data_3TBJ # _entry.id 3TBJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3TBJ RCSB RCSB067277 WWPDB D_1000067277 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3d3z _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3TBJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Almog, O.' 1 'Gonzalez, A.' 2 # _citation.id primary _citation.title 'The 1.8 A crystal structure of ACTIBIND suggests a mode of action for T2 ribonucleases as antitumorigenic agents.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 1013 _citation.page_last 1020 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22216760 _citation.pdbx_database_id_DOI 10.1021/jm1015507 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Leeuw, M.' 1 ? primary 'Gonzalez, A.' 2 ? primary 'Lanir, A.' 3 ? primary 'Roiz, L.' 4 ? primary 'Smirnoff, P.' 5 ? primary 'Schwartz, B.' 6 ? primary 'Shoseyov, O.' 7 ? primary 'Almog, O.' 8 ? # _cell.entry_id 3TBJ _cell.length_a 78.457 _cell.length_b 78.457 _cell.length_c 103.708 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TBJ _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Actibind 26709.584 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 6 water nat water 18.015 278 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TIDTCSSDSPLSCQTDNEASCCFNSPGGSLLQTQFWDYDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILE AQNRTELLSYMKEYWPDYEGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAG ITPSEDATYKLSDIEDALAAIHDGYPPYVGCEDGALSQLYYYFNVKGSAIGGTYVASERLEDSNCKDSGIKYPPKYS ; _entity_poly.pdbx_seq_one_letter_code_can ;TIDTCSSDSPLSCQTDNEASCCFNSPGGSLLQTQFWDYDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILE AQNRTELLSYMKEYWPDYEGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAG ITPSEDATYKLSDIEDALAAIHDGYPPYVGCEDGALSQLYYYFNVKGSAIGGTYVASERLEDSNCKDSGIKYPPKYS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ILE n 1 3 ASP n 1 4 THR n 1 5 CYS n 1 6 SER n 1 7 SER n 1 8 ASP n 1 9 SER n 1 10 PRO n 1 11 LEU n 1 12 SER n 1 13 CYS n 1 14 GLN n 1 15 THR n 1 16 ASP n 1 17 ASN n 1 18 GLU n 1 19 ALA n 1 20 SER n 1 21 CYS n 1 22 CYS n 1 23 PHE n 1 24 ASN n 1 25 SER n 1 26 PRO n 1 27 GLY n 1 28 GLY n 1 29 SER n 1 30 LEU n 1 31 LEU n 1 32 GLN n 1 33 THR n 1 34 GLN n 1 35 PHE n 1 36 TRP n 1 37 ASP n 1 38 TYR n 1 39 ASP n 1 40 PRO n 1 41 SER n 1 42 ASP n 1 43 GLY n 1 44 PRO n 1 45 SER n 1 46 ASP n 1 47 SER n 1 48 TRP n 1 49 THR n 1 50 ILE n 1 51 HIS n 1 52 GLY n 1 53 LEU n 1 54 TRP n 1 55 PRO n 1 56 ASP n 1 57 ASN n 1 58 CYS n 1 59 ASP n 1 60 GLY n 1 61 THR n 1 62 TYR n 1 63 GLN n 1 64 GLU n 1 65 TYR n 1 66 CYS n 1 67 ASP n 1 68 GLU n 1 69 SER n 1 70 ARG n 1 71 GLU n 1 72 TYR n 1 73 SER n 1 74 ASN n 1 75 ILE n 1 76 THR n 1 77 SER n 1 78 ILE n 1 79 LEU n 1 80 GLU n 1 81 ALA n 1 82 GLN n 1 83 ASN n 1 84 ARG n 1 85 THR n 1 86 GLU n 1 87 LEU n 1 88 LEU n 1 89 SER n 1 90 TYR n 1 91 MET n 1 92 LYS n 1 93 GLU n 1 94 TYR n 1 95 TRP n 1 96 PRO n 1 97 ASP n 1 98 TYR n 1 99 GLU n 1 100 GLY n 1 101 ALA n 1 102 ASP n 1 103 GLU n 1 104 ASP n 1 105 GLU n 1 106 SER n 1 107 PHE n 1 108 TRP n 1 109 GLU n 1 110 HIS n 1 111 GLU n 1 112 TRP n 1 113 ASN n 1 114 LYS n 1 115 HIS n 1 116 GLY n 1 117 THR n 1 118 CYS n 1 119 ILE n 1 120 ASN n 1 121 THR n 1 122 ILE n 1 123 GLU n 1 124 PRO n 1 125 SER n 1 126 CYS n 1 127 TYR n 1 128 THR n 1 129 ASP n 1 130 TYR n 1 131 TYR n 1 132 ALA n 1 133 GLN n 1 134 GLU n 1 135 GLU n 1 136 VAL n 1 137 GLY n 1 138 ASP n 1 139 PHE n 1 140 PHE n 1 141 GLN n 1 142 GLN n 1 143 VAL n 1 144 VAL n 1 145 ASP n 1 146 LEU n 1 147 PHE n 1 148 LYS n 1 149 THR n 1 150 LEU n 1 151 ASP n 1 152 SER n 1 153 TYR n 1 154 THR n 1 155 ALA n 1 156 LEU n 1 157 SER n 1 158 ASP n 1 159 ALA n 1 160 GLY n 1 161 ILE n 1 162 THR n 1 163 PRO n 1 164 SER n 1 165 GLU n 1 166 ASP n 1 167 ALA n 1 168 THR n 1 169 TYR n 1 170 LYS n 1 171 LEU n 1 172 SER n 1 173 ASP n 1 174 ILE n 1 175 GLU n 1 176 ASP n 1 177 ALA n 1 178 LEU n 1 179 ALA n 1 180 ALA n 1 181 ILE n 1 182 HIS n 1 183 ASP n 1 184 GLY n 1 185 TYR n 1 186 PRO n 1 187 PRO n 1 188 TYR n 1 189 VAL n 1 190 GLY n 1 191 CYS n 1 192 GLU n 1 193 ASP n 1 194 GLY n 1 195 ALA n 1 196 LEU n 1 197 SER n 1 198 GLN n 1 199 