ? ? 1_555 A MSE 81 N ? ? A TYR 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.336 ? covale8 covale ? ? A MSE 81 C ? ? ? 1_555 A ARG 82 N A ? A MSE 78 A ARG 79 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A MSE 81 C ? ? ? 1_555 A ARG 82 N B ? A MSE 78 A ARG 79 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MSE _struct_mon_prot_cis.label_seq_id 4 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MSE _struct_mon_prot_cis.auth_seq_id 1 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 5 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -10.80 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 6 ? LEU A 10 ? ILE A 3 LEU A 7 A 2 TYR A 51 ? LYS A 58 ? TYR A 48 LYS A 55 A 3 LYS A 61 ? MSE A 72 ? LYS A 58 MSE A 69 A 4 GLU A 79 ? ILE A 88 ? GLU A 76 ILE A 85 A 5 ILE A 117 ? LEU A 119 ? ILE A 114 LEU A 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 7 ? N ILE A 4 O ILE A 57 ? O ILE A 54 A 2 3 N LEU A 54 ? N LEU A 51 O SER A 66 ? O SER A 63 A 3 4 N GLY A 67 ? N GLY A 64 O LEU A 84 ? O LEU A 81 A 4 5 N ILE A 83 ? N ILE A 80 O THR A 118 ? O THR A 115 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 204' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PGE A 205' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 148' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS A 94 ? LYS A 91 . ? 1_555 ? 2 AC1 8 LYS A 95 ? LYS A 92 . ? 1_555 ? 3 AC1 8 GLY A 96 ? GLY A 93 . ? 1_555 ? 4 AC1 8 TYR A 97 ? TYR A 94 . ? 1_555 ? 5 AC1 8 GLY A 98 ? GLY A 95 . ? 1_555 ? 6 AC1 8 LYS A 99 ? LYS A 96 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 150 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 184 . ? 1_555 ? 9 AC2 6 LEU A 29 ? LEU A 26 . ? 1_555 ? 10 AC2 6 ALA A 85 ? ALA A 82 . ? 1_555 ? 11 AC2 6 PHE A 86 ? PHE A 83 . ? 1_555 ? 12 AC2 6 ASN A 120 ? ASN A 117 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH A 156 . ? 1_555 ? 14 AC2 6 HOH F . ? HOH A 207 . ? 1_555 ? 15 AC3 6 THR A 8 ? THR A 5 . ? 1_555 ? 16 AC3 6 LEU A 10 ? LEU A 7 . ? 3_655 ? 17 AC3 6 LEU A 54 ? LEU A 51 . ? 1_555 ? 18 AC3 6 ASP A 104 ? ASP A 101 . ? 1_555 ? 19 AC3 6 PHE A 108 ? PHE A 105 . ? 1_555 ? 20 AC3 6 ARG A 111 ? ARG A 108 . ? 1_555 ? 21 AC4 3 ARG A 41 ? ARG A 38 . ? 4_565 ? 22 AC4 3 ASN A 77 ? ASN A 74 . ? 1_555 ? 23 AC4 3 HOH F . ? HOH A 218 . ? 4_565 ? # _atom_sites.entry_id 3T9Y _atom_sites.fract_transf_matrix[1][1] 0.014345 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010900 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018565 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 ILE 6 3 3 ILE ILE A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 THR 8 5 5 THR THR A . n A 1 9 ARG 9 6 6 ARG ARG A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 PHE 11 8 8 PHE PHE A . n A 1 12 ASN 12 9 9 ASN ASN A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 SER 14 11 11 SER SER A . n A 1 15 ASP 15 12 12 ASP