HEADER MEMBRANE PROTEIN 11-AUG-11 3TDJ TITLE CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN (S1S2J-L483Y- TITLE 2 N754S) IN COMPLEX WITH GLUTAMATE AND BPAM-97 AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 413-527 AND 653-796; COMPND 5 SYNONYM: GLUR-2, AMPA-SELECTIVE GLUTAMATE RECEPTOR 2, GLUR-B, GLUR- COMPND 6 K2, GLUTAMATE RECEPTOR IONOTROPIC, AMPA 2, GLUA2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GLUR2, GRIA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS AMPA RECEPTOR LIGAND-BINDING DOMAIN, GLUA2 S1S2J-L483Y-N754S, BPAM- KEYWDS 2 97, ALLOSTERIC MODULATION, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.KRINTEL,K.FRYDENVANG,M.GAJHEDE,J.S.KASTRUP REVDAT 5 20-NOV-24 3TDJ 1 REMARK REVDAT 4 13-SEP-23 3TDJ 1 REMARK SEQADV REVDAT 3 09-AUG-17 3TDJ 1 SOURCE REMARK REVDAT 2 28-DEC-11 3TDJ 1 JRNL REVDAT 1 21-SEP-11 3TDJ 0 JRNL AUTH C.KRINTEL,K.FRYDENVANG,L.OLSEN,M.T.KRISTENSEN,O.DE BARRIOS, JRNL AUTH 2 P.NAUR,P.FRANCOTTE,B.PIROTTE,M.GAJHEDE,J.S.KASTRUP JRNL TITL THERMODYNAMICS AND STRUCTURAL ANALYSIS OF POSITIVE JRNL TITL 2 ALLOSTERIC MODULATION OF THE IONOTROPIC GLUTAMATE RECEPTOR JRNL TITL 3 GLUA2. JRNL REF BIOCHEM.J. V. 441 173 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 21895609 JRNL DOI 10.1042/BJ20111221 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.SUN,R.OLSON,M.HORNING,N.ARMSTRONG,M.MAYER,E.GOUAUX REMARK 1 TITL MECHANISM OF GLUTAMATE RECEPTOR DESENSITIZATION. REMARK 1 REF NATURE V. 417 245 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 12015593 REMARK 1 DOI 10.1038/417245A REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2193 - 4.7975 0.99 2857 142 0.2073 0.2318 REMARK 3 2 4.7975 - 3.8127 1.00 2730 158 0.1402 0.1551 REMARK 3 3 3.8127 - 3.3322 1.00 2705 138 0.1501 0.2034 REMARK 3 4 3.3322 - 3.0281 1.00 2700 152 0.1625 0.2039 REMARK 3 5 3.0281 - 2.8114 1.00 2669 139 0.1773 0.2469 REMARK 3 6 2.8114 - 2.6459 1.00 2685 139 0.1761 0.1925 REMARK 3 7 2.6459 - 2.5135 1.00 2663 134 0.1630 0.2302 REMARK 3 8 2.5135 - 2.4042 1.00 2674 122 0.1644 0.2093 REMARK 3 9 2.4042 - 2.3117 1.00 2666 150 0.1711 0.2418 REMARK 3 10 2.3117 - 2.2320 1.00 2610 157 0.1810 0.2725 REMARK 3 11 2.2320 - 2.1623 1.00 2643 144 0.1743 0.2066 REMARK 3 12 2.1623 - 2.1005 1.00 2652 124 0.1654 0.2090 REMARK 3 13 2.1005 - 2.0452 1.00 2620 161 0.1804 0.2424 REMARK 3 14 2.0452 - 1.9953 1.00 2656 127 0.1821 0.2571 REMARK 3 15 1.9953 - 1.9500 1.00 2645 149 0.2106 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 61.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.61010 REMARK 3 B22 (A**2) : -1.59770 REMARK 3 B33 (A**2) : -0.01240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4339 REMARK 3 ANGLE : 1.015 5841 REMARK 3 CHIRALITY : 0.068 635 REMARK 3 PLANARITY : 0.004 719 REMARK 3 DIHEDRAL : 12.513 1693 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 24.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3H6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.2% PEG4000, 0.3 M LITHIUM SULFATE REMARK 280 AND 0.1 M PHOSPHATE-CITRATE., PH 4.