data_3TD7 # _entry.id 3TD7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3TD7 RCSB RCSB067337 WWPDB D_1000067337 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GWN 'Truncated version of this protein, includes only the Erv sulfhydryl oxidase domain' unspecified PDB 3P0K 'Homolog from baculovirus' unspecified PDB 3GWL 'Homolog from African Swine Fever Virus' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3TD7 _pdbx_database_status.recvd_initial_deposition_date 2011-08-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hakim, M.' 1 'Fass, D.' 2 # _citation.id primary _citation.title 'Exploring ORFan domains in giant viruses: structure of mimivirus sulfhydryl oxidase R596.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e50649 _citation.page_last e50649 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23209798 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0050649 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hakim, M.' 1 primary 'Ezerina, D.' 2 primary 'Alon, A.' 3 primary 'Vonshak, O.' 4 primary 'Fass, D.' 5 # _cell.entry_id 3TD7 _cell.length_a 91.306 _cell.length_b 91.306 _cell.length_c 200.790 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TD7 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FAD-linked sulfhydryl oxidase R596' 34202.867 1 1.8.3.2 'C23A, C201A, C229A, C266A' ? ? 2 non-polymer syn 'FLAVIN-ADENINE DINUCLEOTIDE' 785.550 1 ? ? ? ? 3 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSLSKQVVPTHRVEIAPNSESTAKMDHSNYQHNGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDV LPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGKPVPTVKGCV TPLDHKAFSFKKLYYMDAPIVSLDKVENFVRIARMRGISDKYFAFLELATVLNGDFNELKKQSSWEYRNKYAQKKIRHMR ENAIPSIEEQGYWKGTPTIDELKLLLFLASNLNRTEVNDAINNVERLESTHYIEN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSLSKQVVPTHRVEIAPNSESTAKMDHSNYQHNGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDV LPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGKPVPTVKGCV TPLDHKAFSFKKLYYMDAPIVSLDKVENFVRIARMRGISDKYFAFLELATVLNGDFNELKKQSSWEYRNKYAQKKIRHMR ENAIPSIEEQGYWKGTPTIDELKLLLFLASNLNRTEVNDAINNVERLESTHYIEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 LEU n 1 7 SER n 1 8 LYS n 1 9 GLN n 1 10 VAL n 1 11 VAL n 1 12 PRO n 1 13 THR n 1 14 HIS n 1 15 ARG n 1 16 VAL n 1 17 GLU n 1 18 ILE n 1 19 ALA n 1 20 PRO n 1 21 ASN n 1 22 SER n 1 23 GLU n 1 24 SER n 1 25 THR n 1 26 ALA n 1 27 LYS n 1 28 MET n 1 29 ASP n 1 30 HIS n 1 31 SER n 1 32 ASN n 1 33 TYR n 1 34 GLN n 1 35 HIS n 1 36 ASN n 1 37 GLY n 1 38 LEU n 1 39 ILE n 1 40 THR n 1 41 LYS n 1 42 ILE n 1 43 TRP n 1 44 GLY n 1 45 THR n 1 46 ALA n 1 47 GLY n 1 48 TRP n 1 49 THR n 1 50 PHE n 1 51 ASN n 1 52 HIS n 1 53 ALA n 1 54 VAL n 1 55 THR n 1 56 PHE n 1 57 GLY n 1 58 TYR n 1 59 PRO n 1 60 LEU n 1 61 ASN n 1 62 PRO n 1 63 THR n 1 64 SER n 1 65 ASP n 1 66 ASP n 1 67 LYS n 1 68 ARG n 1 69 ARG n 1 70 TYR n 1 71 LYS n 1 72 ASN n 1 73 TYR n 1 74 PHE n 1 75 ILE n 1 76 SER n 1 77 LEU n 1 78 GLY n 1 79 ASP n 1 80 VAL n 1 81 LEU n 1 82 PRO n 1 83 CYS n 1 84 ARG n 1 85 LEU n 1 86 CYS n 1 87 ARG n 1 88 GLU n 1 89 SER n 1 90 TYR n 1 91 LYS n 1 92 LYS n 1 93 PHE n 1 94 ILE n 1 95 THR n 1 96 THR n 1 97 GLY n 1 98 LYS n 1 99 THR n 1 100 ALA n 1 101 LEU n 1 102 THR n 1 103 ASN n 1 104 GLU n 1 105 VAL n 1 106 LEU n 1 107 ARG n 1 108 ASN n 1 109 ARG n 1 110 HIS n 1 111 THR n 1 112 LEU n 1 113 THR n 1 114 LYS n 1 115 TRP n 1 116 PHE n 1 117 TYR n 1 118 ASP n 1 119 VAL n 1 120 HIS n 1 121 ASN n 1 122 ALA n 1 123 VAL n 1 124 ASN n 1 125 ASN n 1 126 LYS n 1 127 LEU n 1 128 GLU n 1 129 VAL n 1 130 ASP n 1 131 TYR n 1 132 GLY n 1 133 LEU n 1 134 SER n 1 135 TYR n 1 136 