HEADER TRANSFERASE/DNA 04-AUG-11 3TAQ TITLE CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO TITLE 2 DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-4) POSITION CAVEAT 3TAQ GLC D 1 HAS WRONG CHIRALITY AT ATOM C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BACILLUS FRAGMENT (UNP RESIDUES 285-876); COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*C*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*G)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER STRAND; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS; SOURCE 3 ORGANISM_TAXID: 129337; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS DNA POLYMERASE I, PROTEIN-DNA COMPLEX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.S.BEESE REVDAT 5 13-SEP-23 3TAQ 1 HETSYN REVDAT 4 29-JUL-20 3TAQ 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 02-APR-14 3TAQ 1 SOURCE REVDAT 2 16-NOV-11 3TAQ 1 JRNL REVDAT 1 19-OCT-11 3TAQ 0 JRNL AUTH W.WANG,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF JRNL TITL 2 SPONTANEOUS MUTAGENESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22006298 JRNL DOI 10.1073/PNAS.1114496108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.JOHNSON,L.S.BEESE REMARK 1 TITL STRUCTURES OF MISMATCH REPLICATION ERRORS OBSERVED IN A DNA REMARK 1 TITL 2 POLYMERASE. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 116 803 2004 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 15035983 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 95402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 4596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7963 - 5.1237 0.89 3156 181 0.1976 0.2158 REMARK 3 2 5.1237 - 4.0680 0.92 3138 153 0.1466 0.1474 REMARK 3 3 4.0680 - 3.5541 0.93 3158 155 0.1470 0.1512 REMARK 3 4 3.5541 - 3.2293 0.94 3119 179 0.1561 0.1915 REMARK 3 5 3.2293 - 2.9979 0.95 3194 145 0.1740 0.2005 REMARK 3 6 2.9979 - 2.8212 0.95 3157 151 0.1672 0.1830 REMARK 3 7 2.8212 - 2.6800 0.94 3124 183 0.1638 0.1933 REMARK 3 8 2.6800 - 2.5633 0.95 3158 147 0.1607 0.1777 REMARK 3 9 2.5633 - 2.4646 0.95 3128 176 0.1558 0.1946 REMARK 3 10 2.4646 - 2.3796 0.95 3176 166 0.1508 0.1836 REMARK 3 11 2.3796 - 2.3052 0.95 3113 168 0.1527 0.1795 REMARK 3 12 2.3052 - 2.2393 0.95 3121 170 0.1456 0.1797 REMARK 3 13 2.2393 - 2.1804 0.94 3093 170 0.1519 0.1671 REMARK 3 14 2.1804 - 2.1272 0.95 3100 166 0.1528 0.1948 REMARK 3 15 2.1272 - 2.0788 0.95 3112 167 0.1557 0.1733 REMARK 3 16 2.0788 - 2.0346 0.94 3156 122 0.1616 0.1557 REMARK 3 17 2.0346 - 1.9939 0.94 3114 135 0.1655 0.1669 REMARK 3 18 1.9939 - 1.9563 0.92 3070 120 0.1675 0.1707 REMARK 3 19 1.9563 - 1.9213 0.92 3090 93 0.1649 0.2431 REMARK 3 20 1.9213 - 1.8888 0.91 2965 157 0.1752 0.1997 REMARK 3 21 1.8888 - 1.8583 0.90 2967 156 0.1843 0.2438 REMARK 3 22 1.8583 - 1.8297 0.90 2918 153 0.1897 0.2363 REMARK 3 23 1.8297 - 1.8028 0.89 2892 152 0.1938 0.2313 REMARK 3 24 1.8028 - 1.7774 0.88 2897 153 0.1938 0.2466 REMARK 3 25 1.7774 - 1.7534 0.87 2843 150 0.2020 0.2462 REMARK 3 26 1.7534 - 1.7306 0.87 2816 148 0.2055 0.2517 REMARK 3 27 1.7306 - 1.7090 0.85 2786 146 0.2098 0.2239 REMARK 3 28 1.7090 - 1.6884 0.85 2799 148 0.2198 0.2101 REMARK 3 29 1.6884 - 1.6688 0.83 2699 142 0.2296 0.2641 REMARK 3 30 1.6688 - 1.6500 0.83 2747 144 0.2501 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.45 REMARK 3 B_SOL : 48.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.48330 REMARK 3 B22 (A**2) : -1.77080 REMARK 3 B33 (A**2) : -4.71250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5354 REMARK 3 ANGLE : 1.243 7350 REMARK 3 CHIRALITY : 0.120 834 REMARK 3 PLANARITY : 0.006 859 REMARK 3 DIHEDRAL : 15.808 2044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97121 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1L5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45-50% SATURATED AMMONIUM SULFATE, REMARK 280 2.5% MPD, 10 MM MAGNESIUM SULFATE, 100 MM MES, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 