LEU n 1 200 TYR n 1 201 TYR n 1 202 TYR n 1 203 PHE n 1 204 ASN n 1 205 VAL n 1 206 LYS n 1 207 GLY n 1 208 SER n 1 209 ALA n 1 210 ILE n 1 211 GLY n 1 212 GLY n 1 213 THR n 1 214 TYR n 1 215 VAL n 1 216 ALA n 1 217 SER n 1 218 GLU n 1 219 ARG n 1 220 LEU n 1 221 GLU n 1 222 ASP n 1 223 SER n 1 224 ASN n 1 225 CYS n 1 226 LYS n 1 227 ASP n 1 228 SER n 1 229 GLY n 1 230 ILE n 1 231 LYS n 1 232 TYR n 1 233 PRO n 1 234 PRO n 1 235 LYS n 1 236 TYR n 1 237 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Aspergillus niger' _entity_src_nat.pdbx_ncbi_taxonomy_id 5061 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q45U61_ASPNG _struct_ref.pdbx_db_accession Q45U61 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TIDTCSSDSPLSCQTDNEASCCFNSPGGSLLQTQFWDYDPSDGPSGSWTIHGLWPDNCDGTYQEYCDESREYSNITSILE AQNRTELLSYMKEYWPDYEGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAG ITPSEDATYKLSDIEDALAAIHDGYPPYVGCEDGALSQLYYYFNVKGSAIGGTYVASERLEDSNCKDSGIKYPPKYS ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TBJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 237 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q45U61 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 260 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 260 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3TBJ _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 46 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q45U61 _struct_ref_seq_dif.db_mon_id GLY _struct_ref_seq_dif.pdbx_seq_db_seq_num 69 _struct_ref_seq_dif.details 'SEE REMARK 999' _struct_ref_seq_dif.pdbx_auth_seq_num 69 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3TBJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.45 _exptl_crystal.density_percent_sol 64.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3TBJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.569 _reflns.d_resolution_high 1.77 _reflns.number_obs 35832 _reflns.number_all 35832 _reflns.percent_possible_obs 98.600 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 18.200 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.200 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.770 1.870 91.000 0.807 0.807 1.000 4.200 ? ? ? ? ? ? 1 2 1.870 1.980 100.000 0.499 0.499 1.600 5.400 ? ? ? ? ? ? 1 3 1.980 2.120 100.000 0.281 0.281 2.800 5.400 ? ? ? ? ? ? 1 4 2.120 2.290 100.000 0.170 0.170 4.600 5.500 ? ? ? ? ? ? 1 5 2.290 2.510 100.000 0.116 0.116 6.700 5.500 ? ? ? ? ? ? 1 6 2.510 2.810 100.000 0.073 0.073 10.500 5.400 ? ? ? ? ? ? 1 7 2.810 3.240 100.000 0.044 0.044 16.700 5.400 ? ? ? ? ? ? 1 8 3.240 3.970 100.000 0.027 0.027 25.500 5.300 ? ? ? ? ? ? 1 9 3.970 5.610 99.700 0.022 0.022 27.400 5.100 ? ? ? ? ? ? 1 10 5.610 34.569 99.000 0.018 0.018 32.800 5.000 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3TBJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32945 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.97 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.67 _refine.ls_R_factor_obs 0.15544 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15378 _refine.ls_R_factor_R_free 0.18736 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1738 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.300 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 27.343 _refine.aniso_B[1][1] 1.63 _refine.aniso_B[2][2] 1.63 _refine.aniso_B[3][3] -2.45 _refine.aniso_B[1][2] 0.82 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;(1) There is unmodelled electron density in the active site that can be interpreted as a disordered nucleotide. (2) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.overall_SU_ML 0.066 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.766 _refine.overall_SU_R_Cruickshank_DPI 0.0903 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1878 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 278 _refine_hist.number_atoms_total 2220 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 33.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.021 ? 2185 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1376 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.095 1.982 ? 