GLU n 1 137 ASP n 1 138 VAL n 1 139 VAL n 1 140 ASN n 1 141 LYS n 1 142 TYR n 1 143 GLU n 1 144 SER n 1 145 PHE n 1 146 ARG n 1 147 ALA n 1 148 LYS n 1 149 CYS n 1 150 GLY n 1 151 LYS n 1 152 PRO n 1 153 VAL n 1 154 PRO n 1 155 THR n 1 156 VAL n 1 157 LYS n 1 158 GLY n 1 159 CYS n 1 160 VAL n 1 161 THR n 1 162 PRO n 1 163 LEU n 1 164 ASP n 1 165 HIS n 1 166 LYS n 1 167 ALA n 1 168 PHE n 1 169 SER n 1 170 PHE n 1 171 LYS n 1 172 LYS n 1 173 LEU n 1 174 TYR n 1 175 TYR n 1 176 MET n 1 177 ASP n 1 178 ALA n 1 179 PRO n 1 180 ILE n 1 181 VAL n 1 182 SER n 1 183 LEU n 1 184 ASP n 1 185 LYS n 1 186 VAL n 1 187 GLU n 1 188 ASN n 1 189 PHE n 1 190 VAL n 1 191 ARG n 1 192 ILE n 1 193 ALA n 1 194 ARG n 1 195 MET n 1 196 ARG n 1 197 GLY n 1 198 ILE n 1 199 SER n 1 200 ASP n 1 201 LYS n 1 202 TYR n 1 203 PHE n 1 204 ALA n 1 205 PHE n 1 206 LEU n 1 207 GLU n 1 208 LEU n 1 209 ALA n 1 210 THR n 1 211 VAL n 1 212 LEU n 1 213 ASN n 1 214 GLY n 1 215 ASP n 1 216 PHE n 1 217 ASN n 1 218 GLU n 1 219 LEU n 1 220 LYS n 1 221 LYS n 1 222 GLN n 1 223 SER n 1 224 SER n 1 225 TRP n 1 226 GLU n 1 227 TYR n 1 228 ARG n 1 229 ASN n 1 230 LYS n 1 231 TYR n 1 232 ALA n 1 233 GLN n 1 234 LYS n 1 235 LYS n 1 236 ILE n 1 237 ARG n 1 238 HIS n 1 239 MET n 1 240 ARG n 1 241 GLU n 1 242 ASN n 1 243 ALA n 1 244 ILE n 1 245 PRO n 1 246 SER n 1 247 ILE n 1 248 GLU n 1 249 GLU n 1 250 GLN n 1 251 GLY n 1 252 TYR n 1 253 TRP n 1 254 LYS n 1 255 GLY n 1 256 THR n 1 257 PRO n 1 258 THR n 1 259 ILE n 1 260 ASP n 1 261 GLU n 1 262 LEU n 1 263 LYS n 1 264 LEU n 1 265 LEU n 1 266 LEU n 1 267 PHE n 1 268 LEU n 1 269 ALA n 1 270 SER n 1 271 ASN n 1 272 LEU n 1 273 ASN n 1 274 ARG n 1 275 THR n 1 276 GLU n 1 277 VAL n 1 278 ASN n 1 279 ASP n 1 280 ALA n 1 281 ILE n 1 282 ASN n 1 283 ASN n 1 284 VAL n 1 285 GLU n 1 286 ARG n 1 287 LEU n 1 288 GLU n 1 289 SER n 1 290 THR n 1 291 HIS n 1 292 TYR n 1 293 ILE n 1 294 GLU n 1 295 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name APMV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MIMI_R596, R596' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acanthamoeba polyphaga mimivirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 212035 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YR596_MIMIV _struct_ref.pdbx_db_accession Q5UP54 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSLSKQVVPTHRVEIAPNSESTCKMDHSNYQHNGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPC RLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGKPVPTVKGCVTPL DHKAFSFKKLYYMDAPIVSLDKVENFVRIARMRGISDKYFCFLELATVLNGDFNELKKQSSWEYRNKYCQKKIRHMRENA IPSIEEQGYWKGTPTIDELKLLLFLCSNLNRTEVNDAINNVERLESTHYIEN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TD7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 295 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5UP54 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 292 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 292 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TD7 GLY A 1 ? UNP Q5UP54 ? ? 'EXPRESSION TAG' -2 1 1 3TD7 SER A 2 ? UNP Q5UP54 ? ? 'EXPRESSION TAG' -1 2 1 3TD7 HIS A 3 ? UNP Q5UP54 ? ? 'EXPRESSION TAG' 0 3 1 3TD7 ALA A 26 ? UNP Q5UP54 CYS 23 'ENGINEERED MUTATION' 23 4 1 3TD7 ALA A 204 ? UNP Q5UP54 CYS 201 'ENGINEERED MUTATION' 201 5 1 3TD7 ALA A 232 ? UNP Q5UP54 CYS 229 'ENGINEERED MUTATION' 229 6 1 3TD7 ALA A 269 ? UNP Q5UP54 CYS 266 'ENGINEERED MUTATION' 266 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FAD non-polymer . 'FLAVIN-ADENINE DINUCLEOTIDE' ? 'C27 H33 N9 O15 P2' 785.550 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3TD7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 3.53 65.18 ? ? ? 