HEADER LIGASE/PROTEIN BINDING 11-AUG-11 3TDI TITLE YEAST CUL1WHB-DCN1P ACETYLATED UBC12N COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 70-269; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NEDD8-CONJUGATING ENZYME UBC12; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: UNP RESIDUES 2-24; COMPND 10 SYNONYM: RUB1-CONJUGATING ENZYME, RUB1-PROTEIN LIGASE, UBIQUITIN COMPND 11 CARRIER PROTEIN 12; COMPND 12 EC: 6.3.2.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: DCN1, YLR128W, L3111; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: L2142.3, UBC12, YLR306W; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS E2:E3, LIGASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.C.SCOTT,J.K.MONDA,E.J.BENNETT,J.W.HARPER,B.A.SCHULMAN REVDAT 3 08-NOV-17 3TDI 1 REMARK REVDAT 2 23-NOV-11 3TDI 1 JRNL REVDAT 1 12-OCT-11 3TDI 0 JRNL AUTH D.C.SCOTT,J.K.MONDA,E.J.BENNETT,J.W.HARPER,B.A.SCHULMAN JRNL TITL N-TERMINAL ACETYLATION ACTS AS AN AVIDITY ENHANCER WITHIN AN JRNL TITL 2 INTERCONNECTED MULTIPROTEIN COMPLEX. JRNL REF SCIENCE V. 334 674 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21940857 JRNL DOI 10.1126/SCIENCE.1209307 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 19970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3639 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3747 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5061 ; 1.028 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 4.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;34.467 ;24.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;14.574 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2837 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2148 ; 0.686 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3488 ; 1.407 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1597 ; 3.769 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 5.698 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 150 REMARK 3 RESIDUE RANGE : A 151 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1179 -10.8600 -17.0884 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.0625 REMARK 3 T33: 0.1147 T12: 0.0235 REMARK 3 T13: -0.0015 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.4536 L22: 0.4238 REMARK 3 L33: 0.1189 L12: -0.2607 REMARK 3 L13: 0.3316 L23: -0.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0036 S13: 0.0308 REMARK 3 S21: 0.0370 S22: -0.0059 S23: 0.0418 REMARK 3 S31: -0.0554 S32: -0.0115 S33: -0.0069 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 153 REMARK 3 RESIDUE RANGE : B 154 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0691 -36.8944 -12.0903 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.0597 REMARK 3 T33: 0.1175 T12: 0.0096 REMARK 3 T13: 0.0049 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.8379 L22: 0.2420 REMARK 3 L33: 0.0588 L12: 0.0152 REMARK 3 L13: -0.1721 L23: 0.