3013 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.061 3.000 ? 3372 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.905 5.000 ? 273 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.990 26.161 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.223 15.000 ? 310 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 25.273 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 309 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 2554 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 431 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.245 1.500 ? 1297 'X-RAY DIFFRACTION' ? r_mcbond_other 0.426 1.500 ? 517 'X-RAY DIFFRACTION' ? r_mcangle_it 1.998 2.000 ? 2115 'X-RAY DIFFRACTION' ? r_scbond_it 3.338 3.000 ? 888 'X-RAY DIFFRACTION' ? r_scangle_it 4.785 4.500 ? 898 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 2325 _refine_ls_shell.R_factor_R_work 0.333 _refine_ls_shell.percent_reflns_obs 96.52 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 115 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3TBJ _struct.title 'The 1.7A crystal structure of Actibind a T2 ribonucleases as antitumorigenic agents' _struct.pdbx_descriptor Actibind _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TBJ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Hydrolase, ribonuclease' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 67 ? GLU A 71 ? ASP A 90 GLU A 94 5 ? 5 HELX_P HELX_P2 2 ASN A 74 ? GLN A 82 ? ASN A 97 GLN A 105 1 ? 9 HELX_P HELX_P3 3 ARG A 84 ? TRP A 95 ? ARG A 107 TRP A 118 1 ? 12 HELX_P HELX_P4 4 GLY A 100 ? ASP A 102 ? GLY A 123 ASP A 125 5 ? 3 HELX_P HELX_P5 5 GLU A 103 ? HIS A 115 ? GLU A 126 HIS A 138 1 ? 13 HELX_P HELX_P6 6 GLY A 116 ? TYR A 127 ? GLY A 139 TYR A 150 5 ? 12 HELX_P HELX_P7 7 GLN A 133 ? THR A 149 ? GLN A 156 THR A 172 1 ? 17 HELX_P HELX_P8 8 ASP A 151 ? ASP A 158 ? ASP A 174 ASP A 181 1 ? 8 HELX_P HELX_P9 9 LYS A 170 ? ALA A 180 ? LYS A 193 ALA A 203 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 28 A CYS 45 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 58 SG ? ? A CYS 36 A CYS 81 1_555 ? ? ? ? ? ? ? 2.058 ? ? disulf3 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 126 SG ? ? A CYS 44 A CYS 149 1_555 ? ? ? ? ? ? ? 2.059 ? ? disulf4 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 118 SG ? ? A CYS 89 A CYS 141 1_555 ? ? ? ? ? ? ? 2.125 ? ? disulf5 disulf ? ? A CYS 191 SG ? ? ? 1_555 A CYS 225 SG ? ? A CYS 214 A CYS 248 1_555 ? ? ? ? ? ? ? 2.009 ? ? covale1 covale one ? A ASN 74 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 97 B NAG 1 1_555 ? ? ? ? ? ? ? 1.490 ? N-Glycosylation covale2 covale one ? A ASN 83 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 106 A NAG 303 1_555 ? ? ? ? ? ? ? 1.466 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.453 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 25 A . ? SER 48 A PRO 26 A ? PRO 49 A 1 1.42 2 ASP 39 A . ? ASP 62 A PRO 40 A ? PRO 63 A 1 -3.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 49 ? ASP A 56 ? THR A 72 ASP A 79 A 2 SER A 29 ? PHE A 35 ? SER A 52 PHE A 58 A 3 ALA A 195 ? LYS A 206 ? ALA A 218 LYS A 229 A 4 TYR A 188 ? GLU A 192 ? TYR A 211 GLU A 215 B 1 THR A 49 ? ASP A 56 ? THR A 72 ASP A 79 B 2 SER A 29 ? PHE A 35 ? SER A 52 PHE A 58 B 3 ALA A 195 ? LYS A 206 ? ALA A 218 LYS A 229 B 4 THR A 213 ? ALA A 216 ? THR A 236 ALA A 239 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 56 ? O ASP A 79 N SER A 29 ? N SER A 52 A 2 3 N LEU A 30 ? N LEU A 53 O PHE A 203 ? O PHE A 226 A 3 4 O GLN A 198 ? O GLN A 221 N GLY A 190 ? N GLY A 213 B 1 2 O ASP A 56 ? O ASP A 79 N SER A 29 ? N SER A 52 B 2 3 N LEU A 30 ? N LEU A 53 O PHE A 203 ? O PHE A 226 B 3 4 N ASN A 204 ? N ASN A 227 O VAL A 215 ? O VAL A 238 # _atom_sites.entry_id 3TBJ _atom_sites.fract_transf_matrix[1][1] 0.012746 _atom_sites.fract_transf_matrix[1][2] 0.007359 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014718 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009642 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 24 24 THR THR A . n A 1 2 ILE 2 25 25 ILE ILE A . n A 1 3 ASP 3 26 26 ASP ASP A . n A 1 4 THR 4 27 