2 ? ? ? ? ? ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;0.1 M HEPES, 200 mM magnesium chloride, 200 mM lithium sulfate, 5% (v/v) 2-methyl-2,4-pentanediol (MPD), and 15-20% (w/v) PEG 1500, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.0 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'Pilatus 6M' _diffrn_detector.pdbx_collection_date 2011-05-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(311)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9766 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9766 # _reflns.entry_id 3TD7 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 45 _reflns.d_resolution_high 2.21 _reflns.number_obs 25063 _reflns.number_all 25626 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.1 _reflns.pdbx_netI_over_sigmaI 18.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 19.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.21 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.743 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 19.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3431 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3TD7 _refine.ls_number_reflns_obs 23329 _refine.ls_number_reflns_all 25047 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45 _refine.ls_d_res_high 2.21 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1718 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2085 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 2260 _refine_hist.d_res_high 2.21 _refine_hist.d_res_low 45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_angle_deg 1.07852 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d 0.006669 ? ? ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 3TD7 _struct.title 'Crysal structure of the mimivirus sulfhydryl oxidase R596' _struct.pdbx_descriptor 'FAD-linked sulfhydryl oxidase R596 (E.C.1.8.3.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TD7 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'four helix-bundle, ORFan domain, Oxidase, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 39 ? GLY A 57 ? ILE A 36 GLY A 54 1 ? 19 HELX_P HELX_P2 2 THR A 63 ? LEU A 81 ? THR A 60 LEU A 78 1 ? 19 HELX_P HELX_P3 3 CYS A 83 ? ILE A 94 ? CYS A 80 ILE A 91 1 ? 12 HELX_P HELX_P4 4 THR A 95 ? ALA A 100 ? THR A 92 ALA A 97 5 ? 6 HELX_P HELX_P5 5 GLU A 104 ? ARG A 107 ? GLU A 101 ARG A 104 5 ? 4 HELX_P HELX_P6 6 ASN A 108 ? GLU A 128 ? ASN A 105 GLU A 125 1 ? 21 HELX_P HELX_P7 7 SER A 134 ? SER A 144 ? SER A 131 SER A 141 1 ? 11 HELX_P HELX_P8 8 PRO A 162 ? TYR A 175 ? PRO A 159 TYR A 172 1 ? 14 HELX_P HELX_P9 9 SER A 182 ? GLU A 187 ? SER A 179 GLU A 184 1 ? 6 HELX_P HELX_P10 10 PHE A 189 ? ARG A 196 ? PHE A 186 ARG A 193 1 ? 8 HELX_P HELX_P11 11 SER A 199 ? TYR A 202 ? SER A 196 TYR A 199 5 ? 4 HELX_P HELX_P12 12 PHE A 203 ? LEU A 212 ? PHE A 200 LEU A 209 1 ? 10 HELX_P HELX_P13 13 ASP A 215 ? LYS A 220 ? ASP A 212 LYS A 217 1 ? 6 HELX_P HELX_P14 14 SER A 223 ? ASN A 242 ? SER A 220 ASN A 239 1 ? 20 HELX_P HELX_P15 15 THR A 258 ? LEU A 266 ? THR A 255 LEU A 263 1 ? 9 HELX_P HELX_P16 16 ASN A 273 ? GLU A 294 ? ASN A 270 GLU A 291 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 83 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 86 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 80 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 83 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.359 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 29 _struct_site.details 'BINDING SITE FOR RESIDUE FAD A 334' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 29 THR A 40 ? THR A 37 . ? 