HEADER METAL BINDING PROTEIN 07-AUG-11 3TBM TITLE CRYSTAL STRUCTURE OF A TYPE 4 CDGSH IRON-SULFUR PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-66; COMPND 5 SYNONYM: TYPE 4 CDGSH IRON-SULFUR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_TAXID: 267608; SOURCE 4 STRAIN: GMI1000; SOURCE 5 GENE: RSC2912; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS IRON-SULFUR, CDGSH, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIN,L.ZHANG,K.YE REVDAT 3 20-MAR-24 3TBM 1 REMARK SEQADV LINK REVDAT 2 12-OCT-11 3TBM 1 JRNL REVDAT 1 05-OCT-11 3TBM 0 JRNL AUTH J.LIN,L.ZHANG,S.LAI,K.YE JRNL TITL STRUCTURE AND MOLECULAR EVOLUTION OF CDGSH IRON-SULFUR JRNL TITL 2 DOMAINS. JRNL REF PLOS ONE V. 6 24790 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21949752 JRNL DOI 10.1371/JOURNAL.PONE.0024790 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 13744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.4721 - 3.0707 0.98 2786 139 0.1987 0.2296 REMARK 3 2 3.0707 - 2.4383 0.99 2782 152 0.2168 0.2754 REMARK 3 3 2.4383 - 2.1303 0.97 2708 139 0.2077 0.2579 REMARK 3 4 2.1303 - 1.9357 0.91 2523 143 0.2018 0.2509 REMARK 3 5 1.9357 - 1.7970 0.81 2241 131 0.2058 0.2760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 40.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21200 REMARK 3 B22 (A**2) : -7.32630 REMARK 3 B33 (A**2) : 6.83200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.91960 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1032 REMARK 3 ANGLE : 1.645 1388 REMARK 3 CHIRALITY : 0.081 138 REMARK 3 PLANARITY : 0.005 178 REMARK 3 DIHEDRAL : 20.171 396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:18) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8152 25.0894 13.1260 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1252 REMARK 3 T33: 0.1372 T12: -0.0048 REMARK 3 T13: 0.0213 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.1595 L22: 4.5468 REMARK 3 L33: 6.2442 L12: -0.4757 REMARK 3 L13: -3.0778 L23: 1.1280 REMARK 3 S TENSOR REMARK 3 S11: 0.1435 S12: 0.2855 S13: 0.3132 REMARK 3 S21: -0.3972 S22: 0.3369 S23: -0.6305 REMARK 3 S31: -0.0529 S32: 0.4167 S33: -0.3610 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 19:29) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6293 14.3877 5.3946 REMARK 3 T TENSOR REMARK 3 T11: 0.4329 T22: 0.3358 REMARK 3 T33: 0.3843 T12: 0.0359 REMARK 3 T13: -0.1665 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 8.9991 L22: 4.0471 REMARK 3 L33: 4.8566 L12: 5.4359 REMARK 3 L13: -0.6242 L23: -2.2811 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 1.0128 S13: -0.3185 REMARK 3 S21: -0.5509 S22: 0.9702 S23: 0.3016 REMARK 3 S31: 0.8395 S32: -0.4393 S33: -0.7329 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 30:36) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2061 23.0169 3.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.4126 T22: 1.0080 REMARK 3 T33: 0.5458 T12: 0.0858 REMARK 3 T13: -0.1988 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 2.5733 L22: 2.2728 REMARK 3 L33: 1.4447 L12: 1.6290 REMARK 3 L13: -0.8690 L23: 0.6460 REMARK 3 S TENSOR REMARK 3 S11: -0.3641 S12: 0.6538 S13: 0.4979 REMARK 3 S21: -0.4369 S22: -0.0796 S23: 0.5008 REMARK 3 S31: -0.5632 S32: -0.0406 S33: 0.2120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 37:58) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9866 24.4227 18.4768 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.0709 REMARK 3 T33: 0.1687 T12: 0.0113 REMARK 3 T13: 0.0446 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.8750 L22: 4.1163 REMARK 3 L33: 3.5613 L12: 0.3280 REMARK 3 L13: 1.5567 L23: 0.5736 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: -0.0818 S13: -0.0303 REMARK 3 S21: 0.0944 S22: -0.0371 S23: 0.6031 REMARK 3 S31: -0.3384 S32: -0.3187 S33: -0.0494 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 59:66) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0802 25.2261 25.