27 THR THR A . n A 1 5 CYS 5 28 28 CYS CYS A . n A 1 6 SER 6 29 29 SER SER A . n A 1 7 SER 7 30 30 SER SER A . n A 1 8 ASP 8 31 31 ASP ASP A . n A 1 9 SER 9 32 32 SER SER A . n A 1 10 PRO 10 33 33 PRO PRO A . n A 1 11 LEU 11 34 34 LEU LEU A . n A 1 12 SER 12 35 35 SER SER A . n A 1 13 CYS 13 36 36 CYS CYS A . n A 1 14 GLN 14 37 37 GLN GLN A . n A 1 15 THR 15 38 38 THR THR A . n A 1 16 ASP 16 39 39 ASP ASP A . n A 1 17 ASN 17 40 40 ASN ASN A . n A 1 18 GLU 18 41 41 GLU GLU A . n A 1 19 ALA 19 42 42 ALA ALA A . n A 1 20 SER 20 43 43 SER SER A . n A 1 21 CYS 21 44 44 CYS CYS A . n A 1 22 CYS 22 45 45 CYS CYS A . n A 1 23 PHE 23 46 46 PHE PHE A . n A 1 24 ASN 24 47 47 ASN ASN A . n A 1 25 SER 25 48 48 SER SER A . n A 1 26 PRO 26 49 49 PRO PRO A . n A 1 27 GLY 27 50 50 GLY GLY A . n A 1 28 GLY 28 51 51 GLY GLY A . n A 1 29 SER 29 52 52 SER SER A . n A 1 30 LEU 30 53 53 LEU LEU A . n A 1 31 LEU 31 54 54 LEU LEU A . n A 1 32 GLN 32 55 55 GLN GLN A . n A 1 33 THR 33 56 56 THR THR A . n A 1 34 GLN 34 57 57 GLN GLN A . n A 1 35 PHE 35 58 58 PHE PHE A . n A 1 36 TRP 36 59 59 TRP TRP A . n A 1 37 ASP 37 60 60 ASP ASP A . n A 1 38 TYR 38 61 61 TYR TYR A . n A 1 39 ASP 39 62 62 ASP ASP A . n A 1 40 PRO 40 63 63 PRO PRO A . n A 1 41 SER 41 64 64 SER SER A . n A 1 42 ASP 42 65 65 ASP ASP A . n A 1 43 GLY 43 66 66 GLY GLY A . n A 1 44 PRO 44 67 67 PRO PRO A . n A 1 45 SER 45 68 68 SER SER A . n A 1 46 ASP 46 69 69 ASP ASP A . n A 1 47 SER 47 70 70 SER SER A . n A 1 48 TRP 48 71 71 TRP TRP A . n A 1 49 THR 49 72 72 THR THR A . n A 1 50 ILE 50 73 73 ILE ILE A . n A 1 51 HIS 51 74 74 HIS HIS A . n A 1 52 GLY 52 75 75 GLY GLY A . n A 1 53 LEU 53 76 76 LEU LEU A . n A 1 54 TRP 54 77 77 TRP TRP A . n A 1 55 PRO 55 78 78 PRO PRO A . n A 1 56 ASP 56 79 79 ASP ASP A . n A 1 57 ASN 57 80 80 ASN ASN A . n A 1 58 CYS 58 81 81 CYS CYS A . n A 1 59 ASP 59 82 82 ASP ASP A . n A 1 60 GLY 60 83 83 GLY GLY A . n A 1 61 THR 61 84 84 THR THR A . n A 1 62 TYR 62 85 85 TYR TYR A . n A 1 63 GLN 63 86 86 GLN GLN A . n A 1 64 GLU 64 87 87 GLU GLU A . n A 1 65 TYR 65 88 88 TYR TYR A . n A 1 66 CYS 66 89 89 CYS CYS A . n A 1 67 ASP 67 90 90 ASP ASP A . n A 1 68 GLU 68 91 91 GLU GLU A . n A 1 69 SER 69 92 92 SER SER A . n A 1 70 ARG 70 93 93 ARG ARG A . n A 1 71 GLU 71 94 94 GLU GLU A . n A 1 72 TYR 72 95 95 TYR TYR A . n A 1 73 SER 73 96 96 SER SER A . n A 1 74 ASN 74 97 97 ASN ASN A . n A 1 75 ILE 75 98 98 ILE ILE A . n A 1 76 THR 76 99 99 THR THR A . n A 1 77 SER 77 100 100 SER SER A . n A 1 78 ILE 78 101 101 ILE ILE A . n A 1 79 LEU 79 102 102 LEU LEU A . n A 1 80 GLU 80 103 103 GLU GLU A . n A 1 81 ALA 81 104 104 ALA ALA A . n A 1 82 GLN 82 105 105 GLN GLN A . n A 1 83 ASN 83 106 106 ASN ASN A . n A 1 84 ARG 84 107 107 ARG ARG A . n A 1 85 THR 85 108 108 THR THR A . n A 1 86 GLU 86 109 109 GLU GLU A . n A 1 87 LEU 87 110 110 LEU LEU A . n A 1 88 LEU 88 111 111 LEU LEU A . n A 1 89 SER 89 112 112 SER SER A . n A 1 90 TYR 90 113 113 TYR TYR A . n A 1 91 MET 91 114 114 MET MET A . n A 1 92 LYS 92 115 115 LYS LYS A . n A 1 93 GLU 93 116 116 GLU GLU A . n A 1 94 TYR 94 117 117 TYR TYR A . n A 1 95 TRP 95 118 118 TRP TRP A . n A 1 96 PRO 96 119 119 PRO PRO A . n A 1 97 ASP 97 120 120 ASP ASP A . n A 1 98 TYR 98 121 121 TYR TYR A . n A 1 99 GLU 99 122 122 GLU GLU A . n A 1 100 GLY 100 123 123 GLY GLY A . n A 1 101 ALA 101 124 124 ALA ALA A . n A 1 102 ASP 102 125 125 ASP ASP A . n A 1 103 GLU 103 126 126 GLU GLU A . n A 1 104 ASP 104 127 127 ASP ASP A . n A 1 105 GLU 105 128 128 GLU GLU A . n A 1 106 SER 106 129 129 SER SER A . n A 1 107 PHE 107 130 130 PHE PHE A . n A 1 108 TRP 108 131 131 TRP TRP A . n A 1 109 GLU 109 132 132 GLU GLU A . n A 1 110 HIS 110 133 133 HIS HIS A . n A 1 111 GLU 111 134 134 GLU GLU A . n A 1 112 TRP 112 135 135 TRP TRP A . n A 1 113 ASN 113 136 136 ASN ASN A . n A 1 114 LYS 114 137 137 LYS LYS A . n A 1 115 HIS 115 138 138 HIS HIS A . n A 1 116 GLY 116 139 139 GLY GLY A . n A 1 117 THR 117 140 140 THR THR A . n A 1 118 CYS 118 141 141 CYS CYS A . n A 1 119 ILE 119 142 142 ILE ILE A . n A 1 120 ASN 120 143 143 ASN ASN A . n A 1 121 THR 121 144 144 THR THR A . n A 1 122 