HEADER HYDROLASE INHIBITOR 08-AUG-11 3TC2 TITLE CRYSTAL STRUCTURE OF POTATO SERINE PROTEASE INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: KUNITZ-TYPE PROTEINASE INHIBITOR P1H5; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 21-221 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATOES; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 STRAIN: CV ELKANA KEYWDS BETA-TREFOIL FOLD, PROTEASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR E.M.MEULENBROEK,E.A.J.THOMASSEN,N.S.PANNU REVDAT 2 16-APR-14 3TC2 1 JRNL REVDAT 1 20-JUN-12 3TC2 0 JRNL AUTH E.M.MEULENBROEK,E.A.THOMASSEN,L.POUVREAU,J.P.ABRAHAMS, JRNL AUTH 2 H.GRUPPEN,N.S.PANNU JRNL TITL STRUCTURE OF A POST-TRANSLATIONALLY PROCESSED HETERODIMERIC JRNL TITL 2 DOUBLE-HEADED KUNITZ-TYPE SERINE PROTEASE INHIBITOR FROM JRNL TITL 3 POTATO. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 794 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751664 JRNL DOI 10.1107/S090744491201222X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.9 REMARK 3 NUMBER OF REFLECTIONS : 48229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 15.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4113 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 1.69000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.34000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4246 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5764 ; 2.316 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 7.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;31.645 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;13.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ; 9.893 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.199 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3218 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9030 68.6320 -27.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.0674 REMARK 3 T33: 0.0115 T12: 0.0177 REMARK 3 T13: 0.0326 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.0593 L22: 0.8512 REMARK 3 L33: 1.1126 L12: 0.1818 REMARK 3 L13: 0.1124 L23: 0.0425 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.0077 S13: -0.0243 REMARK 3 S21: 0.0294 S22: -0.0048 S23: -0.0031 REMARK 3 S31: 0.0172 S32: 0.0325 S33: 0.0737 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2320 41.8280 2.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.1550 REMARK 3 T33: 0.0318 T12: -0.0395 REMARK 3 T13: 0.0390 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.0160 L22: 1.1905 REMARK 3 L33: 1.9117 L12: 0.3278 REMARK 3 L13: 0.3698 L23: -0.0489 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: -0.3254 S13: 0.0626 REMARK 3 S21: 0.1968 S22: -0.0567 S23: 0.1254 REMARK 3 S31: 0.1196 S32: -0.1788 S33: -0.1627 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 187 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2300 46.5370 -18.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.0617 REMARK 3 T33: 0.0024 T12: 0.0010 REMARK 3 T13: 0.0136 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4311 L22: 1.0146 REMARK 3 L33: 1.2861 L12: 0.1810 REMARK 3 L13: -0.1319 L23: 0.1822 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.0102 S13: -0.0374 REMARK 3 S21: -0.0363 S22: 0.0183 S23: -0.0223 REMARK 3 S31: -0.0348 S32: -0.0095 S33: 0.0072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3TC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB067296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94644 REMARK 200 MONOCHROMATOR : SI(311) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 54.