HEADER TRANSCRIPTION 06-AUG-11 3TBI TITLE CRYSTAL STRUCTURE OF T4 GP33 BOUND TO E. COLI RNAP BETA-FLAP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE-ASSOCIATED PROTEIN GP33; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP33 LATE PROMOTER TRANSCRIPTION ACCESSORY PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: BETA-FLAP DOMAIN (UNP RESIDUES 831-1057); COMPND 10 SYNONYM: RNAP SUBUNIT BETA, RNA POLYMERASE SUBUNIT BETA, COMPND 11 TRANSCRIPTASE SUBUNIT BETA; COMPND 12 EC: 2.7.7.6; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: 33, GP33; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: B3987, GRON, JW3950, NITB, RIF, RON, RPOB, STL, STV, TABD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSCRIPTION ACCESSORY PROTEIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.A.F.TWIST,E.A.CAMPBELL,S.A.DARST REVDAT 1 23-NOV-11 3TBI 0 JRNL AUTH K.A.F.TWIST,E.A.CAMPBELL,S.A.DARST,E.P.GEIDUSCHEK, JRNL AUTH 2 A.HOCHSCHILD,P.DEIGHAN JRNL TITL CRYSTAL STRUCTURE OF T4 GP33 BOUND TO E. COLI RNAP BETA-FLAP JRNL TITL 2 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0107 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 10051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3990 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 112.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47000 REMARK 3 B22 (A**2) : 5.16000 REMARK 3 B33 (A**2) : -2.69000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.363 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.434 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.371 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2353 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3167 ; 0.656 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 3.965 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;30.208 ;25.849 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;15.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1719 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 409 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1482 ; 0.322 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 607 ; 0.033 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2387 ; 0.607 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 868 ; 0.689 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 777 ; 1.211 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 830 B 941 REMARK 3 RESIDUE RANGE : B 1041 B 1057 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0550 19.5640 16.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: 0.0857 REMARK 3 T33: 0.1215 T12: -0.0298 REMARK 3 T13: 0.0289 T23: -0.0883 REMARK 3 L TENSOR REMARK 3 L11: 1.4599 L22: 2.7617 REMARK 3 L33: 10.1131 L12: 1.6532 REMARK 3 L13: 0.9478 L23: 2.8629 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.0273 S13: 0.1063 REMARK 3 S21: -0.0938 S22: 0.1052 S23: 0.0345 REMARK 3 S31: -0.0450 S32: -0.0238 S33: -0.1884 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 942 B 1040 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4390 17.7050 46.0180 REMARK 3 T TENSOR REMARK 3 T11: 0.4190 T22: 0.3697 REMARK 3 T33: 0.6565 T12: 0.1493 REMARK 3 T13: -0.1969 T23: -0.3000 REMARK 3 L TENSOR REMARK 3 L11: 9.8472 L22: 0.7999 REMARK 3 L33: 10.3491 L12: 1.1699 REMARK 3 L13: 8.2271 L23: -0.1124 REMARK 3 S TENSOR REMARK 3 S11: 0.2513 S12: 0.5964 S13: -0.4571 REMARK 3 S21: 0.1171 S22: -0.0911 S23: -0.4109 REMARK 3 S31: 0.8579 S32: 1.1083 S33: -0.1602 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7860 12.9650 -13.