ILE 122 145 145 ILE ILE A . n A 1 123 GLU 123 146 146 GLU GLU A . n A 1 124 PRO 124 147 147 PRO PRO A . n A 1 125 SER 125 148 148 SER SER A . n A 1 126 CYS 126 149 149 CYS CYS A . n A 1 127 TYR 127 150 150 TYR TYR A . n A 1 128 THR 128 151 151 THR THR A . n A 1 129 ASP 129 152 152 ASP ASP A . n A 1 130 TYR 130 153 153 TYR TYR A . n A 1 131 TYR 131 154 154 TYR TYR A . n A 1 132 ALA 132 155 155 ALA ALA A . n A 1 133 GLN 133 156 156 GLN GLN A . n A 1 134 GLU 134 157 157 GLU GLU A . n A 1 135 GLU 135 158 158 GLU GLU A . n A 1 136 VAL 136 159 159 VAL VAL A . n A 1 137 GLY 137 160 160 GLY GLY A . n A 1 138 ASP 138 161 161 ASP ASP A . n A 1 139 PHE 139 162 162 PHE PHE A . n A 1 140 PHE 140 163 163 PHE PHE A . n A 1 141 GLN 141 164 164 GLN GLN A . n A 1 142 GLN 142 165 165 GLN GLN A . n A 1 143 VAL 143 166 166 VAL VAL A . n A 1 144 VAL 144 167 167 VAL VAL A . n A 1 145 ASP 145 168 168 ASP ASP A . n A 1 146 LEU 146 169 169 LEU LEU A . n A 1 147 PHE 147 170 170 PHE PHE A . n A 1 148 LYS 148 171 171 LYS LYS A . n A 1 149 THR 149 172 172 THR THR A . n A 1 150 LEU 150 173 173 LEU LEU A . n A 1 151 ASP 151 174 174 ASP ASP A . n A 1 152 SER 152 175 175 SER SER A . n A 1 153 TYR 153 176 176 TYR TYR A . n A 1 154 THR 154 177 177 THR THR A . n A 1 155 ALA 155 178 178 ALA ALA A . n A 1 156 LEU 156 179 179 LEU LEU A . n A 1 157 SER 157 180 180 SER SER A . n A 1 158 ASP 158 181 181 ASP ASP A . n A 1 159 ALA 159 182 182 ALA ALA A . n A 1 160 GLY 160 183 183 GLY GLY A . n A 1 161 ILE 161 184 184 ILE ILE A . n A 1 162 THR 162 185 185 THR THR A . n A 1 163 PRO 163 186 186 PRO PRO A . n A 1 164 SER 164 187 187 SER SER A . n A 1 165 GLU 165 188 188 GLU GLU A . n A 1 166 ASP 166 189 189 ASP ASP A . n A 1 167 ALA 167 190 190 ALA ALA A . n A 1 168 THR 168 191 191 THR THR A . n A 1 169 TYR 169 192 192 TYR TYR A . n A 1 170 LYS 170 193 193 LYS LYS A . n A 1 171 LEU 171 194 194 LEU LEU A . n A 1 172 SER 172 195 195 SER SER A . n A 1 173 ASP 173 196 196 ASP ASP A . n A 1 174 ILE 174 197 197 ILE ILE A . n A 1 175 GLU 175 198 198 GLU GLU A . n A 1 176 ASP 176 199 199 ASP ASP A . n A 1 177 ALA 177 200 200 ALA ALA A . n A 1 178 LEU 178 201 201 LEU LEU A . n A 1 179 ALA 179 202 202 ALA ALA A . n A 1 180 ALA 180 203 203 ALA ALA A . n A 1 181 ILE 181 204 204 ILE ILE A . n A 1 182 HIS 182 205 205 HIS HIS A . n A 1 183 ASP 183 206 206 ASP ASP A . n A 1 184 GLY 184 207 207 GLY GLY A . n A 1 185 TYR 185 208 208 TYR TYR A . n A 1 186 PRO 186 209 209 PRO PRO A . n A 1 187 PRO 187 210 210 PRO PRO A . n A 1 188 TYR 188 211 211 TYR TYR A . n A 1 189 VAL 189 212 212 VAL VAL A . n A 1 190 GLY 190 213 213 GLY GLY A . n A 1 191 CYS 191 214 214 CYS CYS A . n A 1 192 GLU 192 215 215 GLU GLU A . n A 1 193 ASP 193 216 216 ASP ASP A . n A 1 194 GLY 194 217 217 GLY GLY A . n A 1 195 ALA 195 218 218 ALA ALA A . n A 1 196 LEU 196 219 219 LEU LEU A . n A 1 197 SER 197 220 220 SER SER A . n A 1 198 GLN 198 221 221 GLN GLN A . n A 1 199 LEU 199 222 222 LEU LEU A . n A 1 200 TYR 200 223 223 TYR TYR A . n A 1 201 TYR 201 224 224 TYR TYR A . n A 1 202 TYR 202 225 225 TYR TYR A . n A 1 203 PHE 203 226 226 PHE PHE A . n A 1 204 ASN 204 227 227 ASN ASN A . n A 1 205 VAL 205 228 228 VAL VAL A . n A 1 206 LYS 206 229 229 LYS LYS A . n A 1 207 GLY 207 230 230 GLY GLY A . n A 1 208 SER 208 231 231 SER SER A . n A 1 209 ALA 209 232 232 ALA ALA A . n A 1 210 ILE 210 233 233 ILE ILE A . n A 1 211 GLY 211 234 234 GLY GLY A . n A 1 212 GLY 212 235 235 GLY GLY A . n A 1 213 THR 213 236 236 THR THR A . n A 1 214 TYR 214 237 237 TYR TYR A . n A 1 215 VAL 215 238 238 VAL VAL A . n A 1 216 ALA 216 239 239 ALA ALA A . n A 1 217 SER 217 240 240 SER SER A . n A 1 218 GLU 218 241 241 GLU GLU A . n A 1 219 ARG 219 242 242 ARG ARG A . n A 1 220 LEU 220 243 243 LEU LEU A . n A 1 221 GLU 221 244 244 GLU GLU A . n A 1 222 ASP 222 245 245 ASP ASP A . n A 1 223 SER 223 246 246 SER SER A . n A 1 224 ASN 224 247 247 ASN ASN A . n A 1 225 CYS 225 248 248 CYS CYS A . n A 1 226 LYS 226 249 249 LYS LYS A . n A 1 227 ASP 227 250 250 ASP ASP A . n A 1 228 SER 228 251 251 SER SER A . n A 1 229 GLY 229 252 252 GLY GLY A . n A 1 230 ILE 230 253 253 ILE