DG B 17 REMARK 465 DC B 18 REMARK 465 DG C 2 REMARK 465 DC C 16 REMARK 465 DA C 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 DG B 19 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ALA A 297 O HOH A 1098 3545 2.01 REMARK 500 O HOH A 1282 O HOH A 1289 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 29 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 5 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DC C 8 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 60.81 61.42 REMARK 500 ASP A 402 97.45 -161.33 REMARK 500 ASP A 408 13.33 -140.27 REMARK 500 ALA A 421 39.94 -88.84 REMARK 500 GLN A 524 138.41 -172.20 REMARK 500 LEU A 610 -53.94 -123.82 REMARK 500 ILE A 628 -25.99 -152.10 REMARK 500 HIS A 768 24.01 81.56 REMARK 500 HIS A 829 -56.25 74.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 118 O REMARK 620 2 ASP A 653 OD1 99.2 REMARK 620 3 TYR A 654 O 123.1 75.3 REMARK 620 4 ASP A 830 OD2 65.1 129.3 75.5 REMARK 620 5 HOH A1108 O 145.5 114.1 75.9 97.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TAN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-1) POSITION REMARK 900 RELATED ID: 3TAP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-3) POSITION REMARK 900 RELATED ID: 3TAR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-6) POSITION REMARK 900 RELATED ID: 3THV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DNA AND DDATP-DT IN CLOSED CONFORMATION REMARK 900 RELATED ID: 3TI0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DNA AND DDGTP-DC IN CLOSED CONFORMATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE GEOBACILLUS SP. STRAIN IS UNKNOWN BUT REMARK 999 SIMILAR TO Y412MC61. DBREF 3TAQ A 285 876 UNP C9RTX7 C9RTX7_GEOSY 285 876 DBREF 3TAQ B 17 29 PDB 3TAQ 3TAQ 17 29 DBREF 3TAQ C 2 17 PDB 3TAQ 3TAQ 2 17 SEQADV 3TAQ GLU A 456 UNP C9RTX7 ALA 456 SEE REMARK 999 SEQADV 3TAQ LYS A 505 UNP C9RTX7 GLU 505 SEE REMARK 999 SEQADV 3TAQ HIS A 823 UNP C9RTX7 ARG 823 SEE REMARK 999 SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 13 DG DC DG DA DT DC DA DC DG DC DA DC DG SEQRES 1 C 16 DG DA DC DG DT DA DC DG DT DG DA DT DC SEQRES 2 C 16 DG DC DA HET GLC D 1 22 HET FRU D 2 23 HET GLC E 1 22 HET FRU E 2 23 HET MG A 1 1 HET SO4 A 2 5 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 877 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 4 GLC 2(C6 H12 O6) FORMUL 4 FRU 2(C6 H12 O6) FORMUL 6 MG MG 2+ FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 HOH *775(H2 O) HELIX 1 1 THR A 308 ALA A 313 5 6 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 PRO A 566 HIS A 568 5 3 HELIX 17 17 GLU A 569 TYR A 587 1 19 HELIX 18 18 TYR A 587 VAL A 595 1 9 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 GLN A 691 1 12 HELIX 24 24 SER A 693 VAL A 697 5 5 HELIX 25 25 THR A 698 GLY A 715 1 18 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 GLN A 854 1 15 SHEET 1 A 6 THR A 302 ALA A 304 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O PHE A 345 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N ILE A 335 O LEU A 346 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 LYS A 549 THR A 550 0 SHEET 2 C 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 D 2 ILE A 605 ASN A 607 0 SHEET 2 D 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 E 4 HIS A 823 GLN A 827 0 SHEET 2 E 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 E 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 E 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 F 2 TYR A 762 THR A 764 0 SHEET 2 F 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.40 LINK C1 GLC E 1 O2 FRU E 2 1555 1555 1.39 LINK MG MG A 1 O HOH A 118 1555 1555 3.36 LINK MG MG A 1 OD1 ASP A 653 1555 1555 2.79 LINK MG MG A 1 O TYR A 654 1555 1555 2.84 LINK MG MG A 1 OD2 ASP A 830 1555 1555 3.04 LINK MG MG A 1 O HOH A1108 1555 1555 2.91 CISPEP 1 GLU A 620 PRO A 621 0 1.15 CRYST1 86.580 93.600 106.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009403 0.00000