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.0335 S13: -0.0504 REMARK 3 S21: -0.0004 S22: -0.0190 S23: -0.0175 REMARK 3 S31: 0.0129 S32: -0.0007 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7624 -49.4532 -20.4596 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0972 REMARK 3 T33: 0.2543 T12: -0.0354 REMARK 3 T13: -0.0162 T23: -0.1215 REMARK 3 L TENSOR REMARK 3 L11: 12.2389 L22: 11.8311 REMARK 3 L33: 33.4371 L12: -7.6566 REMARK 3 L13: -2.9899 L23: 16.5352 REMARK 3 S TENSOR REMARK 3 S11: 0.2860 S12: 0.2629 S13: -0.5918 REMARK 3 S21: 0.3389 S22: -0.4943 S23: 0.0651 REMARK 3 S31: 1.0416 S32: -1.1899 S33: 0.2083 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 11 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8031 -0.6717 -23.2059 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.1660 REMARK 3 T33: 0.2892 T12: 0.0590 REMARK 3 T13: 0.0520 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 4.7133 L22: 5.6832 REMARK 3 L33: 6.1796 L12: -5.1269 REMARK 3 L13: 5.3953 L23: -5.8854 REMARK 3 S TENSOR REMARK 3 S11: 0.1196 S12: 0.5141 S13: 0.4204 REMARK 3 S21: -0.1742 S22: -0.5945 S23: -0.3652 REMARK 3 S31: 0.1153 S32: 0.5949 S33: 0.4749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91917 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1M BIS-TRIS PROPANE, REMARK 280 0.2M NA/K TARTRATE, PH 7.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.96150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.96150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.45300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.21050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.45300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.21050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.96150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.45300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.21050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.96150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.45300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.21050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 68 REMARK 465 GLN B 269 REMARK 465 GLU C 15 REMARK 465 ASN C 16 REMARK 465 GLU C 17 REMARK 465 ASN C 18 REMARK 465 SER C 19 REMARK 465 SER C 20 REMARK 465 SER C 21 REMARK 465 ILE C 22 REMARK 465 GLN C 23 REMARK 465 PRO C 24 REMARK 465 ASN C 25 REMARK 465 LYS D 14 REMARK 465 GLU D 15 REMARK 465 ASN D 16 REMARK 465 GLU D 17 REMARK 465 ASN D 18 REMARK 465 SER D 19 REMARK 465 SER D 20 REMARK 465 SER D 21 REMARK 465 ILE D 22 REMARK 465 GLN D 23 REMARK 465 PRO D 24 REMARK 465 ASN D 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 256 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 12 CG CD CE NZ REMARK 470 GLN D 13 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 2 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 253 35.54 -86.73 REMARK 500 ASN A 86 -1.17 81.88 REMARK 500 ASP A 89 -165.51 -106.72 REMARK 500 ASN A 178 -5.91 77.64 REMARK 500 GLN A 268 30.26 -85.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TDU RELATED DB: PDB REMARK 900 RELATED ID: 3TDZ RELATED DB: PDB DBREF 3TDI A 70 269 UNP Q12395 DCN1_YEAST 70 269 DBREF 3TDI B 70 269 UNP Q12395 DCN1_YEAST 70 269 DBREF 3TDI C 3 25 UNP P52491 UBC12_YEAST 2 24 DBREF 3TDI D 3 25 UNP P52491 UBC12_YEAST 2 24 SEQADV 3TDI GLY A 68 UNP Q12395 EXPRESSION TAG SEQADV 3TDI SER A 69 UNP Q12395 EXPRESSION TAG SEQADV 3TDI GLY B 68 UNP Q12395 EXPRESSION TAG SEQADV 3TDI SER B 69 UNP Q12395 EXPRESSION TAG SEQADV 3TDI ACE C 1 UNP P52491 ACETYLATION SEQADV 3TDI MET C 2 UNP P52491 INITIATING METHIONINE SEQADV 3TDI ACE D 1 UNP P52491 ACETYLATION SEQADV 3TDI MET D 2 UNP P52491 INITIATING METHIONINE SEQRES 1 B 202 GLY SER VAL TYR PRO LYS GLU LEU THR GLN VAL PHE GLU SEQRES 2 B 202 HIS TYR ILE ASN ASN ASN LEU PHE ASP ILE ASP SER LEU SEQRES 3 B 202 VAL LYS PHE ILE GLU GLU LEU GLY TYR ASN LEU GLU ASP SEQRES 4 B 202 