ILE A . n A 1 231 LYS 231 254 254 LYS LYS A . n A 1 232 TYR 232 255 255 TYR TYR A . n A 1 233 PRO 233 256 256 PRO PRO A . n A 1 234 PRO 234 257 257 PRO PRO A . n A 1 235 LYS 235 258 258 LYS LYS A . n A 1 236 TYR 236 259 259 TYR TYR A . n A 1 237 SER 237 260 260 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 303 3 NAG NAG A . D 4 PO4 1 304 2 PO4 PO4 A . E 4 PO4 1 305 1 PO4 PO4 A . F 5 EDO 1 306 1 EDO EDO A . G 5 EDO 1 307 2 EDO EDO A . H 5 EDO 1 308 3 EDO EDO A . I 6 HOH 1 401 4 HOH HOH A . I 6 HOH 2 402 7 HOH HOH A . I 6 HOH 3 403 8 HOH HOH A . I 6 HOH 4 404 12 HOH HOH A . I 6 HOH 5 405 14 HOH HOH A . I 6 HOH 6 406 16 HOH HOH A . I 6 HOH 7 407 18 HOH HOH A . I 6 HOH 8 408 19 HOH HOH A . I 6 HOH 9 409 22 HOH HOH A . I 6 HOH 10 410 266 HOH HOH A . I 6 HOH 11 411 269 HOH HOH A . I 6 HOH 12 412 271 HOH HOH A . I 6 HOH 13 413 272 HOH HOH A . I 6 HOH 14 414 273 HOH HOH A . I 6 HOH 15 415 278 HOH HOH A . I 6 HOH 16 416 284 HOH HOH A . I 6 HOH 17 417 286 HOH HOH A . I 6 HOH 18 418 288 HOH HOH A . I 6 HOH 19 419 289 HOH HOH A . I 6 HOH 20 420 290 HOH HOH A . I 6 HOH 21 421 292 HOH HOH A . I 6 HOH 22 422 294 HOH HOH A . I 6 HOH 23 423 295 HOH HOH A . I 6 HOH 24 424 296 HOH HOH A . I 6 HOH 25 425 297 HOH HOH A . I 6 HOH 26 426 299 HOH HOH A . I 6 HOH 27 427 301 HOH HOH A . I 6 HOH 28 428 305 HOH HOH A . I 6 HOH 29 429 306 HOH HOH A . I 6 HOH 30 430 307 HOH HOH A . I 6 HOH 31 431 311 HOH HOH A . I 6 HOH 32 432 316 HOH HOH A . I 6 HOH 33 433 321 HOH HOH A . I 6 HOH 34 434 323 HOH HOH A . I 6 HOH 35 435 327 HOH HOH A . I 6 HOH 36 436 329 HOH HOH A . I 6 HOH 37 437 330 HOH HOH A . I 6 HOH 38 438 331 HOH HOH A . I 6 HOH 39 439 334 HOH HOH A . I 6 HOH 40 440 335 HOH HOH A . I 6 HOH 41 441 337 HOH HOH A . I 6 HOH 42 442 338 HOH HOH A . I 6 HOH 43 443 339 HOH HOH A . I 6 HOH 44 444 340 HOH HOH A . I 6 HOH 45 445 341 HOH HOH A . I 6 HOH 46 446 348 HOH HOH A . I 6 HOH 47 447 356 HOH HOH A . I 6 HOH 48 448 359 HOH HOH A . I 6 HOH 49 449 370 HOH HOH A . I 6 HOH 50 450 372 HOH HOH A . I 6 HOH 51 451 375 HOH HOH A . I 6 HOH 52 452 378 HOH HOH A . I 6 HOH 53 453 382 HOH HOH A . I 6 HOH 54 454 384 HOH HOH A . I 6 HOH 55 455 386 HOH HOH A . I 6 HOH 56 456 391 HOH HOH A . I 6 HOH 57 457 392 HOH HOH A . I 6 HOH 58 458 393 HOH HOH A . I 6 HOH 59 459 395 HOH HOH A . I 6 HOH 60 460 397 HOH HOH A . I 6 HOH 61 461 398 HOH HOH A . I 6 HOH 62 462 399 HOH HOH A . I 6 HOH 63 463 400 HOH HOH A . I 6 HOH 64 464 402 HOH HOH A . I 6 HOH 65 465 404 HOH HOH A . I 6 HOH 66 466 406 HOH HOH A . I 6 HOH 67 467 412 HOH HOH A . I 6 HOH 68 468 413 HOH HOH A . I 6 HOH 69 469 414 HOH HOH A . I 6 HOH 70 470 415 HOH HOH A . I 6 HOH 71 471 416 HOH HOH A . I 6 HOH 72 472 417 HOH HOH A . I 6 HOH 73 473 418 HOH HOH A . I 6 HOH 74 474 419 HOH HOH A . I 6 HOH 75 475 423 HOH HOH A . I 6 HOH 76 476 427 HOH HOH A . I 6 HOH 77 477 431 HOH HOH A . I 6 HOH 78 478 432 HOH HOH A . I 6 HOH 79 479 434 HOH HOH A . I 6 HOH 80 480 439 HOH HOH A . I 6 HOH 81 481 441 HOH HOH A . I 6 HOH 82 482 442 HOH HOH A . I 6 HOH 83 483 443 HOH HOH A . I 6 HOH 84 484 445 HOH HOH A . I 6 HOH 85 485 447 HOH HOH A . I 6 HOH 86 486 453 HOH HOH A . I 6 HOH 87 487 454 HOH HOH A . I 6 HOH 88 488 455 HOH HOH A . I 6 HOH 89 489 459 HOH HOH A . I 6 HOH 90 490 462 HOH HOH A . I 6 HOH 91 491 465 HOH HOH A . I 6 HOH 92 492 468 HOH HOH A . I 6 HOH 93 493 473 HOH HOH A . I 6 HOH 94 494 476 HOH HOH A . I 6 HOH 95 495 477 HOH HOH A . I 6 HOH 96 496 478 HOH HOH A . I 6 HOH 97 497 479 HOH HOH A . I 6 HOH 98 498 480 HOH HOH A . I 6 HOH 99 499 481 HOH HOH A . I 6 HOH 100 500 482 HOH HOH A . I 6 HOH 101 501 484 HOH HOH A . I 6 HOH 102 502 485 HOH HOH A . I 6 HOH 103 503 487 HOH HOH A . I 6 HOH 104 504 488 HOH HOH A . I 6 HOH 105 505 489 HOH HOH A . I 6 HOH 106 506 490 HOH HOH A . I 6 HOH 107 507 491 HOH HOH A . I 6 HOH 108 508 493 HOH HOH A . I 6 HOH 109 509 494 HOH HOH A . I 6 HOH 110 510 495 HOH HOH A . I 6 HOH 111 511 497 HOH HOH A . I 6 HOH 112 512 499 HOH HOH A . I 6 HOH 113 513 500 HOH HOH A . I 6 HOH 114 514 502 HOH HOH A . I 6 HOH 115 515 503 HOH HOH A . I 6 HOH 116 516 504 HOH HOH A . I 6 HOH 117 517 505 HOH HOH A . I 6 HOH 118 518 506 HOH HOH A . I 6 HOH 119 519 510 HOH HOH A . I 6 HOH 120 520 512 HOH HOH A . I 6 HOH 121 521 513 HOH HOH A . I 6 HOH 122 522 514 HOH HOH A . I 6 HOH 123 523 515 HOH HOH A . I 6 HOH 124 524 517 HOH HOH A . I 6 HOH 125 525 519 HOH HOH A . I 6 HOH 126 526 1000 HOH HOH A . I 6 HOH 127 527 1001 HOH HOH A . I 6 HOH 128 528 1 HOH HOH A . I 6 HOH 129 529 2 HOH HOH A . I 6 HOH 130 530 24 HOH HOH A . I 6 HOH 131 531 26 HOH HOH A . I 6 HOH 132 532 27 HOH HOH A . I 6 HOH 133 533 28 HOH HOH A . I 6 HOH 134 534 33 HOH HOH A . I 6 HOH 135 535 34 HOH HOH A . I 6 HOH 136 536 35 HOH HOH A . I 6 HOH 137 537 36 HOH HOH A . I 6 HOH 138 538 37 HOH HOH A . I 6 HOH 139 539 38 HOH HOH A . I 6 HOH 140 540 40 HOH HOH A . I 6 HOH 141 541 42 HOH HOH A . I 6 HOH 142 542 43 HOH HOH A . I 6 HOH 143 543 44 HOH HOH A . I 6 HOH 144 544 45 HOH HOH A . I 6 HOH 145 545 47 HOH HOH A . I 6 HOH 146 546 49 HOH HOH A . I 6 HOH 147 547 50 HOH HOH A . I 6 HOH 148 548 51 HOH HOH A . I 6 HOH 149 549 53 HOH HOH A . I 6 HOH 150 550 55 HOH HOH A . I 6 HOH 151 551 56 HOH HOH A . I 6 HOH 152 552 57 HOH HOH A . I 6 HOH 153 553 59 HOH HOH A . I 6 HOH 154 554 61 HOH HOH A . I 6 HOH 155 555 63 HOH HOH A . I 6 HOH 156 556 65 HOH HOH A . I 6 HOH 157 557 67 HOH HOH A . I 6 HOH 158 558 69 HOH HOH A . I 6 HOH 159 559 70 HOH HOH A . I 6 HOH 160 560 71 HOH HOH A . I 6 HOH 161 561 72 HOH HOH A . I 6 HOH 162 562 73 HOH HOH A . I 6 HOH 163 563 74 HOH HOH A . I 6 HOH 164 564 75 HOH HOH A . I 6 HOH 165 565 77 HOH HOH A . I 6 HOH 166 566 78 HOH HOH A . I 6 HOH 167 567 79 HOH HOH A . I 6 HOH 168 568 80 HOH HOH A . I 6 HOH 169 569 81 HOH HOH A . I 6 HOH 170 570 82 HOH HOH A . I 6 HOH 171 571 83 HOH HOH A . I 6 HOH 172 572 84 HOH HOH A . I 6 HOH 173 573 85 HOH HOH A . I 6 HOH 174 574 86 HOH HOH A . I 6 HOH 175 575 87 HOH HOH A . I 6 HOH 176 576 88 HOH HOH A . I 6 HOH 177 577 89 HOH HOH A . I 6 HOH 178 578 91 HOH HOH A . I 6 HOH 179 579 92 HOH HOH A . I 6 HOH 180 580 93 HOH HOH A . I 6 HOH 181 581 94 HOH HOH A . I 6 HOH 182 582 95 HOH HOH A . I 6 HOH 183 583 98 HOH HOH A . I 6 HOH 184 584 102 HOH HOH A . I 6 HOH 185 585 103 HOH HOH A . I 6 HOH 186 586 104 HOH HOH A . I 6 HOH 187 587 105 HOH HOH A . I 6 HOH 188 588 106 HOH HOH A . I 6 HOH 189 589 107 HOH HOH A . I 6 HOH 190 590 108 HOH HOH A . I 6 HOH 191 591 110 HOH HOH A . I 6 HOH 192 592 111 HOH HOH A . I 6 HOH 193 593 112 HOH HOH A . I 6 HOH 194 594 113 HOH HOH A . I 6 HOH 195 595 116 HOH HOH A . I 6 HOH 196 596 118 HOH HOH A . I 6 HOH 197 597 121 HOH HOH A . I 6 HOH 198 598 122 HOH HOH A . I 6 HOH 199 599 123 HOH HOH A . I 6 HOH 200 600 124 HOH HOH A . I 6 HOH 201 601 125 HOH HOH A . I 6 HOH 202 602 126 HOH HOH A . I 6 HOH 203 603 128 HOH HOH A . I 6 HOH 204 604 129 HOH HOH A . I 6 HOH 205 605 130 HOH HOH A . I 6 HOH 206 606 132 HOH HOH A . I 6 HOH 207 607 135 HOH HOH A . I 6 HOH 208 608 137 HOH HOH A . I 6 HOH 209 609 138 HOH HOH A . I 6 HOH 210 610 139 HOH HOH A . I 6 HOH 211 611 140 HOH HOH A . I 6 HOH 212 612 141 HOH HOH A . I 6 HOH 213 613 142 HOH HOH A . I 6 HOH 214 614 144 HOH HOH A . I 6 HOH 215 615 145 HOH HOH A . I 6 HOH 216 616 149 HOH HOH A . I 6 HOH 217 617 158 HOH HOH A . I 6 HOH 218 618 161 HOH HOH A . I 6 HOH 219 619 162 HOH HOH A . I 6 HOH 220 620 164 HOH HOH A . I 6 HOH 221 621 167 HOH HOH A . I 6 HOH 222 622 168 HOH HOH A . I 6 HOH 223 623 171 HOH HOH A . I 6 HOH 224 624 172 HOH HOH A . I 6 HOH 225 625 173 HOH HOH A . I 6 HOH 226 626 175 HOH HOH A . I 6 HOH 227 627 177 HOH HOH A . I 6 HOH 228 628 178 HOH HOH A . I 6 HOH 229 629 180 HOH HOH A . I 6 HOH 230 630 181 HOH HOH A . I 6 HOH 231 631 182 HOH HOH A . I 6 HOH 232 632 183 HOH HOH A . I 6 HOH 233 633 184 HOH HOH A . I 6 HOH 234 634 185 HOH HOH A . I 6 HOH 235 635 186 HOH HOH A . I 6 HOH 236 636 187 HOH HOH A . I 6 HOH 237 637 188 HOH HOH A . I 6 HOH 238 638 189 HOH HOH A . I 6 HOH 239 639 191 HOH HOH A . I 6 HOH 240 640 192 HOH HOH A . I 6 HOH 241 641 193 HOH HOH A . I 6 HOH 242 642 194 HOH HOH A . I 6 HOH 243 643 195 HOH HOH A . I 6 HOH 244 644 196 HOH HOH A . I 6 HOH 245 645 197 HOH HOH A . I 6 HOH 246 646 198 HOH HOH A . I 6 HOH 247 647 199 HOH HOH A . I 6 HOH 248 648 200 HOH HOH A . I 6 HOH 249 649 201 