HEADER TRANSFERASE 08-AUG-11 3TC1 TITLE CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM TITLE 2 HELICOBACTER PYLORI CAVEAT 3TC1 CHIRALITY ERROR AT CA CENTER OF LYS A 210. COMPND MOL_ID: 1; COMPND 2 MOLECULE: OCTAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 102618; SOURCE 4 STRAIN: NCTC11637; SOURCE 5 GENE: HP0240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 22B KEYWDS ALL ALPHA-HELICES FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.ZHANG,X.L.ZHANG,D.F.LI,Q.M.ZOU,D.C.WANG REVDAT 3 20-MAR-24 3TC1 1 REMARK LINK REVDAT 2 09-NOV-11 3TC1 1 REMARK CAVEAT REVDAT 1 31-AUG-11 3TC1 0 JRNL AUTH J.Y.ZHANG,X.L.ZHANG,D.F.LI,Q.M.ZOU,D.C.WANG JRNL TITL CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM JRNL TITL 2 HELICOBACTER PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4314 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08100 REMARK 3 B22 (A**2) : 0.08100 REMARK 3 B33 (A**2) : -0.16300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.03 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.04 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 58.91 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-08; 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A; BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901; 0.97888, 0.97926, REMARK 200 0.96403 REMARK 200 MONOCHROMATOR : GRAPHITE; GRAPHITE REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS; RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 54.665 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : 0.36600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: DM 6.0, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 100MM SODIUM ACETATE, REMARK 280 200MM MGCL2, PH 4.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.70500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.66500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.85250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.66500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.55750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.85250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.55750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.70500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 81 REMARK 465 LYS A 82 REMARK 465 ALA A 83 REMARK 465 THR A 84 REMARK 465 MET A 85 REMARK 465 ARG A 86 REMARK 465 ARG A 87 REMARK 465 LYS A 88 REMARK 465 LEU A 89 REMARK 465 PRO A 90 REMARK 465 SER A 91 REMARK 465 ILE A 92 REMARK 465 ASN A 93 REMARK 465 ALA A 94 REMARK 465 LEU A 95 REMARK 465 PHE A 96 REMARK 465 THR A 306 REMARK 465 PHE A 307 REMARK 465 LEU A 308 REMARK 465 GLU A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 THR B 306 REMARK 465 PHE B 307 REMARK 465 LEU B 308 REMARK 465 GLU B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 180 C LYS B 180 O -0.149 REMARK 500 ASP B 181 C ASP B 181 O -0.124 REMARK 500 ALA B 182 CA ALA B 182 CB -0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 290 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 -69.49 -145.24 REMARK 500 PHE A 99 -2.95 -145.71 REMARK 500 THR A 163 -51.58 -134.33 REMARK 500 ASP A 181 98.65 -67.74 REMARK 500 ARG B 87 46.01 76.28 REMARK 500 LYS B 88 -12.14 69.73 REMARK 500 THR B 163 -54.40 -129.95 REMARK 500 LYS B 249 13.11 58.82 REMARK 500 SER B 304 52.80 -100.