ASP A . n A 1 16 PHE 16 13 13 PHE PHE A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 LYS 18 15 15 LYS LYS A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 GLN 21 18 18 GLN GLN A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 CYS 23 20 20 CYS CYS A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 TYR 26 23 23 TYR TYR A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 ASP 28 25 25 ASP ASP A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 TYR 31 28 28 TYR TYR A . n A 1 32 PRO 32 29 29 PRO PRO A . n A 1 33 THR 33 30 30 THR THR A . n A 1 34 ASN 34 31 31 ASN ASN A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 ASN 36 33 33 ASN ASN A . n A 1 37 ASP 37 34 34 ASP ASP A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 LYS 39 36 36 LYS LYS A . n A 1 40 LYS 40 37 37 LYS LYS A . n A 1 41 ARG 41 38 38 ARG ARG A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 LYS 43 40 40 LYS LYS A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 ILE 45 42 42 ILE ILE A . n A 1 46 THR 46 43 43 THR THR A . n A 1 47 ASN 47 44 44 ASN ASN A . n A 1 48 HIS 48 45 45 HIS HIS A . n A 1 49 ASP 49 46 46 ASP ASP A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 TYR 51 48 48 TYR TYR A . n A 1 52 PHE 52 49 49 PHE PHE A . n A 1 53 LEU 53 50 50 LEU LEU A . n A 1 54 LEU 54 51 51 LEU LEU A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 ILE 57 54 54 ILE ILE A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 ASN 60 57 57 ASN ASN A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 ILE 62 59 59 ILE ILE A . n A 1 63 ILE 63 60 60 ILE ILE A . n A 1 64 GLY 64 61 61 GLY GLY A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 SER 66 63 63 SER SER A . n A 1 67 GLY 67 64 64 GLY GLY A . n A 1 68 MSE 68 65 65 MSE MSE A . n A 1 69 CYS 69 66 66 CYS CYS A . n A 1 70 LYS 70 67 67 LYS LYS A . n A 1 71 MSE 71 68 68 MSE MSE A . n A 1 72 MSE 72 69 69 MSE MSE A . n A 1 73 PHE 73 70 70 PHE PHE A . n A 1 74 TYR 74 71 71 TYR TYR A . n A 1 75 GLU 75 72 72 GLU GLU A . n A 1 76 LYS 76 73 73 LYS LYS A . n A 1 77 ASN 77 74 74 ASN ASN A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 GLU 79 76 76 GLU GLU A . n A 1 80 TYR 80 77 77 TYR TYR A . n A 1 81 MSE 81 78 78 MSE MSE A . n A 1 82 ARG 82 79 79 ARG ARG A . n A 1 83 ILE 83 80 80 ILE ILE A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 PHE 86 83 83 PHE PHE A . n A 1 87 VAL 87 84 84 VAL VAL A . n A 1 88 ILE 88 85 85 ILE ILE A . n A 1 89 HIS 89 86 86 HIS HIS A . n A 1 90 SER 90 87 87 SER SER A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 PHE 92 89 89 PHE PHE A . n A 1 93 ARG 93 90 90 ARG ARG A . n A 1 94 LYS 94 91 91 LYS LYS A . n A 1 95 LYS 95 92 92 LYS LYS A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 TYR 97 94 94 TYR TYR A . n A 1 98 GLY 98 95 95 GLY GLY A . n A 1 99 LYS 99 96 96 LYS LYS A . n A 1 100 ARG 100 97 97 ARG ARG A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 