1_555 ? 2 AC1 29 TRP A 43 ? TRP A 40 . ? 1_555 ? 3 AC1 29 GLY A 44 ? GLY A 41 . ? 1_555 ? 4 AC1 29 THR A 45 ? THR A 42 . ? 1_555 ? 5 AC1 29 GLY A 47 ? GLY A 44 . ? 1_555 ? 6 AC1 29 TRP A 48 ? TRP A 45 . ? 1_555 ? 7 AC1 29 HIS A 52 ? HIS A 49 . ? 1_555 ? 8 AC1 29 CYS A 86 ? CYS A 83 . ? 1_555 ? 9 AC1 29 TYR A 117 ? TYR A 114 . ? 1_555 ? 10 AC1 29 HIS A 120 ? HIS A 117 . ? 1_555 ? 11 AC1 29 ASN A 121 ? ASN A 118 . ? 1_555 ? 12 AC1 29 VAL A 123 ? VAL A 120 . ? 1_555 ? 13 AC1 29 ASN A 124 ? ASN A 121 . ? 1_555 ? 14 AC1 29 LYS A 126 ? LYS A 123 . ? 1_555 ? 15 AC1 29 LEU A 127 ? LEU A 124 . ? 1_555 ? 16 AC1 29 TYR A 131 ? TYR A 128 . ? 1_555 ? 17 AC1 29 LEU A 133 ? LEU A 130 . ? 1_555 ? 18 AC1 29 VAL A 138 ? VAL A 135 . ? 1_555 ? 19 AC1 29 LYS A 141 ? LYS A 138 . ? 1_555 ? 20 AC1 29 ASP A 177 ? ASP A 174 . ? 1_555 ? 21 AC1 29 ARG A 240 ? ARG A 237 . ? 1_555 ? 22 AC1 29 HOH C . ? HOH A 296 . ? 1_555 ? 23 AC1 29 HOH C . ? HOH A 299 . ? 1_555 ? 24 AC1 29 HOH C . ? HOH A 300 . ? 1_555 ? 25 AC1 29 HOH C . ? HOH A 332 . ? 1_555 ? 26 AC1 29 HOH C . ? HOH A 336 . ? 1_555 ? 27 AC1 29 HOH C . ? HOH A 337 . ? 1_555 ? 28 AC1 29 HOH C . ? HOH A 344 . ? 1_555 ? 29 AC1 29 HOH C . ? HOH A 369 . ? 1_555 ? # _database_PDB_matrix.entry_id 3TD7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3TD7 _atom_sites.fract_transf_matrix[1][1] 0.010952 _atom_sites.fract_transf_matrix[1][2] 0.006323 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012646 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004980 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 SER 5 2 ? ? ? A . n A 1 6 LEU 6 3 ? ? ? A . n A 1 7 SER 7 4 ? ? ? A . n A 1 8 LYS 8 5 ? ? ? A . n A 1 9 GLN 9 6 ? ? ? A . n A 1 10 VAL 10 7 ? ? ? A . n A 1 11 VAL 11 8 ? ? ? A . n A 1 12 PRO 12 9 ? ? ? A . n A 1 13 THR 13 10 ? ? ? A . n A 1 14 HIS 14 11 ? ? ? A . n A 1 15 ARG 15 12 ? ? ? A . n A 1 16 VAL 16 13 ? ? ? A . n A 1 17 GLU 17 14 ? ? ? A . n A 1 18 ILE 18 15 ? ? ? A . n A 1 19 ALA 19 16 ? ? ? A . n A 1 20 PRO 20 17 ? ? ? A . n A 1 21 ASN 21 18 ? ? ? A . n A 1 22 SER 22 19 ? ? ? A . n A 1 23 GLU 23 20 ? ? ? A . n A 1 24 SER 24 21 ? ? ? A . n A 1 25 THR 25 22 ? ? ? A . n A 1 26 ALA 26 23 ? ? ? A . n A 1 27 LYS 27 24 ? ? ? A . n A 1 28 MET 28 25 ? ? ? A . n A 1 29 ASP 29 26 ? ? ? A . n A 1 30 HIS 30 27 ? ? ? A . n A 1 31 SER 31 28 ? ? ? A . n A 1 32 ASN 32 29 ? ? ? A . n A 1 33 TYR 33 30 ? ? ? A . n A 1 34 GLN 34 31 ? ? ? A . n A 1 35 HIS 35 32 32 HIS ALA A . n A 1 36 ASN 36 33 33 ASN ASN A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 ILE 39 36 36 ILE ILE A . n A 1 40 THR 40 37 37 THR THR A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 ILE 42 39 39 ILE ILE A . n A 1 43 TRP 43 40 40 TRP TRP A . n A 1 44 GLY 44 41 41 GLY GLY A . n A 1 45 THR 45 42 42 THR THR A . n A 1 46 ALA 46 43 43 ALA ALA A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 TRP 48 45 45 TRP TRP A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 PHE 50 47 47 PHE PHE A . n A 1 51 ASN 51 48 48 ASN ASN A . n A 1 52 HIS 52 49 49 HIS HIS A . n A 1 53 ALA 53 50 50 ALA ALA A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 THR 55 52 52 THR THR A . n A 1 56 PHE 56 53 53 PHE PHE A . n A 1 57 GLY 57 54 54 GLY GLY A . n A 1 58 TYR 58 55 55 TYR TYR A . n A 1 59 PRO 59 56 56 PRO PRO A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 ASN 61 58 58 ASN ASN A . n A 1 62 PRO 62 59 59 PRO PRO A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 SER 64 61 61 SER SER A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 LYS 67 64 64 LYS LYS A . n A 1 68 ARG 68 65 65 ARG ARG A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 TYR 70 67 67 TYR