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.43000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 GLY B 1 REMARK 465 GLY B 262 REMARK 465 SER B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 198 O HOH B 410 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 69 19.57 59.20 REMARK 500 PRO A 205 35.48 -89.71 REMARK 500 LYS A 218 -158.97 -156.37 REMARK 500 PRO B 205 30.28 -94.41 REMARK 500 LYS B 218 -159.41 -155.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3TJ B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3TJ B 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU B 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 274 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LBC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLUR2 LIGAND BINDING CORE (S1S2J-N775S) IN REMARK 900 COMPLEX WITH CYCLOTHIAZIDE (CTZ) AS WELL AS GLUTAMATE AT 1.8 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1LBB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NON-DESENSITIZING GLUR2 LIGAND BINDING REMARK 900 CORE MUTANT (S1S2J-L483Y) IN COMPLEX WITH AMPA AT 2.3 RESOLUTION REMARK 900 RELATED ID: 1LB9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NON-DESENSITIZING GLUR2 LIGAND BINDING REMARK 900 CORE MUTANT (S1S2J-L483Y) IN COMPLEX WITH ANTAGONIST DNQX AT 2.3 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 3H6T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE IGLUR2 LIGAND-BINDING CORE (S1S2J-N754S) REMARK 900 IN COMPLEX WITH GLUTAMATE AND CYCLOTHIAZIDE AT 2.25 A RESOLUTION REMARK 900 RELATED ID: 3IL1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AMPA SUBUNIT GLUR2 BOUND TO THE ALLOSTERIC REMARK 900 MODULATOR, IDRA-21 DBREF 3TDJ A 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 3TDJ A 120 263 UNP P19491 GRIA2_RAT 653 796 DBREF 3TDJ B 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 3TDJ B 120 263 UNP P19491 GRIA2_RAT 653 796 SEQADV 3TDJ GLY A 1 UNP P19491 EXPRESSION TAG SEQADV 3TDJ ALA A 2 UNP P19491 EXPRESSION TAG SEQADV 3TDJ TYR A 94 UNP P19491 LEU 504 ENGINEERED MUTATION SEQADV 3TDJ GLY A 118 UNP P19491 LINKER SEQADV 3TDJ THR A 119 UNP P19491 LINKER SEQADV 3TDJ SER A 242 UNP P19491 ASN 775 ENGINEERED MUTATION SEQADV 3TDJ GLY B 1 UNP P19491 EXPRESSION TAG SEQADV 3TDJ ALA B 2 UNP P19491 EXPRESSION TAG SEQADV 3TDJ TYR B 94 UNP P19491 LEU 504 ENGINEERED MUTATION SEQADV 3TDJ GLY B 118 UNP P19491 LINKER SEQADV 3TDJ THR B 119 UNP P19491 LINKER SEQADV 3TDJ SER B 242 UNP P19491 ASN 775 ENGINEERED MUTATION SEQRES 1 A 263 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 A 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 A 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 A 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 A 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 A 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 A 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 A 263 ILE THR TYR VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 A 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 A 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 A 