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD2 REMARK 620 2 HOH A 325 O 91.3 REMARK 620 3 HOH A 326 O 87.6 96.9 REMARK 620 4 HOH A 425 O 165.9 102.7 89.2 REMARK 620 5 HOH A 524 O 83.2 89.1 169.1 98.3 REMARK 620 6 HOH A 544 O 77.9 169.2 81.5 88.0 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 200 OD2 REMARK 620 2 HOH B 352 O 81.4 REMARK 620 3 HOH B 353 O 90.3 171.5 REMARK 620 4 HOH B 547 O 88.1 83.3 94.5 REMARK 620 5 HOH B 548 O 96.5 98.8 84.1 175.1 REMARK 620 6 HOH B 549 O 170.8 93.1 94.8 83.9 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3TC1 A 1 315 PDB 3TC1 3TC1 1 315 DBREF 3TC1 B 1 315 PDB 3TC1 3TC1 1 315 SEQRES 1 A 315 MET GLN GLU LYS GLN LEU LYS ALA ILE GLN ASN LYS ILE SEQRES 2 A 315 ALA SER TRP ILE LYS GLU ILE GLU SER GLY PHE ILE ASP SEQRES 3 A 315 GLU LEU PHE SER LYS ILE GLY PRO SER LYS MET LEU ARG SEQRES 4 A 315 SER LYS LEU MET LEU ALA LEU LEU ASN GLU LYS THR ASP SEQRES 5 A 315 ALA ILE LEU LEU ASP LYS ALA LEU ASN LEU CYS THR ILE SEQRES 6 A 315 VAL GLU MET ILE GLN THR ALA SER LEU LEU HIS ASP ASP SEQRES 7 A 315 VAL ILE ASP LYS ALA THR MET ARG ARG LYS LEU PRO SER SEQRES 8 A 315 ILE ASN ALA LEU PHE GLY ASN PHE ASN ALA VAL MET LEU SEQRES 9 A 315 GLY ASP VAL PHE TYR SER LYS ALA PHE PHE GLU LEU SER SEQRES 10 A 315 LYS MET GLY GLU LEU ILE ALA GLN ALA LEU SER ASN ALA SEQRES 11 A 315 VAL LEU ARG LEU SER ARG GLY GLU ILE GLU ASP VAL PHE SEQRES 12 A 315 VAL GLY GLU CYS PHE ASN SER ASP LYS GLN LYS TYR TRP SEQRES 13 A 315 ARG ILE LEU GLU ASP LYS THR ALA HIS PHE ILE GLU ALA SEQRES 14 A 315 SER LEU LYS SER MET ALA ILE LEU LEU ASN LYS ASP ALA SEQRES 15 A 315 LYS ILE TYR ALA ASP PHE GLY LEU ASN PHE GLY MET ALA SEQRES 16 A 315 PHE GLN ILE ILE ASP ASP LEU LEU ASP ILE THR GLN ASP SEQRES 17 A 315 ALA LYS THR LEU GLY LYS PRO ASN PHE SER ASP PHE LYS SEQRES 18 A 315 GLU GLY LYS THR THR LEU PRO TYR LEU LEU LEU TYR GLU SEQRES 19 A 315 LYS LEU ASN GLN HIS ASP GLN GLY LEU LEU ILE SER TYR SEQRES 20 A 315 PHE LYS GLN ASP SER HIS GLU ILE ILE GLU TRP THR LYS SEQRES 21 A 315 GLU LYS PHE LYS GLN TYR GLY ILE ILE GLU GLU THR LEU SEQRES 22 A 315 LYS THR ALA GLN VAL TYR SER LYS LYS ALA LEU GLU ALA SEQRES 23 A 315 ILE LYS GLY GLU ASN ASN LEU ILE LEU GLU LYS LEU ALA SEQRES 24 A 315 GLN ASP VAL ILE SER ARG THR PHE LEU GLU HIS HIS HIS SEQRES 25 A 315 HIS HIS HIS SEQRES 1 B 315 MET GLN GLU LYS GLN LEU LYS ALA ILE GLN ASN LYS ILE SEQRES 2 B 315 ALA SER TRP ILE LYS GLU ILE GLU SER GLY PHE ILE ASP SEQRES 3 B 315 GLU LEU PHE SER LYS ILE GLY PRO SER LYS MET LEU ARG SEQRES 4 B 315 SER LYS LEU MET LEU ALA LEU LEU ASN GLU LYS THR ASP SEQRES 5 B 315 ALA ILE LEU LEU ASP LYS ALA LEU ASN LEU CYS THR ILE SEQRES 6 B 315 VAL GLU MET ILE GLN THR ALA SER LEU LEU HIS ASP ASP SEQRES 7 B 315 VAL ILE ASP LYS ALA THR MET ARG ARG LYS LEU PRO SER SEQRES 8 B 315 ILE ASN ALA LEU PHE GLY ASN PHE ASN ALA VAL MET LEU SEQRES 9 B 315 GLY ASP VAL PHE TYR SER LYS ALA PHE PHE GLU LEU SER SEQRES 10 B 315 LYS MET GLY GLU LEU