TYR A . n A 1 71 LYS 71 68 68 LYS LYS A . n A 1 72 ASN 72 69 69 ASN ASN A . n A 1 73 TYR 73 70 70 TYR TYR A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 ILE 75 72 72 ILE ILE A . n A 1 76 SER 76 73 73 SER SER A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 LEU 81 78 78 LEU LEU A . n A 1 82 PRO 82 79 79 PRO PRO A . n A 1 83 CYS 83 80 80 CYS CYS A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 CYS 86 83 83 CYS CYS A . n A 1 87 ARG 87 84 84 ARG ARG A . n A 1 88 GLU 88 85 85 GLU GLU A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 TYR 90 87 87 TYR TYR A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 LYS 92 89 89 LYS LYS A . n A 1 93 PHE 93 90 90 PHE PHE A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 THR 95 92 92 THR THR A . n A 1 96 THR 96 93 93 THR THR A . n A 1 97 GLY 97 94 94 GLY GLY A . n A 1 98 LYS 98 95 95 LYS LYS A . n A 1 99 THR 99 96 96 THR THR A . n A 1 100 ALA 100 97 97 ALA ALA A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 THR 102 99 99 THR THR A . n A 1 103 ASN 103 100 100 ASN ASN A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 VAL 105 102 102 VAL VAL A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 ARG 107 104 104 ARG ARG A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 ARG 109 106 106 ARG ARG A . n A 1 110 HIS 110 107 107 HIS HIS A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 LYS 114 111 111 LYS LYS A . n A 1 115 TRP 115 112 112 TRP TRP A . n A 1 116 PHE 116 113 113 PHE PHE A . n A 1 117 TYR 117 114 114 TYR TYR A . n A 1 118 ASP 118 115 115 ASP ASP A . n A 1 119 VAL 119 116 116 VAL VAL A . n A 1 120 HIS 120 117 117 HIS HIS A . n A 1 121 ASN 121 118 118 ASN ASN A . n A 1 122 ALA 122 119 119 ALA ALA A . n A 1 123 VAL 123 120 120 VAL VAL A . n A 1 124 ASN 124 121 121 ASN ASN A . n A 1 125 ASN 125 122 122 ASN ASN A . n A 1 126 LYS 126 123 123 LYS LYS A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 GLU 128 125 125 GLU GLU A . n A 1 129 VAL 129 126 126 VAL VAL A . n A 1 130 ASP 130 127 127 ASP ASP A . n A 1 131 TYR 131 128 128 TYR TYR A . n A 1 132 GLY 132 129 129 GLY GLY A . n A 1 133 LEU 133 130 130 LEU LEU A . n A 1 134 SER 134 131 131 SER SER A . n A 1 135 TYR 135 132 132 TYR TYR A . n A 1 136 GLU 136 133 133 GLU GLU A . n A 1 137 ASP 137 134 134 ASP ASP A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 VAL 139 136 136 VAL VAL A . n A 1 140 ASN 140 137 137 ASN ASN A . n A 1 141 LYS 141 138 138 LYS LYS A . n A 1 142 TYR 142 139 139 TYR TYR A . n A 1 143 GLU 143 140 140 GLU GLU A . n A 1 144 SER 144 141 141 SER SER A . n A 1 145 PHE 145 142 142 PHE PHE A . n A 1 146 ARG 146 143 143 ARG ARG A . n A 1 147 ALA 147 144 144 ALA ALA A . n A 1 148 LYS 148 145 145 LYS LYS A . n A 1 149 CYS 149 146 146 CYS CYS A . n A 1 150 GLY 150 147 147 GLY GLY A . n A 1 151 LYS 151 148 148 LYS ALA A . n A 1 152 PRO 152 149 ? ? ? A . n A 1 153 VAL 153 150 ? ? ? A . n A 1 154 PRO 154 151 ? ? ? A . n A 1 155 THR 155 152 ? ? ? A . n A 1 156 VAL 156 153 ? ? ? A . n A 1 157 LYS 157 154 ? ? ? A . n A 1 158 GLY 158 155 ? ? ? A . n A 1 159 CYS 159 156 ? ? ? A . n A 1 160 VAL 160 157 157 VAL VAL A . n A 1 161 THR 161 158 158 THR THR A . n A 1 162 PRO 162 159 159 PRO PRO A . n A 1 163 LEU 163 160 160 LEU LEU A . n A 1 164 ASP 164 161 161 ASP ASP A . n A 1 165 HIS 165 162 162 HIS HIS A . n A 1 166 LYS 166 163 163 LYS LYS A . n A 1 167 ALA 167 164 164 ALA ALA A . n A 1 168 PHE 168 165 165 PHE PHE A . n A 1 169 SER 169 166 166 SER SER A . n A 1 170 PHE 170 167 167 PHE PHE A . n A 1 171 LYS 171 168 168 LYS LYS A . n A 1 172 LYS 172 169 169 LYS LYS A . n A 1 173 LEU 173 170 170 LEU LEU A . n A 1 174 