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 18.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 10% PEG 8000, 8% REMARK 280 ETHYLENE GLYCOL, 9 MM 1-S-OCTYL-BETA-D-THIOGLUCOSIDE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 THR A 149 REMARK 465 THR A 150 REMARK 465 SER A 151 REMARK 465 SER A 152 REMARK 465 ASP A 153 REMARK 465 LEU B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 THR B 149 REMARK 465 THR B 150 REMARK 465 SER B 151 REMARK 465 SER B 152 REMARK 465 ASP B 153 REMARK 465 ASP B 154 REMARK 465 GLN B 155 REMARK 465 LEU C 1 REMARK 465 PRO C 2 REMARK 465 SER C 3 REMARK 465 ASP C 4 REMARK 465 THR C 149 REMARK 465 THR C 150 REMARK 465 SER C 151 REMARK 465 SER C 152 REMARK 465 ASP C 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 138 OD2 ASP B 180 1.87 REMARK 500 N ASP A 154 O HOH A 327 2.04 REMARK 500 O ALA C 46 O HOH C 401 2.15 REMARK 500 OD1 ASP B 180 O HOH B 220 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 77 OE2 GLU C 15 1655 1.88 REMARK 500 N ASP B 4 O HOH C 247 1655 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 26 C SER A 26 O 0.121 REMARK 500 TRP A 130 CE2 TRP A 130 CD2 0.091 REMARK 500 LYS A 132 CD LYS A 132 CE -0.162 REMARK 500 PHE A 139 CE1 PHE A 139 CZ 0.131 REMARK 500 TYR A 141 CD1 TYR A 141 CE1 0.095 REMARK 500 VAL A 148 CB VAL A 148 CG1 -0.141 REMARK 500 SER B 21 CB SER B 21 OG -0.151 REMARK 500 TYR B 108 CG TYR B 108 CD2 0.205 REMARK 500 TYR B 108 CG TYR B 108 CD1 0.101 REMARK 500 TYR B 108 CE1 TYR B 108 CZ 0.215 REMARK 500 VAL B 163 CB VAL B 163 CG2 -0.131 REMARK 500 ARG C 54 CZ ARG C 54 NH1 0.078 REMARK 500 VAL C 66 CB VAL C 66 CG2 -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU A 85 CB - CG - CD1 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 127 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR B 108 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR B 108 CE1 - CZ - CE2 ANGL. DEV. = 10.2 DEGREES REMARK 500 TYR B 108 CZ - CE2 - CD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 180 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG C 54 CD - NE - CZ ANGL. DEV. = 20.1 DEGREES REMARK 500 ARG C 54 NE - CZ - NH1 ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG C 54 NE - CZ - NH2 ANGL. DEV. = -18.5 DEGREES REMARK 500 ASP C 127 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 57.77 34.18 REMARK 500 SER A 72 -6.76 -56.29 REMARK 500 HIS A 74 -69.46 58.75 REMARK 500 PHE A 75 -65.29 61.38 REMARK 500 GLN A 77 -60.05 85.85 REMARK 500 ALA A 90 74.20 -105.25 REMARK 500 GLN A 138 -80.12 -106.97 REMARK 500 PHE A 156 -62.35 -108.17 REMARK 500 PHE B 28 -168.83 -105.85 REMARK 500 ASN B 50 19.30 -141.04 REMARK 500 SER B 72 -23.76 105.70 REMARK 500 SER B 73 -76.50 -49.25 REMARK 500 HIS B 74 -176.91 -63.32 REMARK 500 GLN B 77 -11.50 64.15 REMARK 500 ALA B 90 76.58 -101.06 REMARK 500 GLN B 138 -124.39 -111.02 REMARK 500 GLN C 77 32.35 -98.90 REMARK 500 ALA C 90 70.86 -102.13 REMARK 500 GLN C 138 -92.54 -114.