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.2440 REMARK 3 T33: 0.1174 T12: -0.0308 REMARK 3 T13: -0.0400 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 4.6273 L22: 4.5599 REMARK 3 L33: 5.0287 L12: 0.4201 REMARK 3 L13: -1.0995 L23: 0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -1.2519 S13: 0.4956 REMARK 3 S21: 0.9927 S22: 0.0643 S23: -0.4696 REMARK 3 S31: -0.2289 S32: 0.5391 S33: -0.0347 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 5:21) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7306 12.0554 10.1768 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.0957 REMARK 3 T33: 0.1567 T12: 0.0029 REMARK 3 T13: 0.0041 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 5.5697 L22: 5.6710 REMARK 3 L33: 5.9435 L12: 1.5450 REMARK 3 L13: -0.6781 L23: -1.2440 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: 0.5837 S13: -0.4065 REMARK 3 S21: -0.5145 S22: 0.0207 S23: 0.2061 REMARK 3 S31: 0.1096 S32: -0.0964 S33: 0.0857 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 22:27) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8217 24.5171 12.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.2601 REMARK 3 T33: 0.5452 T12: -0.0073 REMARK 3 T13: -0.0659 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 8.7840 L22: 2.1931 REMARK 3 L33: 2.5423 L12: 0.3408 REMARK 3 L13: 0.0696 L23: 2.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.3838 S12: 0.2255 S13: 1.1484 REMARK 3 S21: -0.6383 S22: 0.2735 S23: 0.0022 REMARK 3 S31: -0.8681 S32: 0.0983 S33: 0.0975 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 28:37) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8858 15.0059 11.0633 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.5367 REMARK 3 T33: 0.8794 T12: 0.0268 REMARK 3 T13: 0.0367 T23: -0.1691 REMARK 3 L TENSOR REMARK 3 L11: 3.8592 L22: 1.2143 REMARK 3 L33: 2.6541 L12: 2.1224 REMARK 3 L13: 2.9562 L23: 1.4907 REMARK 3 S TENSOR REMARK 3 S11: 0.3231 S12: 0.4846 S13: -1.2446 REMARK 3 S21: -0.0132 S22: 0.5699 S23: -1.4740 REMARK 3 S31: 0.2990 S32: 0.8126 S33: -0.5461 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 38:56) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5329 13.0790 21.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.0734 REMARK 3 T33: 0.1057 T12: 0.0164 REMARK 3 T13: 0.0135 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 4.6931 L22: 5.4766 REMARK 3 L33: 4.0419 L12: 1.2554 REMARK 3 L13: 1.4676 L23: -0.2639 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.0761 S13: 0.2337 REMARK 3 S21: 0.4195 S22: -0.0644 S23: -0.2595 REMARK 3 S31: 0.0024 S32: 0.1850 S33: 0.0148 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 57:66) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1135 10.3981 23.5987 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0665 REMARK 3 T33: 0.1921 T12: -0.0423 REMARK 3 T13: 0.0620 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 2.4572 L22: 6.7650 REMARK 3 L33: 6.1734 L12: -1.6484 REMARK 3 L13: -0.0495 L23: 0.3991 REMARK 3 S TENSOR REMARK 3 S11: 0.2493 S12: -0.4110 S13: -0.5200 REMARK 3 S21: 0.5415 S22: -0.0669 S23: 1.1574 REMARK 3 S31: 0.2265 S32: -0.9541 S33: -0.8541 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.797 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5% PEG 5000, 0.9M POTASSIUM SODIUM REMARK 280 TARTRATE, 100MM TRIS-HCL, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.78300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.21700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.78300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.21700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 66 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 60 52.18 36.