TYR 174 171 171 TYR TYR A . n A 1 175 TYR 175 172 172 TYR TYR A . n A 1 176 MET 176 173 173 MET MET A . n A 1 177 ASP 177 174 174 ASP ASP A . n A 1 178 ALA 178 175 175 ALA ALA A . n A 1 179 PRO 179 176 176 PRO PRO A . n A 1 180 ILE 180 177 177 ILE ILE A . n A 1 181 VAL 181 178 178 VAL VAL A . n A 1 182 SER 182 179 179 SER SER A . n A 1 183 LEU 183 180 180 LEU LEU A . n A 1 184 ASP 184 181 181 ASP ASP A . n A 1 185 LYS 185 182 182 LYS LYS A . n A 1 186 VAL 186 183 183 VAL VAL A . n A 1 187 GLU 187 184 184 GLU GLU A . n A 1 188 ASN 188 185 185 ASN ASN A . n A 1 189 PHE 189 186 186 PHE PHE A . n A 1 190 VAL 190 187 187 VAL VAL A . n A 1 191 ARG 191 188 188 ARG ARG A . n A 1 192 ILE 192 189 189 ILE ILE A . n A 1 193 ALA 193 190 190 ALA ALA A . n A 1 194 ARG 194 191 191 ARG ARG A . n A 1 195 MET 195 192 192 MET MET A . n A 1 196 ARG 196 193 193 ARG ARG A . n A 1 197 GLY 197 194 194 GLY GLY A . n A 1 198 ILE 198 195 195 ILE ILE A . n A 1 199 SER 199 196 196 SER SER A . n A 1 200 ASP 200 197 197 ASP ASP A . n A 1 201 LYS 201 198 198 LYS LYS A . n A 1 202 TYR 202 199 199 TYR TYR A . n A 1 203 PHE 203 200 200 PHE PHE A . n A 1 204 ALA 204 201 201 ALA ALA A . n A 1 205 PHE 205 202 202 PHE PHE A . n A 1 206 LEU 206 203 203 LEU LEU A . n A 1 207 GLU 207 204 204 GLU GLU A . n A 1 208 LEU 208 205 205 LEU LEU A . n A 1 209 ALA 209 206 206 ALA ALA A . n A 1 210 THR 210 207 207 THR THR A . n A 1 211 VAL 211 208 208 VAL VAL A . n A 1 212 LEU 212 209 209 LEU LEU A . n A 1 213 ASN 213 210 210 ASN ASN A . n A 1 214 GLY 214 211 211 GLY GLY A . n A 1 215 ASP 215 212 212 ASP ASP A . n A 1 216 PHE 216 213 213 PHE PHE A . n A 1 217 ASN 217 214 214 ASN ASN A . n A 1 218 GLU 218 215 215 GLU GLU A . n A 1 219 LEU 219 216 216 LEU LEU A . n A 1 220 LYS 220 217 217 LYS LYS A . n A 1 221 LYS 221 218 218 LYS LYS A . n A 1 222 GLN 222 219 219 GLN GLN A . n A 1 223 SER 223 220 220 SER SER A . n A 1 224 SER 224 221 221 SER SER A . n A 1 225 TRP 225 222 222 TRP TRP A . n A 1 226 GLU 226 223 223 GLU GLU A . n A 1 227 TYR 227 224 224 TYR TYR A . n A 1 228 ARG 228 225 225 ARG ARG A . n A 1 229 ASN 229 226 226 ASN ASN A . n A 1 230 LYS 230 227 227 LYS LYS A . n A 1 231 TYR 231 228 228 TYR TYR A . n A 1 232 ALA 232 229 229 ALA ALA A . n A 1 233 GLN 233 230 230 GLN GLN A . n A 1 234 LYS 234 231 231 LYS LYS A . n A 1 235 LYS 235 232 232 LYS LYS A . n A 1 236 ILE 236 233 233 ILE ILE A . n A 1 237 ARG 237 234 234 ARG ARG A . n A 1 238 HIS 238 235 235 HIS HIS A . n A 1 239 MET 239 236 236 MET MET A . n A 1 240 ARG 240 237 237 ARG ARG A . n A 1 241 GLU 241 238 238 GLU GLU A . n A 1 242 ASN 242 239 239 ASN ASN A . n A 1 243 ALA 243 240 240 ALA ALA A . n A 1 244 ILE 244 241 241 ILE ILE A . n A 1 245 PRO 245 242 242 PRO PRO A . n A 1 246 SER 246 243 243 SER SER A . n A 1 247 ILE 247 244 244 ILE ILE A . n A 1 248 GLU 248 245 245 GLU GLU A . n A 1 249 GLU 249 246 246 GLU GLU A . n A 1 250 GLN 250 247 247 GLN GLN A . n A 1 251 GLY 251 248 248 GLY GLY A . n A 1 252 TYR 252 249 249 TYR TYR A . n A 1 253 TRP 253 250 250 TRP TRP A . n A 1 254 LYS 254 251 251 LYS LYS A . n A 1 255 GLY 255 252 252 GLY GLY A . n A 1 256 THR 256 253 253 THR THR A . n A 1 257 PRO 257 254 254 PRO PRO A . n A 1 258 THR 258 255 255 THR THR A . n A 1 259 ILE 259 256 256 ILE ILE A . n A 1 260 ASP 260 257 257 ASP ASP A . n A 1 261 GLU 261 258 258 GLU GLU A . n A 1 262 LEU 262 259 259 LEU LEU A . n A 1 263 LYS 263 260 260 LYS LYS A . n A 1 264 LEU 264 261 261 LEU LEU A . n A 1 265 LEU 265 262 262 LEU LEU A . n A 1 266 LEU 266 263 263 LEU LEU A . n A 1 267 PHE 267 264 264 PHE PHE A . n A 1 268 LEU 268 265 265 LEU LEU A . n A 1 269 ALA 269 266 266 