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.5010 T22: 0.4668 REMARK 3 T33: 0.3091 T12: -0.0790 REMARK 3 T13: -0.0662 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 3.5823 L22: 10.1422 REMARK 3 L33: 10.4924 L12: 3.6219 REMARK 3 L13: 4.2709 L23: 4.8032 REMARK 3 S TENSOR REMARK 3 S11: -0.8222 S12: 0.8848 S13: 0.5347 REMARK 3 S21: -1.8252 S22: 0.5857 S23: 0.8298 REMARK 3 S31: -1.9675 S32: 0.4924 S33: 0.2364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3TBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB067276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10551 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.995 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIETHYLAMINE N-OXIDE, 20% REMARK 280 PEG2000 MME, 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.60900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.12500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.42350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.60900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.12500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.42350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.60900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.12500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.42350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.60900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.12500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.42350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 ARG A 10 REMARK 465 PRO A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 GLU A 19 REMARK 465 LYS A 20 REMARK 465 GLU A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 ILE A 24 REMARK 465 LYS A 25 REMARK 465 LYS A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 ASP A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 GLU A 103 REMARK 465 LYS A 104 REMARK 465 THR A 105 REMARK 465 ASN A 106 REMARK 465 THR A 107 REMARK 465 LEU A 108 REMARK 465 ASP A 109 REMARK 465 PHE A 110 REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 954 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 915 NH2 ARG B 919 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 67 OG SER A 67 2455 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 954 CG LYS B 954 CD -0.212 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 35 -68.60 -19.12 REMARK 500 ASP A 36 95.57 -34.40 REMARK 500 GLU A 50 -65.20 -99.00 REMARK 500 TYR A 55 -39.53 -36.67 REMARK 500 LEU A 56 -70.15 -65.17 REMARK 500 ALA A 58 -73.69 -48.93 REMARK 500 GLU B 867 -18.87 -48.93 REMARK 500 GLU B 892 -79.11 -27.75 REMARK 500 THR B 893 -39.38 -21.17 REMARK 500 LYS B 909 34.91 -88.80 REMARK 500 ALA B 910 -78.72 -83.91 REMARK 500 SER B 911 55.36 -99.92 REMARK 500 ASP B 930 146.58 -172.67 REMARK 500 ALA B 956 -38.21 -36.44 REMARK 500 ALA B 969 -35.07 -38.98 REMARK 500 ALA B 981 104.00 -58.04 REMARK 500 ALA B 986 -86.54 8.37 REMARK 500 LYS B 991 -71.85 -81.87 REMARK 500 THR B1003 118.16 -38.05 REMARK 500 ASP B1004 136.73 -31.06 REMARK 500 GLU B1005 161.20 167.