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 A 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 A 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 A 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 A 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 A 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 A 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 A 263 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 A 263 ASN LEU ALA VAL LEU LYS LEU SER GLU GLN GLY LEU LEU SEQRES 20 A 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 A 263 CYS GLY SER SEQRES 1 B 263 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 B 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 B 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 B 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 B 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 B 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 B 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 B 263 ILE THR TYR VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 B 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 B 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 B 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 B 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 B 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 B 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 B 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 B 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 B 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 B 263 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 B 263 ASN LEU ALA VAL LEU LYS LEU SER GLU GLN GLY LEU LEU SEQRES 20 B 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 B 263 CYS GLY SER HET GLU A 401 10 HET SO4 A 265 5 HET CL A 266 1 HET CL A 267 1 HET GOL A 268 6 HET GOL A 269 6 HET GOL A 270 6 HET GOL A 271 6 HET GOL A 272 6 HET CL A 273 1 HET CL A 274 1 HET 3TJ B 400 15 HET 3TJ B 265 15 HET GLU B 399 10 HET SO4 B 266 5 HET GOL B 267 6 HET GOL B 268 6 HET GOL B 269 6 HET GOL B 270 6 HET GOL B 271 6 HET GOL B 272 6 HET SO4 B 273 5 HET CL B 274 1 HETNAM GLU GLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM 3TJ 4-ETHYL-7-FLUORO-3,4-DIHYDRO-2H-1,2,4-BENZOTHIADIAZINE HETNAM 2 3TJ 1,1-DIOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 CL 5(CL 1-) FORMUL 7 GOL 11(C3 H8 O3) FORMUL 14 3TJ 2(C9 H11 F N2 O2 S) FORMUL 26 HOH *518(H2 O) HELIX 1 1 ASN A 22 LEU A 26 5 5 HELIX 2 2 GLU A 27 GLU A 30 5 4 HELIX 3 3 GLY A 34 GLY A 48 1 15 HELIX 4 4 ASN A 72 TYR A 80 1 9 HELIX 5 5 THR A 93 VAL A 99 1 7 HELIX 6 6 SER A 123 LYS A 129 1 7 HELIX 7 7 GLY A 141 SER A 150 1 10 HELIX 8 8 ILE A 152 ALA A 165 1 14 HELIX 9 9 THR A 173 SER A 184 1 12 HELIX 10 10 SER A 194 GLN A 202 1 9 HELIX 11 11 SER A 229 GLN A 244 1 16 HELIX 12 12 GLY A 245 TRP A 255 1 11 HELIX 13 13 ASN B 22 LEU B 26 5 5 HELIX 14 14 GLU B 27 GLU B 30 5 4 HELIX 15 15 GLY B 34 GLY B 48 1 15 HELIX 16 16 ASN B 72 TYR B 80 1 9 HELIX 17 17 THR B 93 GLU B 98 1 6 HELIX 18 18 SER B 123 LYS B 129 1 7 HELIX 19 19 GLY B 141 SER B 150 1 10 HELIX 20 