ALA ALA A . n A 1 270 SER 270 267 267 SER SER A . n A 1 271 ASN 271 268 268 ASN ASN A . n A 1 272 LEU 272 269 269 LEU LEU A . n A 1 273 ASN 273 270 270 ASN ASN A . n A 1 274 ARG 274 271 271 ARG ARG A . n A 1 275 THR 275 272 272 THR THR A . n A 1 276 GLU 276 273 273 GLU GLU A . n A 1 277 VAL 277 274 274 VAL VAL A . n A 1 278 ASN 278 275 275 ASN ASN A . n A 1 279 ASP 279 276 276 ASP ASP A . n A 1 280 ALA 280 277 277 ALA ALA A . n A 1 281 ILE 281 278 278 ILE ILE A . n A 1 282 ASN 282 279 279 ASN ASN A . n A 1 283 ASN 283 280 280 ASN ASN A . n A 1 284 VAL 284 281 281 VAL VAL A . n A 1 285 GLU 285 282 282 GLU GLU A . n A 1 286 ARG 286 283 283 ARG ARG A . n A 1 287 LEU 287 284 284 LEU LEU A . n A 1 288 GLU 288 285 285 GLU GLU A . n A 1 289 SER 289 286 286 SER SER A . n A 1 290 THR 290 287 287 THR THR A . n A 1 291 HIS 291 288 288 HIS HIS A . n A 1 292 TYR 292 289 289 TYR TYR A . n A 1 293 ILE 293 290 290 ILE ILE A . n A 1 294 GLU 294 291 291 GLU GLU A . n A 1 295 ASN 295 292 292 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD 1 334 334 FAD FAD A . C 3 HOH 1 293 1 HOH HOH A . C 3 HOH 2 294 2 HOH HOH A . C 3 HOH 3 295 3 HOH HOH A . C 3 HOH 4 296 4 HOH HOH A . C 3 HOH 5 297 5 HOH HOH A . C 3 HOH 6 298 6 HOH HOH A . C 3 HOH 7 299 7 HOH HOH A . C 3 HOH 8 300 8 HOH HOH A . C 3 HOH 9 301 9 HOH HOH A . C 3 HOH 10 302 10 HOH HOH A . C 3 HOH 11 303 11 HOH HOH A . C 3 HOH 12 304 12 HOH HOH A . C 3 HOH 13 305 13 HOH HOH A . C 3 HOH 14 306 14 HOH HOH A . C 3 HOH 15 307 15 HOH HOH A . C 3 HOH 16 308 16 HOH HOH A . C 3 HOH 17 309 17 HOH HOH A . C 3 HOH 18 310 18 HOH HOH A . C 3 HOH 19 311 19 HOH HOH A . C 3 HOH 20 312 20 HOH HOH A . C 3 HOH 21 313 21 HOH HOH A . C 3 HOH 22 314 22 HOH HOH A . C 3 HOH 23 315 23 HOH HOH A . C 3 HOH 24 316 24 HOH HOH A . C 3 HOH 25 317 25 HOH HOH A . C 3 HOH 26 318 26 HOH HOH A . C 3 HOH 27 319 27 HOH HOH A . C 3 HOH 28 320 28 HOH HOH A . C 3 HOH 29 321 29 HOH HOH A . C 3 HOH 30 322 30 HOH HOH A . C 3 HOH 31 323 31 HOH HOH A . C 3 HOH 32 324 32 HOH HOH A . C 3 HOH 33 325 33 HOH HOH A . C 3 HOH 34 326 34 HOH HOH A . C 3 HOH 35 327 35 HOH HOH A . C 3 HOH 36 328 36 HOH HOH A . C 3 HOH 37 329 37 HOH HOH A . C 3 HOH 38 330 38 HOH HOH A . C 3 HOH 39 331 39 HOH HOH A . C 3 HOH 40 332 40 HOH HOH A . C 3 HOH 41 333 41 HOH HOH A . C 3 HOH 42 335 42 HOH HOH A . C 3 HOH 43 336 43 HOH HOH A . C 3 HOH 44 337 44 HOH HOH A . C 3 HOH 45 338 45 HOH HOH A . C 3 HOH 46 339 46 HOH HOH A . C 3 HOH 47 340 47 HOH HOH A . C 3 HOH 48 341 48 HOH HOH A . C 3 HOH 49 342 49 HOH HOH A . C 3 HOH 50 343 50 HOH HOH A . C 3 HOH 51 344 51 HOH HOH A . C 3 HOH 52 345 52 HOH HOH A . C 3 HOH 53 346 53 HOH HOH A . C 3 HOH 54 347 54 HOH HOH A . C 3 HOH 55 348 55 HOH HOH A . C 3 HOH 56 349 56 HOH HOH A . C 3 HOH 57 350 57 HOH HOH A . C 3 HOH 58 351 58 HOH HOH A . C 3 HOH 59 352 59 HOH HOH A . C 3 HOH 60 353 60 HOH HOH A . C 3 HOH 61 354 61 HOH HOH A . C 3 HOH 62 355 62 HOH HOH A . C 3 HOH 63 356 63 HOH HOH A . C 3 HOH 64 357 64 HOH HOH A . C 3 HOH 65 358 65 HOH HOH A . C 3 HOH 66 359 66 HOH HOH A . C 3 HOH 67 360 67 HOH HOH A . C 3 HOH 68 361 68 HOH HOH A . C 3 HOH 69 362 69 HOH HOH A . C 3 HOH 70 363 70 HOH HOH A . C 3 HOH 71 364 71 HOH HOH A . C 3 HOH 72 365 72 HOH HOH A . C 3 HOH 73 366 73 HOH HOH A . C 3 HOH 74 367 74 HOH HOH A . C 3 HOH 75 368 75 HOH HOH A . C 3 HOH 76 369 76 HOH HOH A . C 3 HOH 77 370 77 HOH HOH A . C 3 HOH 78 371 78 HOH HOH A . C 3 HOH 79 372 79 HOH HOH A . C 3 HOH 80 373 80 HOH HOH A . C 3 HOH 81 374 81 HOH HOH A . C 3 HOH 82 375 82 HOH HOH A . C 3 HOH 83 376 83 HOH HOH A . C 3 HOH 84 377 84 HOH HOH A . C 3 HOH 85 378 85 HOH HOH A . C 3 HOH 86 379 86 HOH HOH