LEU 102 99 99 LEU LEU A . n A 1 103 ALA 103 100 100 ALA ALA A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 GLU 106 103 103 GLU GLU A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 PHE 108 105 105 PHE PHE A . n A 1 109 SER 109 106 106 SER SER A . n A 1 110 LYS 110 107 107 LYS LYS A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 ASN 113 110 110 ASN ASN A . n A 1 114 CYS 114 111 111 CYS CYS A . n A 1 115 LYS 115 112 112 LYS LYS A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 ILE 117 114 114 ILE ILE A . n A 1 118 THR 118 115 115 THR THR A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 ASN 120 117 117 ASN ASN A . n A 1 121 SER 121 118 118 SER SER A . n A 1 122 GLY 122 119 119 GLY GLY A . n A 1 123 ASN 123 120 120 ASN ASN A . n A 1 124 ARG 124 121 121 ARG ALA A . n A 1 125 ASN 125 122 ? ? ? A . n A 1 126 GLU 126 123 ? ? ? A . n A 1 127 ARG 127 124 ? ? ? A . n A 1 128 LEU 128 125 ? ? ? A . n A 1 129 SER 129 126 ? ? ? A . n A 1 130 ALA 130 127 ? ? ? A . n A 1 131 HIS 131 128 ? ? ? A . n A 1 132 LYS 132 129 ? ? ? A . n A 1 133 LEU 133 130 ? ? ? A . n A 1 134 TYR 134 131 ? ? ? A . n A 1 135 SER 135 132 ? ? ? A . n A 1 136 ASP 136 133 ? ? ? A . n A 1 137 ASN 137 134 134 ASN ASN A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 TYR 139 136 136 TYR TYR A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 SER 141 138 138 SER SER A . n A 1 142 ASN 142 139 139 ASN ASN A . n A 1 143 THR 143 140 140 THR THR A . n A 1 144 SER 144 141 141 SER SER A . n A 1 145 GLY 145 142 142 GLY GLY A . n A 1 146 PHE 146 143 143 PHE PHE A . n A 1 147 THR 147 144 144 THR THR A . n A 1 148 LYS 148 145 145 LYS LYS A . n A 1 149 GLN 149 146 146 GLN GLN A . n A 1 150 LEU 150 147 147 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 68 A MSE 65 ? MET SELENOMETHIONINE 3 A MSE 71 A MSE 68 ? MET SELENOMETHIONINE 4 A MSE 72 A MSE 69 ? MET SELENOMETHIONINE 5 A MSE 81 A MSE 78 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6570 ? 1 MORE -35 ? 1 'SSA (A^2)' 13970 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 91.7460000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 172 ? F HOH . 2 1 A HOH 228 ? F HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2011-08-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 30.1643 24.1942 7.4760 0.1615 0.1192 0.1377 -0.0021 -0.0021 0.0069 0.7674 0.1013 0.7185 0.1124 0.5413 0.2481 0.0274 -0.0042 -0.0232 -0.0325 -0.0445 -0.0021 0.0101 0.0424 -0.0239 'X-RAY DIFFRACTION' 2 ? refined 27.7689 27.7183 -4.4721 0.1570 0.1277 0.1327 0.0009 -0.0022 0.0008 0.1609 0.2661 0.3200 0.0935 0.1515 0.0215 -0.0004 0.0057 -0.0052 0.0210 0.0114 -0.0061 -0.0184 0.0188 0.0096 'X-RAY DIFFRACTION' 3 ? refined 29.5533 31.0968 7.8608 0.1526 0.1323 0.1363 0.0020 -0.0026 -0.0014 0.1538 0.4546 0.2259 0.1059 -0.0505 -0.0931 0.0140 -0.0090 -0.0051 -0.0015 -0.0156 -0.0007 0.0240 0.0123 0.0165 'X-RAY DIFFRACTION' 4 ? refined 25.0573 43.4460 5.5062 0.1553 0.1293 0.1312 -0.0009 0.0026 0.0015 0.0171 0.2963 0.0300 0.0088 0.0086 -0.0784 0.0026 -0.0116 0.0090 -0.0005 0.0005 0.0078 0.0140 -0.0059 -0.0088 'X-RAY DIFFRACTION' 5 ? refined 21.7171 39.9819 6.4210 0.1548 0.1291 0.1334 -0.0005 -0.0024 0.0022 0.0126 0.4491 0.1035 -0.0309 -0.0329 0.0564 -0.0065 0.0122 -0.0058 0.0101 0.0105 0.0154 -0.0115 -0.0035 -0.0028 'X-RAY DIFFRACTION' 6 ? refined 18.7101 31.4511 14.4660 0.1583 0.1301 0.1290 -0.0018 0.0006 0.0052 0.1409 0.3541 0.1695 0.1803 -0.0612 -0.0078 0.0086 -0.0020 -0.0066 -0.0114 0.0071 -0.0025 0.0149 0.0146 -0.0174 'X-RAY DIFFRACTION' 7 ? refined 22.8050 44.7290 10.9187 0.1480 0.1304 0.1279 0.0034 0.0146 0.0082 1.3988 1.2164 0.4497 -1.0590 0.1171 -0.1850 0.0182 -0.0084 -0.0098 0.0123 -0.0487 0.0682 0.0626 -0.0822 -0.0566 'X-RAY DIFFRACTION' 8 ? refined 8.8737 38.8036 5.5283 0.5537 1.3141 0.5564 0.0171 -0.3562 0.1570 0.2084 1.7930 0.1100 -0.5889 0.1461 -0.4437 0.0770 0.2334 -0.3103 -0.2228 -0.3215 0.9933 -0.5557 0.1436 -0.0830 'X-RAY DIFFRACTION' 9 ? refined 13.3087 46.2761 -2.9722 0.1631 0.1162 0.1379 -0.0245 -0.0037 0.0050 0.1437 0.1509 1.2157 -0.1378 0.0594 -0.1859 0.0396 0.0294 -0.0690 -0.0082 -0.0155 0.0220 -0.0107 -0.0367 -0.1100 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 22 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 23 A 43 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 44 A 58 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 59 A 72 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 73 A 87 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 88 A 107 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 108 A 118 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 119 A 135 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 136 A 147 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 4 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 HKL-3000 . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SHELXDE . ? ? ? ? phasing ? ? ? 10 RESOLVE . ? ? ? ? phasing ? ? ? 11 ARP/wARP . ? ? ? ? 'model building' ? ? ? 12 Coot . ? ? ? ? 'model building' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 30 ? ? -151.78 -157.65 2 1 ASN A 57 ? ? 73.48 -7.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 121 ? CG ? A ARG 124 CG 2 1 Y 1 A ARG 121 ? CD ? A ARG 124 CD 3 1 Y 1 A ARG 121 ? NE ? A ARG 124 NE 4 1 Y 1 A ARG 121 ? CZ ? A ARG 124 CZ 5 1 Y 1 A ARG 121 ? NH1 ? A ARG 124 NH1 6 1 Y 1 A ARG 121 ? NH2 ? A ARG 124 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A ASN 122 ? A ASN 125 5 1 Y 1 A GLU 123 ? A GLU 126 6 1 Y 1 A ARG 124 ? A ARG 127 7 1 Y 1 A LEU 125 ? A LEU 128 8 1 Y 1 A SER 126 ? A SER 129 9 1 Y 1 A ALA 127 ? A ALA 130 10 1 Y 1 A HIS 128 ? A HIS 131 11 1 Y 1 A LYS 129 ? A LYS 132 12 1 Y 1 A LEU 130 ? A LEU 133 13 1 Y 1 A TYR 131 ? A TYR 134 14 1 Y 1 A SER 132 ? A SER 135 15 1 Y 1 A ASP 133 ? A ASP 136 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 1,2-ETHANEDIOL EDO 4 'TRIETHYLENE GLYCOL' PGE 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 201 SO4 SO4 A . C 3 EDO 1 204 204 EDO EDO A . D 4 PGE 1 205 205 PGE PGE A . E 3 EDO 1 148 1 EDO EDO A . F 5 HOH 1 149 1 HOH HOH A . F 5 HOH 2 150 2 HOH HOH A . F 5 HOH 3 151 3 HOH HOH A . F 5 HOH 4 152 4 HOH HOH A . F 5 HOH 5 153 5 HOH HOH A . F 5 HOH 6 154 6 HOH HOH A . F 5 HOH 7 155 7 HOH HOH A . F 5 HOH 8 156 8 HOH HOH A . F 5 HOH 9 157 9 HOH HOH A . F 5 HOH 10 158 10 HOH HOH A . F 5 HOH 11 159 11 HOH HOH A . F 5 HOH 12 160 12 HOH HOH A . F 5 HOH 13 161 13 HOH HOH A . F 5 HOH 14 162 14 HOH HOH A . F 5 HOH 15 163 15 HOH HOH A . F 5 HOH 16 164 16 HOH HOH A . F 5 HOH 17 165 17 HOH HOH A . F 5 HOH 18 166 18 HOH HOH A . F 5 HOH 19 167 19 HOH HOH A . F 5 HOH 20 168 20 HOH HOH A . F 5 HOH 21 169 21 HOH HOH A . F 5 HOH 22 170 22 HOH HOH A . F 5 HOH 23 171 23 HOH HOH A . F 5 HOH 24 172 24 HOH HOH A . F 5 HOH 25 173 25 HOH HOH A . F 5 HOH 26 174 26 HOH HOH A . F 5 HOH 27 175 27 HOH HOH A . F 5 HOH 28 176 28 HOH HOH A . F 5 HOH 29 177 29 HOH HOH A . F 5 HOH 30 178 30 HOH HOH A . F 5 HOH 31 179 31 HOH HOH A . F 5 HOH 32 180 32 HOH HOH A . F 5 HOH 33 181 33 HOH HOH A . F 5 HOH 34 182 34 HOH HOH A . F 5 HOH 35 183 35 HOH HOH A . F 5 HOH 36 184 36 HOH HOH A . F 5 HOH 37 185 37 HOH HOH A . F 5 HOH 38 186 38 HOH HOH A . F 5 HOH 39 187 39 HOH HOH A . F 5 HOH 40 188 40 HOH HOH A . F 5 HOH 41 189 41 HOH HOH A . F 5 HOH 42 190 42 HOH HOH A . F 5 HOH 43 191 43 HOH HOH A . F 5 HOH 44 192 44 HOH HOH A . F 5 HOH 45 193 45 HOH HOH A . F 5 HOH 46 194 46 HOH HOH A . F 5 HOH 47 195 47 HOH HOH A . F 5 HOH 48 196 48 HOH HOH A . F 5 HOH 49 197 49 HOH HOH A . F 5 HOH 50 198 50 HOH HOH A . F 5 HOH 51 199 51 HOH HOH A . F 5 HOH 52 200 52 HOH HOH A . F 5 HOH 53 202 53 HOH HOH A . F 5 HOH 54 203 54 HOH HOH A . F 5 HOH 55 206 55 HOH HOH A . F 5 HOH 56 207 56 HOH HOH A . F 5 HOH 57 208 57 HOH HOH A . F 5 HOH 58 209 58 HOH HOH A . F 5 HOH 59 210 59 HOH HOH A . F 5 HOH 60 211 60 HOH HOH A . F 5 HOH 61 212 61 HOH HOH A . F 5 HOH 62 213 62 HOH HOH A . F 5 HOH 63 214 63 HOH HOH A . F 5 HOH 64 215 64 HOH HOH A . F 5 HOH 65 216 65 HOH HOH A . F 5 HOH 66 217 66 HOH HOH A . F 5 HOH 67 218 67 HOH HOH A . F 5 HOH 68 219 68 HOH HOH A . F 5 HOH 69 220 69 HOH HOH A . F 5 HOH 70 221 70 HOH HOH A . F 5 HOH 71 222 71 HOH HOH A . F 5 HOH 72 223 72 HOH HOH A . F 5 HOH 73 224 73 HOH HOH A . F 5 HOH 74 225 74 HOH HOH A . F 5 HOH 75 226 75 HOH HOH A . F 5 HOH 76 227 76 HOH HOH A . F 5 HOH 77 228 77 HOH HOH A . F 5 HOH 78 229 78 HOH HOH A . F 5 HOH 79 230 79 HOH HOH A . F 5 HOH 80 231 80 HOH HOH A . F 5 HOH 81 232 81 HOH HOH A . F 5 HOH 82 233 82 HOH HOH A . F 5 HOH 83 234 83 HOH HOH A . F 5 HOH 84 235 84 HOH HOH A . F 5 HOH 85 236 85 HOH HOH A . F 5 HOH 86 237 86 HOH HOH A . F 5 HOH 87 238 87 HOH HOH A . F 5 HOH 88 239 88 HOH HOH A . #