20 ILE B 152 ALA B 165 1 14 HELIX 21 21 THR B 173 SER B 184 1 12 HELIX 22 22 SER B 194 GLN B 202 1 9 HELIX 23 23 SER B 229 GLN B 244 1 16 HELIX 24 24 GLY B 245 TYR B 256 1 12 SHEET 1 A 3 LYS A 50 ILE A 55 0 SHEET 2 A 3 THR A 5 THR A 10 1 N VAL A 6 O LYS A 50 SHEET 3 A 3 ILE A 85 ALA A 86 1 O ILE A 85 N THR A 9 SHEET 1 B 2 MET A 18 MET A 19 0 SHEET 2 B 2 TYR A 32 GLU A 33 -1 O GLU A 33 N MET A 18 SHEET 1 C 2 ILE A 100 PHE A 102 0 SHEET 2 C 2 ALA A 223 PRO A 225 -1 O THR A 224 N ASP A 101 SHEET 1 D 2 MET A 107 LEU A 109 0 SHEET 2 D 2 LYS A 218 TYR A 220 -1 O LYS A 218 N LEU A 109 SHEET 1 E 4 ALA A 134 THR A 137 0 SHEET 2 E 4 TYR A 188 GLU A 193 1 O ALA A 189 N ALA A 134 SHEET 3 E 4 ILE A 111 LYS A 116 -1 N MET A 114 O TYR A 190 SHEET 4 E 4 THR A 208 VAL A 211 -1 O MET A 209 N ILE A 115 SHEET 1 F 3 TYR B 51 ILE B 55 0 SHEET 2 F 3 VAL B 6 THR B 10 1 N VAL B 8 O THR B 54 SHEET 3 F 3 ILE B 85 ALA B 86 1 O ILE B 85 N THR B 9 SHEET 1 G 2 MET B 18 MET B 19 0 SHEET 2 G 2 TYR B 32 GLU B 33 -1 O GLU B 33 N MET B 18 SHEET 1 H 2 ILE B 100 PHE B 102 0 SHEET 2 H 2 ALA B 223 PRO B 225 -1 O THR B 224 N ASP B 101 SHEET 1 I 2 MET B 107 LEU B 109 0 SHEET 2 I 2 LYS B 218 TYR B 220 -1 O LYS B 218 N LEU B 109 SHEET 1 J 4 ALA B 134 THR B 137 0 SHEET 2 J 4 TYR B 188 GLU B 193 1 O LEU B 191 N GLY B 136 SHEET 3 J 4 ILE B 111 LYS B 116 -1 N SER B 112 O LEU B 192 SHEET 4 J 4 THR B 208 VAL B 211 -1 O MET B 209 N ILE B 115 SSBOND 1 CYS A 206 CYS A 261 1555 1555 2.03 SSBOND 2 CYS B 206 CYS B 261 1555 1555 2.04 CISPEP 1 SER A 14 PRO A 15 0 -2.84 CISPEP 2 GLU A 166 PRO A 167 0 -2.13 CISPEP 3 LYS A 204 PRO A 205 0 3.31 CISPEP 4 SER B 14 PRO B 15 0 1.52 CISPEP 5 GLU B 166 PRO B 167 0 -3.67 CISPEP 6 LYS B 204 PRO B 205 0 3.69 SITE 1 AC1 12 TYR A 61 PRO A 89 LEU A 90 THR A 91 SITE 2 AC1 12 ARG A 96 GLY A 141 SER A 142 THR A 143 SITE 3 AC1 12 GLU A 193 HOH A 279 HOH A 292 HOH A 318 SITE 1 AC2 7 ALA A 63 SER A 140 LYS A 144 ARG A 148 SITE 2 AC2 7 HOH A 333 HOH A 374 HOH A 425 SITE 1 AC3 1 ARG A 163 SITE 1 AC4 1 ALA A 153 SITE 1 AC5 6 LYS A 240 GLN A 244 GOL A 269 HOH A 447 SITE 2 AC5 6 LYS B 151 HOH B 513 SITE 1 AC6 6 LYS A 240 GLU A 243 GOL A 268 HOH A 404 SITE 2 AC6 6 HOH A 447 ARG B 149 SITE 1 AC7 3 ARG A 148 TRP A 159 ARG A 163 SITE 1 AC8 5 ASP A 248 HOH A 392 ASN B 214 ASP B 216 SITE 2 AC8 5 SER B 217 SITE 1 AC9 6 MET A 19 HIS A 23 ARG A 31 HOH A 360 SITE 2 AC9 6 HOH A 504 LYS B 183 SITE 1 BC1 3 LYS A 116 LYS A 117 THR A 119 SITE 1 BC2 2 LYS A 50 TYR A 51 SITE 1 BC3 14 LYS A 104 PRO A 105 PHE A 106 MET A 107 SITE 2 BC3 14 SER A 108 SER A 242 ILE B 92 PRO B 105 SITE 3 BC3 14 MET B 107 SER B 108 SER B 217 LYS B 218 SITE 4 BC3 14 GLY B 219 3TJ B 265 SITE 1 BC4 14 ILE A 92 PRO A 105 SER A 108 SER A 217 SITE 2 BC4 14 LYS A 218 GLY A 219 HOH A 428 LYS B 104 SITE 3 BC4 14 PRO B 105 PHE B 106 MET B 107 SER B 108 SITE 4 BC4 14 SER B 242 3TJ B 400 SITE 1 BC5 13 TYR B 61 PRO B 89 LEU B 90 THR B 91 SITE 2 BC5 13 ARG B 96 LEU B 138 GLY B 141 SER B 142 SITE 3 BC5 13 THR B 143 GLU B 193 HOH B 277 HOH B 281 SITE 4 BC5 13 HOH B 319 SITE 1 BC6 6 SER B 140 LYS B 144 ARG B 148 