HEADER SIGNALING PROTEIN 03-AUG-11 3TA2 TITLE A. FULGIDUS GLNK3, MGATP/2-OG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II (GLNB-3); COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 12-120; COMPND 5 SYNONYM: GLNK3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: AF_1750, GLNK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET KEYWDS PII-FAMILY, REGULATOR, AMT3, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MAIER,P.SCHLEBERGER,W.LUE,T.WACKER,T.PFLUEGER,C.LITZ,S.L.A.ANDRADE REVDAT 3 13-SEP-23 3TA2 1 REMARK SEQADV LINK REVDAT 2 28-MAR-12 3TA2 1 JRNL REVDAT 1 26-OCT-11 3TA2 0 JRNL AUTH S.MAIER,P.SCHLEBERGER,W.LU,T.WACKER,T.PFLUGER,C.LITZ, JRNL AUTH 2 S.L.ANDRADE JRNL TITL MECHANISM OF DISRUPTION OF THE AMT-GLNK COMPLEX BY JRNL TITL 2 P(II)-MEDIATED SENSING OF 2-OXOGLUTARATE. JRNL REF PLOS ONE V. 6 26327 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22039461 JRNL DOI 10.1371/JOURNAL.PONE.0026327 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 32019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2964 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1939 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2821 REMARK 3 BIN R VALUE (WORKING SET) : 0.1921 REMARK 3 BIN FREE R VALUE : 0.2295 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.82 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28950 REMARK 3 B22 (A**2) : 0.28950 REMARK 3 B33 (A**2) : -0.57900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.176 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.125 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.125 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.117 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2734 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3685 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1087 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 86 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 387 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2734 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 347 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3325 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.40 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX VHF MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33612 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3O8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.2 M SODIUM CHLORIDE, 0.1 M REMARK 280 SODIUM ACETATE BUFFER, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.57000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.57000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.57000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 111.57000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 111.57000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 111.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -39.61000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 68.60653 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -79.22000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 39.61000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 68.60653 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -39.61000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 68.60653 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 274 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 110 REMARK 465 ALA A 111 REMARK 465 ALA A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 ALA B 110 REMARK 465 ALA B 111 REMARK 465 ALA