LEU ALA THR LEU CYS LEU ALA HIS LEU LEU GLY TYR LYS SEQRES 5 B 202 LYS LEU GLU GLU PRO LEU LYS ARG GLU ASP PHE LEU SER SEQRES 6 B 202 THR TRP PHE MET GLN GLY CYS SER THR ILE SER ASP MET SEQRES 7 B 202 GLN GLU CYS ILE LYS THR LEU ASP VAL LYS LEU HIS GLU SEQRES 8 B 202 ASP LEU GLN TYR PHE THR GLN ILE TYR ASN TYR ALA PHE SEQRES 9 B 202 ASN LEU ILE LEU ASP PRO ASN ARG LYS ASP ILE ASP THR SEQRES 10 B 202 ASP GLU GLY ILE GLN TYR TRP LYS LEU PHE PHE GLN PRO SEQRES 11 B 202 GLU TYR PRO VAL ARG MET GLU PRO ASP LEU LEU GLU ALA SEQRES 12 B 202 TRP PHE ARG PHE LEU ARG ASP GLU GLY LYS THR THR ILE SEQRES 13 B 202 SER LYS ASP THR TRP ARG MET LEU LEU LEU PHE PHE LYS SEQRES 14 B 202 ARG TYR PRO THR ILE GLN LYS ILE ILE SER ASP TYR ASP SEQRES 15 B 202 GLU THR ALA ALA TRP PRO PHE ILE ILE ASP GLU PHE TYR SEQRES 16 B 202 GLU CYS LEU GLN ASP GLN GLN SEQRES 1 A 202 GLY SER VAL TYR PRO LYS GLU LEU THR GLN VAL PHE GLU SEQRES 2 A 202 HIS TYR ILE ASN ASN ASN LEU PHE ASP ILE ASP SER LEU SEQRES 3 A 202 VAL LYS PHE ILE GLU GLU LEU GLY TYR ASN LEU GLU ASP SEQRES 4 A 202 LEU ALA THR LEU CYS LEU ALA HIS LEU LEU GLY TYR LYS SEQRES 5 A 202 LYS LEU GLU GLU PRO LEU LYS ARG GLU ASP PHE LEU SER SEQRES 6 A 202 THR TRP PHE MET GLN GLY CYS SER THR ILE SER ASP MET SEQRES 7 A 202 GLN GLU CYS ILE LYS THR LEU ASP VAL LYS LEU HIS GLU SEQRES 8 A 202 ASP LEU GLN TYR PHE THR GLN ILE TYR ASN TYR ALA PHE SEQRES 9 A 202 ASN LEU ILE LEU ASP PRO ASN ARG LYS ASP ILE ASP THR SEQRES 10 A 202 ASP GLU GLY ILE GLN TYR TRP LYS LEU PHE PHE GLN PRO SEQRES 11 A 202 GLU TYR PRO VAL ARG MET GLU PRO ASP LEU LEU GLU ALA SEQRES 12 A 202 TRP PHE ARG PHE LEU ARG ASP GLU GLY LYS THR THR ILE SEQRES 13 A 202 SER LYS ASP THR TRP ARG MET LEU LEU LEU PHE PHE LYS SEQRES 14 A 202 ARG TYR PRO THR ILE GLN LYS ILE ILE SER ASP TYR ASP SEQRES 15 A 202 GLU THR ALA ALA TRP PRO PHE ILE ILE ASP GLU PHE TYR SEQRES 16 A 202 GLU CYS LEU GLN ASP GLN GLN SEQRES 1 C 25 ACE MET LEU LYS LEU ARG GLN LEU GLN LYS LYS LYS GLN SEQRES 2 C 25 LYS GLU ASN GLU ASN SER SER SER ILE GLN PRO ASN SEQRES 1 D 25 ACE MET LEU LYS LEU ARG GLN LEU GLN LYS LYS LYS GLN SEQRES 2 D 25 LYS GLU ASN GLU ASN SER SER SER ILE GLN PRO ASN HET ACE C 1 3 HET ACE D 1 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 HOH *137(H2 O) HELIX 1 12 PRO B 72 ILE B 83 1 12 HELIX 2 13 ASP B 89 GLY B 101 1 13 HELIX 3 14 LEU B 107 LEU B 116 1 10 HELIX 4 15 LYS B 126 GLY B 138 1 13 HELIX 5 16 THR B 141 ASP B 159 1 19 HELIX 6 17 ASP B 159 LEU B 175 1 17 HELIX 7 18 THR B 184 PHE B 195 1 12 HELIX 8 19 GLU B 204 GLU B 218 1 15 HELIX 9 20 SER B 224 TYR B 238 1 15 HELIX 10 21 THR B 240 TYR B 248 1 9 HELIX 11 22 PRO B 255 GLN B 268 1 14 HELIX 12 1 PRO A 72 ILE A 83 1 12 HELIX 13 2 ASP A 89 GLY A 101 1 13 HELIX 14 3 LEU A 107 LEU A 116 1 10 HELIX 15 4 LYS A 126 GLN A 137 1 12 HELIX 16 5 THR A 141 ASP A 159 1 19 HELIX 17 6 ASP A 159 LEU A 175 1 17 HELIX 18 7 THR A 184 PHE A 195 1 12 HELIX 19 8 GLU A 204 GLU A 218 1 15 HELIX 20 9 SER A 224 TYR A 238 1 15 HELIX 21 10 THR A 240 TYR A 248 1 9 HELIX 22 11 PRO A 255 GLN A 268 1 14 SHEET 1 A 2 ILE A 182 ASP A 183 0 SHEET 2 A 2 THR A 222 ILE A 223 -1 O ILE A 223 N ILE A 182 SHEET 1 B 2 ILE B 182 ASP B 183 0 SHEET 2 B 2 THR B 222 ILE B 223 -1 O ILE B 223 N ILE B 182 LINK C ACE C 1 N MET C 2 1555 1555 1.34 LINK C ACE D 1 N MET D 2 1555 1555 1.32 CRYST1 72.906 98.421 143.923 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006948 0.00000