HOH B 315 SITE 2 BC6 6 HOH B 356 HOH B 438 SITE 1 BC7 4 ARG B 148 TRP B 159 ARG B 163 HOH B 540 SITE 1 BC8 9 GLY B 62 ALA B 63 TRP B 71 THR B 93 SITE 2 BC8 9 ARG B 96 GLU B 145 HOH B 315 HOH B 426 SITE 3 BC8 9 HOH B 439 SITE 1 BC9 6 SER B 108 SER B 194 GLU B 198 ASN B 214 SITE 2 BC9 6 HOH B 361 HOH B 410 SITE 1 CC1 4 LYS A 258 HIS B 23 ARG B 31 HOH B 341 SITE 1 CC2 5 GLU B 27 GLY B 28 ARG B 31 LYS B 52 SITE 2 CC2 5 HOH B 371 SITE 1 CC3 3 LYS B 116 LYS B 185 HOH B 374 SITE 1 CC4 3 LYS B 4 THR B 5 HOH B 465 SITE 1 CC5 2 LYS B 82 LYS B 116 CRYST1 98.860 121.300 47.310 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021137 0.00000 CONECT 1638 2052 CONECT 2052 1638 CONECT 3715 4129 CONECT 4129 3715 CONECT 4141 4142 4143 4144 4145 CONECT 4142 4141 CONECT 4143 4141 CONECT 4144 4141 CONECT 4145 4141 CONECT 4148 4149 4150 CONECT 4149 4148 CONECT 4150 4148 4151 4152 CONECT 4151 4150 CONECT 4152 4150 4153 CONECT 4153 4152 CONECT 4154 4155 4156 CONECT 4155 4154 CONECT 4156 4154 4157 4158 CONECT 4157 4156 CONECT 4158 4156 4159 CONECT 4159 4158 CONECT 4160 4161 4162 CONECT 4161 4160 CONECT 4162 4160 4163 4164 CONECT 4163 4162 CONECT 4164 4162 4165 CONECT 4165 4164 CONECT 4166 4167 4168 CONECT 4167 4166 CONECT 4168 4166 4169 4170 CONECT 4169 4168 CONECT 4170 4168 4171 CONECT 4171 4170 CONECT 4172 4173 4174 CONECT 4173 4172 CONECT 4174 4172 4175 4176 CONECT 4175 4174 CONECT 4176 4174 4177 CONECT 4177 4176 CONECT 4180 4187 CONECT 4181 4194 CONECT 4182 4194 CONECT 4183 4190 CONECT 4184 4185 4190 CONECT 4185 4184 4191 CONECT 4186 4190 4192 CONECT 4187 4180 4193 CONECT 4188 4189 4193 CONECT 4189 4188 4194 CONECT 4190 4183 4184 4186 CONECT 4191 4185 4192 4193 CONECT 4192 4186 4191 4194 CONECT 4193 4187 4188 4191 CONECT 4194 4181 4182 4189 4192 CONECT 4195 4202 CONECT 4196 4209 CONECT 4197 4209 CONECT 4198 4205 CONECT 4199 4200 4205 CONECT 4200 4199 4206 CONECT 4201 4205 4207 CONECT 4202 4195 4208 CONECT 4203 4204 4208 CONECT 4204 4203 4209 CONECT 4205 4198 4199 4201 CONECT 4206 4200 4207 4208 CONECT 4207 4201 4206 4209 CONECT 4208 4202 4203 4206 CONECT 4209 4196 4197 4204 4207 CONECT 4220 4221 4222 4223 4224 CONECT 4221 4220 CONECT 4222 4220 CONECT 4223 4220 CONECT 4224 4220 CONECT 4225 4226 4227 CONECT 4226 4225 CONECT 4227 4225 4228 4229 CONECT 4228 4227 CONECT 4229 4227 4230 CONECT 4230 4229 CONECT 4231 4232 4233 CONECT 4232 4231 CONECT 4233 4231 4234 4235 CONECT 4234 4233 CONECT 4235 4233 4236 CONECT 4236 4235 CONECT 4237 4238 4239 CONECT 4238 4237 CONECT 4239 4237 4240 4241 CONECT 4240 4239 CONECT 4241 4239 4242 CONECT 4242 4241 CONECT 4243 4244 4245 CONECT 4244 4243 CONECT 4245 4243 4246 4247 CONECT 4246 4245 CONECT 4247 4245 4248 CONECT 4248 4247 CONECT 4249 4250 4251 CONECT 4250 4249 CONECT 4251 4249 4252 4253 CONECT 4252 4251 CONECT 4253 4251 4254 CONECT 4254 4253 CONECT 4255 4256 4257 CONECT 4256 4255 CONECT 4257 4255 4258 4259 CONECT 4258 4257 CONECT 4259 4257 4260 CONECT 4260 4259 CONECT 4261 4262 4263 4264 4265 CONECT 4262 4261 CONECT 4263 4261 CONECT 4264 4261 CONECT 4265 4261 MASTER 372 0 23 24 26 0 44 6 4717 2 115 42 END