B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 ALA C 110 REMARK 465 ALA C 111 REMARK 465 ALA C 112 REMARK 465 HIS C 113 REMARK 465 HIS C 114 REMARK 465 HIS C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 14 O HOH A 325 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 119 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 39 OE1 REMARK 620 2 AKG A 120 O2 80.3 REMARK 620 3 AKG A 120 O5 83.0 74.0 REMARK 620 4 ATP A 121 O2B 99.5 98.7 171.8 REMARK 620 5 ATP A 121 O2G 96.1 170.4 96.8 90.7 REMARK 620 6 ATP A 121 O1A 168.4 91.6 86.7 89.9 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 122 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 15 SG REMARK 620 2 GLU C 75 OE2 109.6 REMARK 620 3 GLU C 75 OE1 85.2 54.0 REMARK 620 4 HOH C 315 O 113.9 128.4 103.4 REMARK 620 5 HOH C 316 O 117.5 93.0 146.0 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 119 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 39 OE1 REMARK 620 2 AKG B 120 O2 84.1 REMARK 620 3 AKG B 120 O5 81.8 78.6 REMARK 620 4 ATP B 121 O1B 100.0 96.9 175.0 REMARK 620 5 ATP B 121 O2G 94.8 172.3 93.7 90.8 REMARK 620 6 ATP B 121 O1A 164.9 86.1 85.1 92.5 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 122 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 15 SG REMARK 620 2 HOH C 356 O 115.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 119 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 39 OE1 REMARK 620 2 AKG C 120 O2 83.6 REMARK 620 3 AKG C 120 O5 84.6 78.5 REMARK 620 4 ATP C 121 O1B 98.6 95.3 172.8 REMARK 620 5 ATP C 121 O1G 91.2 174.0 97.9 88.5 REMARK 620 6 ATP C 121 O2A 167.5 85.6 87.2 88.6 99.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG C 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T9Z RELATED DB: PDB REMARK 900 A. FULGIDUS GLNK3, LIGAND-FREE REMARK 900 RELATED ID: 3TA0 RELATED DB: PDB REMARK 900 A. FULGIDUS GLNK3, MGATP COMPLEX REMARK 900 RELATED ID: 3TA1 RELATED DB: PDB REMARK 900 A. FULGIDUS GLNK3, MGADP COMPLEX DBREF 3TA2 A 1 109 UNP O28524 O28524_ARCFU 12 120 DBREF 3TA2 B 1 109 UNP O28524 O28524_ARCFU 12 120 DBREF 3TA2 C 1 109 UNP O28524 O28524_ARCFU 12 120 SEQADV 3TA2 ALA A 110 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA A 111 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA A 112 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS A 113 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS A 114 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS A 115 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS A 116 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS A 117 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS A 118 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA B 110 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA B 111 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA B 112 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS B 113 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS B 114 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS B 115 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS B 116 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS B 117 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS B 118 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA C 110 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA C 111 UNP O28524 EXPRESSION TAG SEQADV 3TA2 ALA C 112 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS C 113 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS C 114 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS C 115 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS C 116 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS C 117 UNP O28524 EXPRESSION TAG SEQADV 3TA2 HIS C 118 UNP O28524 EXPRESSION TAG SEQRES 1 A 118 MET LYS MET VAL VAL ALA VAL ILE ARG PRO GLU LYS LEU SEQRES 2 A 118 GLU CYS VAL LYS LYS ALA LEU GLU GLU ARG GLY PHE VAL SEQRES 3 A 118 GLY MET THR VAL THR GLU VAL LYS GLY ARG GLY GLU GLN SEQRES 4 A 118 LYS GLY ILE ARG LEU GLN PHE ARG GLY ARG GLU VAL GLU SEQRES 5 A 118 VAL ASP LEU LEU GLN LYS THR LYS VAL GLU VAL VAL VAL SEQRES 6 A 118 SER ASP ASP ALA VAL ASP GLU VAL VAL GLU ALA ILE VAL SEQRES 7 A 118 SER SER ALA ARG THR GLY LYS PHE GLY ASP GLY ARG ILE SEQRES 8 A 118 PHE VAL ILE PRO VAL GLU LYS SER VAL LYS ILE ARG THR SEQRES 9 A 118 GLY ASP GLU GLU VAL ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 10 A 118 HIS SEQRES 1 B 118 MET LYS MET VAL VAL ALA VAL ILE ARG PRO GLU LYS LEU SEQRES 2 B 118 GLU CYS VAL LYS LYS ALA LEU GLU GLU ARG GLY PHE VAL SEQRES 3 B 118 GLY MET THR VAL THR GLU VAL LYS GLY ARG GLY GLU GLN SEQRES 4 B 118 LYS GLY ILE ARG LEU GLN PHE ARG GLY ARG GLU VAL GLU SEQRES 5 B 118 VAL ASP LEU LEU GLN LYS THR LYS VAL GLU VAL VAL VAL SEQRES 6 B 118 SER ASP ASP ALA VAL ASP GLU VAL VAL GLU ALA ILE VAL SEQRES 7 B 118 SER SER ALA ARG THR GLY LYS PHE GLY ASP GLY ARG ILE SEQRES 8 B 118 PHE VAL ILE PRO VAL GLU LYS SER VAL LYS ILE ARG THR SEQRES 9 B 118 GLY ASP GLU GLU VAL ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 10 B 118 HIS SEQRES 1 C 118 MET LYS MET VAL VAL ALA VAL ILE ARG PRO GLU LYS LEU SEQRES 2 C 118 GLU CYS VAL LYS LYS ALA LEU GLU GLU ARG GLY PHE VAL SEQRES 3 C 118 GLY MET THR VAL THR GLU VAL LYS GLY ARG GLY GLU GLN SEQRES 4 C 118 LYS GLY ILE ARG LEU GLN PHE ARG GLY ARG GLU VAL GLU SEQRES 5 C 118 VAL ASP LEU LEU GLN LYS THR LYS VAL GLU VAL VAL VAL SEQRES 6 C 118 SER ASP ASP ALA VAL ASP GLU VAL VAL GLU ALA ILE VAL SEQRES 7 C 118 SER SER ALA ARG THR GLY LYS PHE GLY ASP GLY ARG ILE SEQRES 8 C 118 PHE VAL ILE PRO VAL GLU LYS SER VAL LYS ILE ARG THR SEQRES 9 C 118 GLY ASP GLU GLU VAL ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 10 C 118 HIS HET MG A 119 1 HET AKG A 120 10 HET ATP A 121 31 HET MG B 119 1 HET AKG B 120 10 HET ATP B 121 31 HET NI B 122 1 HET MG C 119 1 HET AKG C 120 10 HET ATP C 121 31 HET NI C 122 1 HETNAM MG MAGNESIUM ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM NI NICKEL (II) ION FORMUL 4 MG 3(MG 2+) FORMUL 5 AKG 3(C5 H6 O5) FORMUL 6 ATP 3(C10 H16 N5 O13 P3) FORMUL 10 NI 2(NI 2+) FORMUL 15 HOH *345(H2 O) HELIX 1 1 LYS A 12 ARG A 23 1 12 HELIX 2 2 SER A 66 ASP A 68 5 3 HELIX 3 3 ALA A 69 ARG A 82 1 14 HELIX 4 4 LYS B 12 ARG B 23 1 12 HELIX 5 5 SER B 66 ASP B 68 5 3 HELIX 6 6 ALA B 69 ARG B 82 1 14 HELIX 7 7 LYS C 12 ARG C 23 1 12 HELIX 8 8 SER C 66 ASP C 68 5 3 HELIX 9 9 ALA C 69 ARG C 82 1 14 SHEET 1 A 4 THR A 29 GLY A 35 0 SHEET 2 A 4 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 3 A 4 LYS A 2 ILE A 8 -1 N ALA A 6 O VAL A 61 SHEET 4 A 4 GLY A 89 PRO A 95 -1 O ILE A 94 N MET A 3 SHEET 1 B 2 ILE A 42 PHE A 46 0 SHEET 2 B 2 ARG A 49 VAL A 53 -1 O VAL A 51 N LEU A 44 SHEET 1 C 2 SER A 99 VAL A 100 0 SHEET 2 C 2 GLU A 107 GLU A 108 -1 O GLU A 108 N SER A 99 SHEET 1 D 4 THR B 29 GLY B 35 0 SHEET 2 D 4 LEU B 56 VAL B 65 -1 O LYS B 60 N THR B 31 SHEET 3 D 4 LYS B 2 ILE B 8 -1 N ALA B 6 O VAL B 61 SHEET 4 D 4 GLY B 89 PRO B 95 -1 O ILE B 94 N MET B 3 SHEET 1 E 2 ILE B 42 PHE B 46 0 SHEET 2 E 2 ARG B 49 VAL B 53 -1 O ARG B 49 N PHE B 46 SHEET 1 F 2 SER B 99 VAL B 100 0 SHEET 2 F 2 GLU