HOH HOH A . I 6 HOH 250 650 202 HOH HOH A . I 6 HOH 251 651 203 HOH HOH A . I 6 HOH 252 652 204 HOH HOH A . I 6 HOH 253 653 205 HOH HOH A . I 6 HOH 254 654 206 HOH HOH A . I 6 HOH 255 655 210 HOH HOH A . I 6 HOH 256 656 212 HOH HOH A . I 6 HOH 257 657 213 HOH HOH A . I 6 HOH 258 658 214 HOH HOH A . I 6 HOH 259 659 215 HOH HOH A . I 6 HOH 260 660 218 HOH HOH A . I 6 HOH 261 661 219 HOH HOH A . I 6 HOH 262 662 220 HOH HOH A . I 6 HOH 263 663 221 HOH HOH A . I 6 HOH 264 664 226 HOH HOH A . I 6 HOH 265 665 228 HOH HOH A . I 6 HOH 266 666 229 HOH HOH A . I 6 HOH 267 667 232 HOH HOH A . I 6 HOH 268 668 233 HOH HOH A . I 6 HOH 269 669 234 HOH HOH A . I 6 HOH 270 670 238 HOH HOH A . I 6 HOH 271 671 241 HOH HOH A . I 6 HOH 272 672 244 HOH HOH A . I 6 HOH 273 673 246 HOH HOH A . I 6 HOH 274 674 247 HOH HOH A . I 6 HOH 275 675 248 HOH HOH A . I 6 HOH 276 676 249 HOH HOH A . I 6 HOH 277 677 257 HOH HOH A . I 6 HOH 278 678 263 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 83 A ASN 106 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 74 A ASN 97 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-22 2 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' struct_asym 14 2 'Structure model' struct_conn 15 2 'Structure model' struct_site 16 2 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_asym_id' 2 2 'Structure model' '_atom_site.auth_seq_id' 3 2 'Structure model' '_atom_site.label_asym_id' 4 2 'Structure model' '_atom_site.label_entity_id' 5 2 'Structure model' '_chem_comp.name' 6 2 'Structure model' '_chem_comp.type' 7 2 'Structure model' '_pdbx_entity_nonpoly.entity_id' 8 2 'Structure model' '_pdbx_entity_nonpoly.name' 9 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 2 'Structure model' '_struct_conn.pdbx_dist_value' 11 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 2 'Structure model' '_struct_conn.pdbx_role' 13 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 29.6420 _pdbx_refine_tls.origin_y -16.5890 _pdbx_refine_tls.origin_z 37.0430 _pdbx_refine_tls.T[1][1] 0.1334 _pdbx_refine_tls.T[2][2] 0.0324 _pdbx_refine_tls.T[3][3] 0.0195 _pdbx_refine_tls.T[1][2] -0.0012 _pdbx_refine_tls.T[1][3] 0.0037 _pdbx_refine_tls.T[2][3] 0.0155 _pdbx_refine_tls.L[1][1] 0.6316 _pdbx_refine_tls.L[2][2] 0.2179 _pdbx_refine_tls.L[3][3] 1.1620 _pdbx_refine_tls.L[1][2] 0.2629 _pdbx_refine_tls.L[1][3] 0.2854 _pdbx_refine_tls.L[2][3] 0.2369 _pdbx_refine_tls.S[1][1] 0.0071 _pdbx_refine_tls.S[1][2] 0.0363 _pdbx_refine_tls.S[1][3] 0.0101 _pdbx_refine_tls.S[2][1] 0.0044 _pdbx_refine_tls.S[2][2] 0.0390 _pdbx_refine_tls.S[2][3] 0.0290 _pdbx_refine_tls.S[3][1] -0.1958 _pdbx_refine_tls.S[3][2] 0.0594 _pdbx_refine_tls.S[3][3] -0.0461 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 24 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 260 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # _pdbx_phasing_MR.entry_id 3TBJ _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 32.290 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 32.290 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 Blu-Ice . ? ? ? ? 'data collection' ? ? ? # _pdbx_entry_details.entry_id 3TBJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'AUTHORS STATE THAT RESIDUE 69 IS ASP ACCORDING TO THE CRYSTAL STRUCTURE, AND THIS IS A WILD TYPE NATIVE PROTEIN.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 94 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 445 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 79 ? ? CG A ASP 79 ? ? OD2 A ASP 79 ? ? 111.71 118.30 -6.59 0.90 N 2 1 NE A ARG 93 ? ? CZ A ARG 93 ? ? NH1 A ARG 93 ? ? 124.28 120.30 3.98 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 36 ? ? 63.71 -42.18 2 1 ASN A 97 ? ? -151.96 49.92 3 1 ASN A 97 ? ? -154.23 49.92 4 1 ARG A 107 ? ? -95.13 57.15 5 1 HIS A 205 ? ? -144.62 38.13 6 1 HIS A 205 ? ? -144.62 38.70 7 1 SER A 220 ? ? -140.48 -41.21 8 1 ASP A 245 ? A -90.79 -63.44 9 1 ASP A 245 ? B -91.82 -65.34 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 X NAG 1 n B 2 NAG 2 B NAG 2 X NAG 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'PHOSPHATE ION' PO4 5 1,2-ETHANEDIOL EDO 6 water HOH #