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 54 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 27 24.3 L L OUTSIDE RANGE REMARK 500 VAL A 148 22.2 L L OUTSIDE RANGE REMARK 500 PHE B 156 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 3TC2 A 1 187 UNP Q8S380 Q8S380_SOLTU 29 221 DBREF 3TC2 B 1 187 UNP Q8S380 Q8S380_SOLTU 29 221 DBREF 3TC2 C 1 187 UNP Q8S380 Q8S380_SOLTU 29 221 SEQADV 3TC2 A UNP Q8S380 THR 179 DELETION SEQADV 3TC2 A UNP Q8S380 MET 180 DELETION SEQADV 3TC2 A UNP Q8S380 THR 181 DELETION SEQADV 3TC2 A UNP Q8S380 LEU 182 DELETION SEQADV 3TC2 A UNP Q8S380 PRO 183 DELETION SEQADV 3TC2 A UNP Q8S380 PHE 184 DELETION SEQADV 3TC2 B UNP Q8S380 THR 179 DELETION SEQADV 3TC2 B UNP Q8S380 MET 180 DELETION SEQADV 3TC2 B UNP Q8S380 THR 181 DELETION SEQADV 3TC2 B UNP Q8S380 LEU 182 DELETION SEQADV 3TC2 B UNP Q8S380 PRO 183 DELETION SEQADV 3TC2 B UNP Q8S380 PHE 184 DELETION SEQADV 3TC2 C UNP Q8S380 THR 179 DELETION SEQADV 3TC2 C UNP Q8S380 MET 180 DELETION SEQADV 3TC2 C UNP Q8S380 THR 181 DELETION SEQADV 3TC2 C UNP Q8S380 LEU 182 DELETION SEQADV 3TC2 C UNP Q8S380 PRO 183 DELETION SEQADV 3TC2 C UNP Q8S380 PHE 184 DELETION SEQRES 1 A 187 LEU PRO SER ASP ALA THR PRO VAL LEU ASP VAL THR GLY SEQRES 2 A 187 LYS GLU LEU ASP PRO ARG LEU SER TYR ARG ILE ILE SER SEQRES 3 A 187 THR PHE TRP GLY ALA LEU GLY GLY ASP VAL TYR LEU GLY SEQRES 4 A 187 LYS SER PRO ASN SER ASP ALA PRO CYS ALA ASN GLY VAL SEQRES 5 A 187 PHE ARG TYR ASN SER ASP VAL GLY PRO SER GLY THR PRO SEQRES 6 A 187 VAL ARG PHE ILE GLY SER SER SER HIS PHE GLY GLN GLY SEQRES 7 A 187 ILE PHE GLU ASP GLU LEU LEU ASN ILE GLN PHE ALA ILE SEQRES 8 A 187 SER THR SER LYS MET CYS VAL SER TYR THR ILE TRP LYS SEQRES 9 A 187 VAL GLY ASP TYR ASP ALA SER LEU GLY THR MET LEU LEU SEQRES 10 A 187 GLU THR GLY GLY THR ILE GLY GLN ALA ASP SER SER TRP SEQRES 11 A 187 PHE LYS ILE VAL LYS SER SER GLN PHE GLY TYR ASN LEU SEQRES 12 A 187 LEU TYR CYS PRO VAL THR THR SER SER ASP ASP GLN PHE SEQRES 13 A 187 CYS LEU LYS VAL GLY VAL VAL HIS GLN ASN GLY LYS ARG SEQRES 14 A 187 ARG LEU ALA LEU VAL LYS ASP ASN PRO LEU ASP VAL SER SEQRES 15 A 187 PHE LYS GLN VAL GLN SEQRES 1 B 187 LEU PRO SER ASP ALA THR PRO VAL LEU ASP VAL THR GLY SEQRES 2 B 187 LYS GLU LEU ASP PRO ARG LEU SER TYR ARG ILE ILE SER SEQRES 3 B 187 THR PHE TRP GLY ALA LEU GLY GLY ASP VAL TYR LEU GLY SEQRES 4 B 187 LYS SER PRO ASN SER ASP ALA PRO CYS ALA ASN GLY VAL SEQRES 5 B 187 PHE ARG TYR ASN SER ASP VAL GLY PRO SER GLY THR PRO SEQRES 6 B 187 VAL ARG PHE ILE GLY SER SER SER HIS PHE GLY GLN GLY SEQRES 7 B 187 ILE PHE GLU ASP GLU LEU LEU ASN ILE GLN PHE ALA ILE SEQRES 8 B 187 SER THR SER LYS MET CYS VAL SER TYR THR ILE TRP LYS SEQRES 9 B 187 VAL GLY ASP TYR ASP ALA SER LEU GLY THR MET LEU LEU SEQRES 10 B 187 GLU THR GLY GLY THR ILE GLY GLN ALA ASP SER SER TRP SEQRES 11 B 187 PHE LYS ILE VAL LYS SER SER GLN PHE GLY TYR ASN LEU SEQRES 12 B 187 LEU TYR CYS PRO VAL THR THR SER SER ASP ASP GLN PHE SEQRES 13 B 187 CYS LEU LYS VAL GLY VAL VAL HIS GLN ASN GLY LYS ARG SEQRES 14 B 187 ARG LEU ALA LEU VAL LYS ASP ASN PRO LEU ASP VAL SER SEQRES 15 B 187 PHE LYS GLN VAL GLN SEQRES 1 C 187 LEU PRO SER ASP ALA THR PRO VAL LEU ASP VAL THR GLY SEQRES 2 C 187 LYS GLU LEU ASP PRO ARG LEU SER TYR ARG ILE ILE SER SEQRES 3 C 187 THR PHE TRP GLY ALA LEU GLY GLY