B 107 GLU B 108 -1 O GLU B 108 N SER B 99 SHEET 1 G 4 THR C 29 GLY C 35 0 SHEET 2 G 4 LEU C 56 VAL C 65 -1 O LEU C 56 N GLY C 35 SHEET 3 G 4 LYS C 2 ILE C 8 -1 N ALA C 6 O VAL C 61 SHEET 4 G 4 GLY C 89 PRO C 95 -1 O ILE C 94 N MET C 3 SHEET 1 H 2 ILE C 42 PHE C 46 0 SHEET 2 H 2 ARG C 49 VAL C 53 -1 O VAL C 51 N LEU C 44 SHEET 1 I 2 SER C 99 VAL C 100 0 SHEET 2 I 2 GLU C 107 GLU C 108 -1 O GLU C 108 N SER C 99 LINK OE1 GLN A 39 MG MG A 119 1555 1555 2.09 LINK MG MG A 119 O2 AKG A 120 1555 1555 2.10 LINK MG MG A 119 O5 AKG A 120 1555 1555 2.22 LINK MG MG A 119 O2B ATP A 121 1555 1555 2.00 LINK MG MG A 119 O2G ATP A 121 1555 1555 2.00 LINK MG MG A 119 O1A ATP A 121 1555 1555 2.07 LINK SG CYS B 15 NI NI B 122 1555 1555 2.25 LINK OE1 GLN B 39 MG MG B 119 1555 1555 2.09 LINK MG MG B 119 O2 AKG B 120 1555 1555 2.08 LINK MG MG B 119 O5 AKG B 120 1555 1555 2.23 LINK MG MG B 119 O1B ATP B 121 1555 1555 2.01 LINK MG MG B 119 O2G ATP B 121 1555 1555 2.07 LINK MG MG B 119 O1A ATP B 121 1555 1555 2.10 LINK NI NI B 122 OE2 GLU C 75 1555 1555 2.14 LINK NI NI B 122 OE1 GLU C 75 1555 1555 2.63 LINK NI NI B 122 O HOH C 315 1555 1555 2.36 LINK NI NI B 122 O HOH C 316 1555 1555 2.28 LINK SG CYS C 15 NI NI C 122 1555 1555 2.61 LINK OE1 GLN C 39 MG MG C 119 1555 1555 2.00 LINK MG MG C 119 O2 AKG C 120 1555 1555 2.00 LINK MG MG C 119 O5 AKG C 120 1555 1555 2.18 LINK MG MG C 119 O1B ATP C 121 1555 1555 2.02 LINK MG MG C 119 O1G ATP C 121 1555 1555 2.02 LINK MG MG C 119 O2A ATP C 121 1555 1555 2.18 LINK NI NI C 122 O HOH C 356 1555 1555 2.45 SITE 1 AC1 3 GLN A 39 AKG A 120 ATP A 121 SITE 1 AC2 15 ARG A 9 ARG A 36 GLY A 37 GLU A 38 SITE 2 AC2 15 GLN A 39 LYS A 40 GLY A 41 ILE A 42 SITE 3 AC2 15 LYS A 58 PHE A 86 GLY A 87 MG A 119 SITE 4 AC2 15 ATP A 121 HOH A 150 HOH A 158 SITE 1 AC3 25 VAL A 7 GLY A 27 MET A 28 THR A 29 SITE 2 AC3 25 GLY A 35 ARG A 36 GLY A 37 GLU A 38 SITE 3 AC3 25 GLN A 39 LYS A 58 GLU A 62 VAL A 64 SITE 4 AC3 25 PHE A 86 GLY A 87 ASP A 88 GLY A 89 SITE 5 AC3 25 ARG A 90 LYS A 101 ARG A 103 MG A 119 SITE 6 AC3 25 AKG A 120 HOH A 129 HOH A 150 HOH A 151 SITE 7 AC3 25 HOH A 327 SITE 1 AC4 3 GLN B 39 AKG B 120 ATP B 121 SITE 1 AC5 15 ARG B 9 ARG B 36 GLY B 37 GLU B 38 SITE 2 AC5 15 GLN B 39 LYS B 40 GLY B 41 ILE B 42 SITE 3 AC5 15 LYS B 58 PHE B 86 GLY B 87 MG B 119 SITE 4 AC5 15 ATP B 121 HOH B 123 HOH B 334 SITE 1 AC6 26 VAL B 7 GLY B 27 MET B 28 THR B 29 SITE 2 AC6 26 GLY B 35 ARG B 36 GLY B 37 GLU B 38 SITE 3 AC6 26 GLN B 39 LYS B 58 GLU B 62 VAL B 64 SITE 4 AC6 26 PHE B 86 GLY B 87 ASP B 88 GLY B 89 SITE 5 AC6 26 ARG B 90 LYS B 101 ARG B 103 MG B 119 SITE 6 AC6 26 AKG B 120 HOH B 123 HOH B 142 HOH B 146 SITE 7 AC6 26 HOH B 176 HOH B 287 SITE 1 AC7 4 CYS B 15 GLU C 75 HOH C 315 HOH C 316 SITE 1 AC8 3 GLN C 39 AKG C 120 ATP C 121 SITE 1 AC9 14 ARG C 9 ARG C 36 GLY C 37 GLU C 38 SITE 2 AC9 14 GLN C 39 LYS C 40 GLY C 41 LYS C 58 SITE 3 AC9 14 PHE C 86 GLY C 87 MG C 119 ATP C 121 SITE 4 AC9 14 HOH C 127 HOH C 131 SITE 1 BC1 24 VAL C 7 GLY C 27 MET C 28 THR C 29 SITE 2 BC1 24 GLY C 35 ARG C 36 GLY C 37 GLU C 38 SITE 3 BC1 24 GLN C 39 LYS C 58 GLU C 62 VAL C 64 SITE 4 BC1 24 PHE C 86 GLY C 87 ASP C 88 GLY C 89 SITE 5 BC1 24 ARG C 90 LYS C 101 ARG C 103 MG C 119 SITE 6 BC1 24 AKG C 120 HOH C 131 HOH C 157 HOH C 159 SITE 1 BC2 2 CYS C 15 HOH C 356 CRYST1 79.220 79.220 223.140 90.00 90.00 120.00 P 63 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012623 0.007288 0.000000 0.00000 SCALE2 0.000000 0.014576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004481 0.00000