A . C 3 HOH 87 380 87 HOH HOH A . C 3 HOH 88 381 88 HOH HOH A . C 3 HOH 89 382 89 HOH HOH A . C 3 HOH 90 383 90 HOH HOH A . C 3 HOH 91 384 91 HOH HOH A . C 3 HOH 92 385 92 HOH HOH A . C 3 HOH 93 386 93 HOH HOH A . C 3 HOH 94 387 94 HOH HOH A . C 3 HOH 95 388 95 HOH HOH A . C 3 HOH 96 389 96 HOH HOH A . C 3 HOH 97 390 97 HOH HOH A . C 3 HOH 98 391 98 HOH HOH A . C 3 HOH 99 392 99 HOH HOH A . C 3 HOH 100 393 100 HOH HOH A . C 3 HOH 101 394 101 HOH HOH A . C 3 HOH 102 395 102 HOH HOH A . C 3 HOH 103 396 103 HOH HOH A . C 3 HOH 104 397 104 HOH HOH A . C 3 HOH 105 398 105 HOH HOH A . C 3 HOH 106 399 106 HOH HOH A . C 3 HOH 107 400 107 HOH HOH A . C 3 HOH 108 401 108 HOH HOH A . C 3 HOH 109 402 109 HOH HOH A . C 3 HOH 110 403 110 HOH HOH A . C 3 HOH 111 404 111 HOH HOH A . C 3 HOH 112 405 112 HOH HOH A . C 3 HOH 113 406 113 HOH HOH A . C 3 HOH 114 407 114 HOH HOH A . C 3 HOH 115 408 115 HOH HOH A . C 3 HOH 116 409 116 HOH HOH A . C 3 HOH 117 410 117 HOH HOH A . C 3 HOH 118 411 118 HOH HOH A . C 3 HOH 119 412 119 HOH HOH A . C 3 HOH 120 413 120 HOH HOH A . C 3 HOH 121 414 121 HOH HOH A . C 3 HOH 122 415 122 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7730 ? 1 MORE -64 ? 1 'SSA (A^2)' 24430 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 45.6530000000 0.8660254038 -0.5000000000 0.0000000000 -79.0733155179 0.0000000000 0.0000000000 -1.0000000000 33.4650000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-05 2 'Structure model' 1 1 2016-12-14 3 'Structure model' 1 2 2017-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_detector # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_detector.detector' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language EDNA 'data collection' . ? 1 ? ? ? ? PHENIX 'model building' . ? 2 ? ? ? ? CNS refinement 1.2 ? 3 ? ? ? ? XDS 'data reduction' . ? 4 ? ? ? ? SCALA 'data scaling' . ? 5 ? ? ? ? PHENIX phasing . ? 6 ? ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 80 ? ? -170.92 114.84 2 1 CYS A 146 ? ? -66.52 58.98 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 32 ? CG ? A HIS 35 CG 2 1 Y 1 A HIS 32 ? ND1 ? A HIS 35 ND1 3 1 Y 1 A HIS 32 ? CD2 ? A HIS 35 CD2 4 1 Y 1 A HIS 32 ? CE1 ? A HIS 35 CE1 5 1 Y 1 A HIS 32 ? NE2 ? A HIS 35 NE2 6 1 Y 1 A LYS 148 ? CG ? A LYS 151 CG 7 1 Y 1 A LYS 148 ? CD ? A LYS 151 CD 8 1 Y 1 A LYS 148 ? CE ? A LYS 151 CE 9 1 Y 1 A LYS 148 ? NZ ? A LYS 151 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A SER 2 ? A SER 5 6 1 Y 1 A LEU 3 ? A LEU 6 7 1 Y 1 A SER 4 ? A SER 7 8 1 Y 1 A LYS 5 ? A LYS 8 9 1 Y 1 A GLN 6 ? A GLN 9 10 1 Y 1 A VAL 7 ? A VAL 10 11 1 Y 1 A VAL 8 ? A VAL 11 12 1 Y 1 A PRO 9 ? A PRO 12 13 1 Y 1 A THR 10 ? A THR 13 14 1 Y 1 A HIS 11 ? A HIS 14 15 1 Y 1 A ARG 12 ? A ARG 15 16 1 Y 1 A VAL 13 ? A VAL 16 17 1 Y 1 A GLU 14 ? A GLU 17 18 1 Y 1 A ILE 15 ? A ILE 18 19 1 Y 1 A ALA 16 ? A ALA 19 20 1 Y 1 A PRO 17 ? A PRO 20 21 1 Y 1 A ASN 18 ? A ASN 21 22 1 Y 1 A SER 19 ? A SER 22 23 1 Y 1 A GLU 20 ? A GLU 23 24 1 Y 1 A SER 21 ? A SER 24 25 1 Y 1 A THR 22 ? A THR 25 26 1 Y 1 A ALA 23 ? A ALA 26 27 1 Y 1 A LYS 24 ? A LYS 27 28 1 Y 1 A MET 25 ? A MET 28 29 1 Y 1 A ASP 26 ? A ASP 29 30 1 Y 1 A HIS 27 ? A HIS 30 31 1 Y 1 A SER 28 ? A SER 31 32 1 Y 1 A ASN 29 ? A ASN 32 33 1 Y 1 A TYR 30 ? A TYR 33 34 1 Y 1 A GLN 31 ? A GLN 34 35 1 Y 1 A PRO 149 ? A PRO 152 36 1 Y 1 A VAL 150 ? A VAL 153 37 1 Y 1 A PRO 151 ? A PRO 154 38 1 Y 1 A THR 152 ? A THR 155 39 1 Y 1 A VAL 153 ? A VAL 156 40 1 Y 1 A LYS 154 ? A LYS 157 41 1 Y 1 A GLY 155 ? A GLY 158 42 1 Y 1 A CYS 156 ? A CYS 159 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN-ADENINE DINUCLEOTIDE' FAD 3 water HOH #