ILE ALA GLN ALA LEU SER ASN ALA SEQRES 11 B 315 VAL LEU ARG LEU SER ARG GLY GLU ILE GLU ASP VAL PHE SEQRES 12 B 315 VAL GLY GLU CYS PHE ASN SER ASP LYS GLN LYS TYR TRP SEQRES 13 B 315 ARG ILE LEU GLU ASP LYS THR ALA HIS PHE ILE GLU ALA SEQRES 14 B 315 SER LEU LYS SER MET ALA ILE LEU LEU ASN LYS ASP ALA SEQRES 15 B 315 LYS ILE TYR ALA ASP PHE GLY LEU ASN PHE GLY MET ALA SEQRES 16 B 315 PHE GLN ILE ILE ASP ASP LEU LEU ASP ILE THR GLN ASP SEQRES 17 B 315 ALA LYS THR LEU GLY LYS PRO ASN PHE SER ASP PHE LYS SEQRES 18 B 315 GLU GLY LYS THR THR LEU PRO TYR LEU LEU LEU TYR GLU SEQRES 19 B 315 LYS LEU ASN GLN HIS ASP GLN GLY LEU LEU ILE SER TYR SEQRES 20 B 315 PHE LYS GLN ASP SER HIS GLU ILE ILE GLU TRP THR LYS SEQRES 21 B 315 GLU LYS PHE LYS GLN TYR GLY ILE ILE GLU GLU THR LEU SEQRES 22 B 315 LYS THR ALA GLN VAL TYR SER LYS LYS ALA LEU GLU ALA SEQRES 23 B 315 ILE LYS GLY GLU ASN ASN LEU ILE LEU GLU LYS LEU ALA SEQRES 24 B 315 GLN ASP VAL ILE SER ARG THR PHE LEU GLU HIS HIS HIS SEQRES 25 B 315 HIS HIS HIS HET MG A 500 1 HET MG B 501 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *537(H2 O) HELIX 1 1 GLN A 2 GLU A 19 1 18 HELIX 2 2 SER A 22 SER A 30 1 9 HELIX 3 3 MET A 37 ALA A 45 1 9 HELIX 4 4 ASP A 52 VAL A 79 1 28 HELIX 5 5 PHE A 99 SER A 117 1 19 HELIX 6 6 GLY A 120 GLY A 145 1 26 HELIX 7 7 ASP A 151 THR A 163 1 13 HELIX 8 8 THR A 163 LEU A 178 1 16 HELIX 9 9 ASP A 181 ASP A 204 1 24 HELIX 10 10 ASP A 219 GLY A 223 5 5 HELIX 11 11 THR A 226 GLU A 234 1 9 HELIX 12 12 ASN A 237 TYR A 247 1 11 HELIX 13 13 SER A 252 TYR A 266 1 15 HELIX 14 14 GLY A 267 ILE A 287 1 21 HELIX 15 15 ASN A 292 SER A 304 1 13 HELIX 16 16 GLN B 2 GLU B 19 1 18 HELIX 17 17 SER B 22 SER B 30 1 9 HELIX 18 18 MET B 37 ALA B 45 1 9 HELIX 19 19 ASP B 52 ASP B 81 1 30 HELIX 20 20 SER B 91 SER B 117 1 27 HELIX 21 21 GLY B 120 GLY B 145 1 26 HELIX 22 22 ASP B 151 THR B 163 1 13 HELIX 23 23 THR B 163 LEU B 178 1 16 HELIX 24 24 ASP B 181 THR B 206 1 26 HELIX 25 25 ASP B 219 GLY B 223 5 5 HELIX 26 26 THR B 226 GLU B 234 1 9 HELIX 27 27 ASN B 237 TYR B 247 1 11 HELIX 28 28 SER B 252 TYR B 266 1 15 HELIX 29 29 GLY B 267 ILE B 287 1 21 HELIX 30 30 ASN B 292 VAL B 302 1 11 SHEET 1 A 2 MET B 85 ARG B 86 0 SHEET 2 A 2 LEU B 89 PRO B 90 -1 O LEU B 89 N ARG B 86 LINK OD2 ASP A 200 MG MG A 500 1555 1555 2.38 LINK O HOH A 325 MG MG A 500 1555 1555 2.39 LINK O HOH A 326 MG MG A 500 1555 1555 2.34 LINK O HOH A 425 MG MG A 500 1555 1555 2.40 LINK MG MG A 500 O HOH A 524 1555 1555 2.41 LINK MG MG A 500 O HOH A 544 1555 1555 2.45 LINK OD2 ASP B 200 MG MG B 501 1555 1555 2.24 LINK O HOH B 352 MG MG B 501 1555 1555 2.51 LINK O HOH B 353 MG MG B 501 1555 1555 2.49 LINK MG MG B 501 O HOH B 547 1555 1555 2.26 LINK MG MG B 501 O HOH B 548 1555 1555 2.29 LINK MG MG B 501 O HOH B 549 1555 1555 2.36 SITE 1 AC1 6 ASP A 200 HOH A 325 HOH A 326 HOH A 425 SITE 2 AC1 6 HOH A 524 HOH A 544 SITE 1 AC2 6 ASP B 200 HOH B 352 HOH B 353 HOH B 547 SITE 2 AC2 6 HOH B 548 HOH B 549 CRYST1 109.330 109.330 103.410 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009147 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009670 0.00000