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 67 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 41 SG REMARK 620 2 FES A 67 S1 117.4 REMARK 620 3 FES A 67 S2 110.3 104.3 REMARK 620 4 CYS A 43 SG 101.0 114.1 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 67 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 FES A 67 S1 123.9 REMARK 620 3 FES A 67 S2 111.2 104.3 REMARK 620 4 HIS A 56 ND1 93.9 108.1 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 67 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 41 SG REMARK 620 2 FES B 67 S1 115.2 REMARK 620 3 FES B 67 S2 112.7 102.7 REMARK 620 4 CYS B 43 SG 101.6 114.6 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 67 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 52 SG REMARK 620 2 FES B 67 S1 123.5 REMARK 620 3 FES B 67 S2 109.5 102.7 REMARK 620 4 HIS B 56 ND1 95.4 110.8 115.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 68 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 69 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TBN RELATED DB: PDB REMARK 900 RELATED ID: 3TBO RELATED DB: PDB REMARK 900 RELATED ID: 2QD0 RELATED DB: PDB DBREF 3TBM A 1 66 UNP Q8XVB9 Q8XVB9_RALSO 1 66 DBREF 3TBM B 1 66 UNP Q8XVB9 Q8XVB9_RALSO 1 66 SEQADV 3TBM GLY A -2 UNP Q8XVB9 EXPRESSION TAG SEQADV 3TBM PRO A -1 UNP Q8XVB9 EXPRESSION TAG SEQADV 3TBM HIS A 0 UNP Q8XVB9 EXPRESSION TAG SEQADV 3TBM GLY B -2 UNP Q8XVB9 EXPRESSION TAG SEQADV 3TBM PRO B -1 UNP Q8XVB9 EXPRESSION TAG SEQADV 3TBM HIS B 0 UNP Q8XVB9 EXPRESSION TAG SEQRES 1 A 69 GLY PRO HIS MET ALA ASP ASP VAL VAL ILE THR ALA ARG SEQRES 2 A 69 ASN ASN GLY PRO TYR HIS ILE LYS GLY SER PHE ARG ILE SEQRES 3 A 69 VAL THR GLN GLY GLY ARG GLU LEU PRO VAL GLU GLN GLY SEQRES 4 A 69 GLN ALA TRP LEU CYS ARG CYS GLY HIS SER LEU ASN LYS SEQRES 5 A 69 PRO PHE CYS ASP GLY SER HIS LYS ARG VAL GLU PHE ASP SEQRES 6 A 69 SER ASN LEU ASP SEQRES 1 B 69 GLY PRO HIS MET ALA ASP ASP VAL VAL ILE THR ALA ARG SEQRES 2 B 69 ASN ASN GLY PRO TYR HIS ILE LYS GLY SER PHE ARG ILE SEQRES 3 B 69 VAL THR GLN GLY GLY ARG GLU LEU PRO VAL GLU GLN GLY SEQRES 4 B 69 GLN ALA TRP LEU CYS ARG CYS GLY HIS SER LEU ASN LYS SEQRES 5 B 69 PRO PHE CYS ASP GLY SER HIS LYS ARG VAL GLU PHE ASP SEQRES 6 B 69 SER ASN LEU ASP HET FES A 67 4 HET FES B 67 4 HET 2PE B 68 28 HET TLA B 69 10 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM 2PE NONAETHYLENE GLYCOL HETNAM TLA L(+)-TARTARIC ACID FORMUL 3 FES 2(FE2 S2) FORMUL 5 2PE C18 H38 O10 FORMUL 6 TLA C4 H6 O6 FORMUL 7 HOH *94(H2 O) HELIX 1 1 GLY A 54 VAL A 59 1 6 HELIX 2 2 GLY B 54 VAL B 59 1 6 SHEET 1 A 5 GLN A 37 LEU A 40 0 SHEET 2 A 5 TYR A 15 LYS A 18 -1 N ILE A 17 O ALA A 38 SHEET 3 A 5 VAL A 6 ALA A 9 -1 N THR A 8 O HIS A 16 SHEET 4 A 5 ARG B 22 THR B 25 1 O ARG B 22 N ILE A 7 SHEET 5 A 5 GLU B 30 LEU B 31 -1 O LEU B 31 N ILE B 23 SHEET 1 B 5 GLU A 30 LEU A 31 0 SHEET 2 B 5 ARG A 22 THR A 25 -1 N ILE A 23 O LEU A 31 SHEET 3 B 5 VAL B 6 ALA B 9 1 O ILE B 7 N ARG A 22 SHEET 4 B 5 TYR B 15 LYS B 18 -1 O HIS B 16 N THR B 8 SHEET 5 B 5 GLN B 37 LEU B 40 -1 O LEU B 40 N TYR B 15 LINK SG CYS A 41 FE1 FES A 67 1555 1555 2.38 LINK SG CYS A 43 FE1 FES A 67 1555 1555 2.28 LINK SG CYS A 52 FE2 FES A 67 1555 1555 2.32 LINK ND1 HIS A 56 FE2 FES A 67 1555 1555 2.23 LINK SG CYS B 41 FE1 FES B 67 1555 1555 2.37 LINK SG CYS B 43 FE1 FES B 67 1555 1555 2.32 LINK SG CYS B 52 FE2 FES B 67 1555 1555 2.27 LINK ND1 HIS B 56 FE2 FES B 67 1555 1555 2.25 CISPEP 1 LYS A 49 PRO A 50 0 4.19 CISPEP 2 LYS B 49 PRO B 50 0 3.63 SITE 1 AC1 9 PRO A 14 CYS A 41 ARG A 42 CYS A 43 SITE 2 AC1 9 SER A 46 CYS A 52 ASP A 53 SER A 55 SITE 3 AC1 9 HIS A 56 SITE 1 AC2 10 PRO B 14 CYS B 41 ARG B 42 CYS B 43 SITE 2 AC2 10 SER B 46 CYS B 52 ASP B 53 GLY B 54 SITE 3 AC2 10 SER B 55 HIS B 56 SITE 1 AC3 17 TRP A 39 LEU A 47 CYS A 52 ASP A 53 SITE 2 AC3 17 GLY A 54 SER A 55 ARG A 58 HOH A 108 SITE 3 AC3 17 HOH A 112 CYS B 52 ASP B 53 GLY B 54 SITE 4 AC3 17 ARG B 58 HOH B 72 HOH B 85 HOH B 86 SITE 5 AC3 17 HOH B 114 SITE 1 AC4 17 ARG A 10 ASN A 11 ASN A 12 GLY A 13 SITE 2 AC4 17 PRO A 14 GLN A 26 HIS A 56 LYS A 57 SITE 3 AC4 17 ARG B 10 ASN B 11 ASN B 12 PRO B 14 SITE 4 AC4 17 GLN B 26 HIS B 56 LYS B 57 HOH B 80 SITE 5 AC4 17 HOH B 93 CRYST1 73.566 54.434 43.517 90.00 113.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013593 0.000000 0.005990 0.00000 SCALE2 0.000000 0.018371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025111 0.00000