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 3TBI A 1 112 UNP P13338 VG33_BPT4 1 112 DBREF 3TBI B 831 1057 UNP P0A8V2 RPOB_ECOLI 831 1057 SEQADV 3TBI GLY A -2 UNP P13338 EXPRESSION TAG SEQADV 3TBI PRO A -1 UNP P13338 EXPRESSION TAG SEQADV 3TBI HIS A 0 UNP P13338 EXPRESSION TAG SEQADV 3TBI MSE B 830 UNP P0A8V2 EXPRESSION TAG SEQRES 1 A 115 GLY PRO HIS MSE THR GLN PHE SER LEU ASN ASP ILE ARG SEQRES 2 A 115 PRO VAL ASP GLU THR GLY LEU SER GLU LYS GLU LEU SER SEQRES 3 A 115 ILE LYS LYS GLU LYS ASP GLU ILE ALA LYS LEU LEU ASP SEQRES 4 A 115 ARG GLN GLU ASN GLY PHE ILE ILE GLU LYS MSE VAL GLU SEQRES 5 A 115 GLU PHE GLY MSE SER TYR LEU GLU ALA THR THR ALA PHE SEQRES 6 A 115 LEU GLU GLU ASN SER ILE PRO GLU THR GLN PHE ALA LYS SEQRES 7 A 115 PHE ILE PRO SER GLY ILE ILE GLU LYS ILE GLN SER GLU SEQRES 8 A 115 ALA ILE ASP GLU ASN LEU LEU ARG PRO SER VAL VAL ARG SEQRES 9 A 115 CYS GLU LYS THR ASN THR LEU ASP PHE LEU LEU SEQRES 1 B 228 MSE ILE HIS ILE GLN GLU LEU ALA CYS VAL SER ARG ASP SEQRES 2 B 228 THR LYS LEU GLY PRO GLU GLU ILE THR ALA ASP ILE PRO SEQRES 3 B 228 ASN VAL GLY GLU ALA ALA LEU SER LYS LEU ASP GLU SER SEQRES 4 B 228 GLY ILE VAL TYR ILE GLY ALA GLU VAL THR GLY GLY ASP SEQRES 5 B 228 ILE LEU VAL GLY LYS VAL THR PRO LYS GLY GLU THR GLN SEQRES 6 B 228 LEU THR PRO GLU GLU LYS LEU LEU ARG ALA ILE PHE GLY SEQRES 7 B 228 GLU LYS ALA SER ASP VAL LYS ASP SER SER LEU ARG VAL SEQRES 8 B 228 PRO ASN GLY VAL SER GLY THR VAL ILE ASP VAL GLN VAL SEQRES 9 B 228 PHE THR ARG ASP GLY VAL GLU LYS ASP LYS ARG ALA LEU SEQRES 10 B 228 GLU ILE GLU GLU MSE GLN LEU LYS GLN ALA LYS LYS ASP SEQRES 11 B 228 LEU SER GLU GLU LEU GLN ILE LEU GLU ALA GLY LEU PHE SEQRES 12 B 228 SER ARG ILE ARG ALA VAL LEU VAL ALA GLY GLY VAL GLU SEQRES 13 B 228 ALA GLU LYS LEU ASP LYS LEU PRO ARG ASP ARG TRP LEU SEQRES 14 B 228 GLU LEU GLY LEU THR ASP GLU GLU LYS GLN ASN GLN LEU SEQRES 15 B 228 GLU GLN LEU ALA GLU GLN TYR ASP GLU LEU LYS HIS GLU SEQRES 16 B 228 PHE GLU LYS LYS LEU GLU ALA LYS ARG ARG LYS ILE THR SEQRES 17 B 228 GLN GLY ASP ASP LEU ALA PRO GLY VAL LEU LYS ILE VAL SEQRES 18 B 228 LYS VAL TYR LEU ALA VAL LYS MODRES 3TBI MSE A 47 MET SELENOMETHIONINE MODRES 3TBI MSE A 53 MET SELENOMETHIONINE MODRES 3TBI MSE B 830 MET SELENOMETHIONINE MODRES 3TBI MSE B 951 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 53 8 HET MSE B 830 8 HET MSE B 951 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 1 ASP A 36 PHE A 51 1 16 HELIX 2 2 SER A 54 ASN A 66 1 13 HELIX 3 3 PRO A 69 THR A 71 5 3 HELIX 4 4 GLN A 72 ILE A 77 1 6 HELIX 5 5 PRO A 78 ASN A 93 1 16 HELIX 6 6 ARG A 96 CYS A 102 1 7 HELIX 7 7 GLY B 858 LYS B 864 1 7 HELIX 8 8 GLY B 891 LEU B 895 5 5 HELIX 9 9 THR B 896 GLY B 907 1 12 HELIX 10 10 ASP B 942 ALA B 981 1 40 HELIX 11 11 GLU B 985 LEU B 992 1 8 HELIX 12 12 PRO B 993 TRP B 997 5 5 HELIX 13 13 GLU B 1005 GLN B 1038 1 34 SHEET 1 A 4 GLY B 846 PRO B 847 0 SHEET 2 A 4 HIS B 832 THR B 843 -1 N THR B 843 O GLY B 846 SHEET 3 A 4 VAL B1046 VAL B1056 -1 O LEU B1047 N SER B 840 SHEET 4 A 4 GLY B 926 THR B 935 -1 N PHE B 934 O ILE B1049 SHEET 1 B 3 GLU B 849 ILE B 850 0 SHEET 2 B 3 LYS B 886 PRO B 889 -1 O VAL B 887 N GLU B 849 SHEET 3 B 3 VAL B 913 ASP B 915 -1 O LYS B 914 N THR B 888 SHEET 1 C 2 ILE B 882 VAL B 884 0 SHEET 2 C 2 LEU B 918 ARG B 919 -1 O LEU B 918 N VAL B 884 LINK C LYS A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N VAL A 48 1555 1555 1.33 LINK C GLY A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N SER A 54 1555 1555 1.33 LINK C MSE B 830 N ILE B 831 1555 1555 1.33 LINK C GLU B 950 N MSE B 951 1555 1555 1.33 LINK C MSE B 951 N GLN B 952 1555 1555 1.33 CRYST1 55.218 112.250 164.847 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006066 0.00000