ASP VAL TYR LEU GLY SEQRES 4 C 187 LYS SER PRO ASN SER ASP ALA PRO CYS ALA ASN GLY VAL SEQRES 5 C 187 PHE ARG TYR ASN SER ASP VAL GLY PRO SER GLY THR PRO SEQRES 6 C 187 VAL ARG PHE ILE GLY SER SER SER HIS PHE GLY GLN GLY SEQRES 7 C 187 ILE PHE GLU ASP GLU LEU LEU ASN ILE GLN PHE ALA ILE SEQRES 8 C 187 SER THR SER LYS MET CYS VAL SER TYR THR ILE TRP LYS SEQRES 9 C 187 VAL GLY ASP TYR ASP ALA SER LEU GLY THR MET LEU LEU SEQRES 10 C 187 GLU THR GLY GLY THR ILE GLY GLN ALA ASP SER SER TRP SEQRES 11 C 187 PHE LYS ILE VAL LYS SER SER GLN PHE GLY TYR ASN LEU SEQRES 12 C 187 LEU TYR CYS PRO VAL THR THR SER SER ASP ASP GLN PHE SEQRES 13 C 187 CYS LEU LYS VAL GLY VAL VAL HIS GLN ASN GLY LYS ARG SEQRES 14 C 187 ARG LEU ALA LEU VAL LYS ASP ASN PRO LEU ASP VAL SER SEQRES 15 C 187 PHE LYS GLN VAL GLN FORMUL 4 HOH *501(H2 O) HELIX 1 1 TRP A 29 GLY A 33 5 5 HELIX 2 2 SER A 94 THR A 101 5 8 HELIX 3 3 TRP B 29 GLY B 33 5 5 HELIX 4 4 SER B 94 THR B 101 5 8 HELIX 5 5 TRP C 29 GLY C 33 5 5 SHEET 1 A 2 TYR A 22 ILE A 25 0 SHEET 2 A 2 SER A 182 GLN A 185 -1 O LYS A 184 N ARG A 23 SHEET 1 B 6 VAL A 36 GLY A 39 0 SHEET 2 B 6 GLY A 51 ARG A 54 -1 O GLY A 51 N GLY A 39 SHEET 3 B 6 LYS A 168 VAL A 174 -1 O LEU A 171 N VAL A 52 SHEET 4 B 6 LEU A 158 GLN A 165 -1 N GLY A 161 O ALA A 172 SHEET 5 B 6 TYR A 141 TYR A 145 -1 N TYR A 145 O LEU A 158 SHEET 6 B 6 PHE A 131 LYS A 135 -1 N LYS A 132 O LEU A 144 SHEET 1 C 2 VAL A 66 GLY A 70 0 SHEET 2 C 2 LEU A 85 PHE A 89 -1 O ASN A 86 N ILE A 69 SHEET 1 D 2 TRP A 103 TYR A 108 0 SHEET 2 D 2 MET A 115 THR A 119 -1 O LEU A 116 N GLY A 106 SHEET 1 E 2 TYR B 22 SER B 26 0 SHEET 2 E 2 VAL B 181 GLN B 185 -1 O LYS B 184 N ARG B 23 SHEET 1 F 6 VAL B 36 GLY B 39 0 SHEET 2 F 6 GLY B 51 ARG B 54 -1 O PHE B 53 N TYR B 37 SHEET 3 F 6 LYS B 168 VAL B 174 -1 O LEU B 171 N VAL B 52 SHEET 4 F 6 LEU B 158 GLN B 165 -1 N GLN B 165 O LYS B 168 SHEET 5 F 6 TYR B 141 CYS B 146 -1 N TYR B 145 O LEU B 158 SHEET 6 F 6 TRP B 130 LYS B 135 -1 N VAL B 134 O ASN B 142 SHEET 1 G 2 VAL B 66 GLY B 70 0 SHEET 2 G 2 LEU B 85 PHE B 89 -1 O GLN B 88 N ARG B 67 SHEET 1 H 2 TRP B 103 ASP B 109 0 SHEET 2 H 2 THR B 114 THR B 119 -1 O LEU B 116 N GLY B 106 SHEET 1 I 2 TYR C 22 SER C 26 0 SHEET 2 I 2 VAL C 181 GLN C 185 -1 O LYS C 184 N ARG C 23 SHEET 1 J 6 VAL C 36 GLY C 39 0 SHEET 2 J 6 GLY C 51 ARG C 54 -1 O PHE C 53 N TYR C 37 SHEET 3 J 6 LYS C 168 VAL C 174 -1 O ARG C 169 N ARG C 54 SHEET 4 J 6 LEU C 158 GLN C 165 -1 N GLY C 161 O ALA C 172 SHEET 5 J 6 TYR C 141 TYR C 145 -1 N TYR C 145 O LEU C 158 SHEET 6 J 6 PHE C 131 LYS C 135 -1 N VAL C 134 O ASN C 142 SHEET 1 K 2 VAL C 66 GLY C 70 0 SHEET 2 K 2 LEU C 85 PHE C 89 -1 O GLN C 88 N ARG C 67 SHEET 1 L 2 TRP C 103 ASP C 109 0 SHEET 2 L 2 THR C 114 THR C 119 -1 O LEU C 116 N GLY C 106 SSBOND 1 CYS A 48 CYS A 97 1555 1555 2.07 SSBOND 2 CYS A 146 CYS A 157 1555 1555 2.16 SSBOND 3 CYS B 48 CYS B 97 1555 1555 2.08 SSBOND 4 CYS B 146 CYS B 157 1555 1555 2.12 SSBOND 5 CYS C 48 CYS C 97 1555 1555 2.13 SSBOND 6 CYS C 146 CYS C 157 1555 1555 2.13 CISPEP 1 GLY C 60 PRO C 61 0 -8.13 CRYST1 54.822 93.920 55.442 90.00 100.69 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018241 0.000000 0.003443 0.00000 SCALE2 0.000000 0.010647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018355 0.00000