HEADER TRANSFERASE 15-AUG-11 3TEL TITLE LYTR-CPS2A-PSR FAMILY PROTEIN WITH BOUND OCTAPRENYL PYROPHOSPHATE TITLE 2 LIPID AND MANGANESE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CPS2A, INTEGRAL MEMBRANE REGULATORY PROTEIN WZG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: WZG, SPC02_0004; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: PLASMID KEYWDS CELL WALL TECHOIC ACID SYNTHESIS, REPLICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KAWAI,J.MARLES-WRIGHT,R.M.CLEVERLEY,R.EMMINS,S.ISHIKAWA,M.KUWANO, AUTHOR 2 N.HEINZ,N.KHAI BUI,C.N.HOYLAND,N.OGASAWARA,R.J.LEWIS,W.VOLLMER, AUTHOR 3 R.A.DANIEL,J.ERRINGTON REVDAT 3 28-FEB-24 3TEL 1 REMARK SEQADV REVDAT 2 09-JAN-13 3TEL 1 JRNL REVDAT 1 12-OCT-11 3TEL 0 JRNL AUTH Y.KAWAI,J.MARLES-WRIGHT,R.M.CLEVERLEY,R.EMMINS,S.ISHIKAWA, JRNL AUTH 2 M.KUWANO,N.HEINZ,N.K.BUI,C.N.HOYLAND,N.OGASAWARA,R.J.LEWIS, JRNL AUTH 3 W.VOLLMER,R.A.DANIEL,J.ERRINGTON JRNL TITL A WIDESPREAD FAMILY OF BACTERIAL CELL WALL ASSEMBLY JRNL TITL 2 PROTEINS. JRNL REF EMBO J. V. 30 4931 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21964069 JRNL DOI 10.1038/EMBOJ.2011.358 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2149 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2998 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4081 ; 1.307 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 5.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;36.646 ;25.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;11.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.378 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2250 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2787 21.2224 -26.5256 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0481 REMARK 3 T33: 0.0270 T12: -0.0125 REMARK 3 T13: 0.0083 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.2630 L22: 0.7747 REMARK 3 L33: 0.3393 L12: -0.0186 REMARK 3 L13: -0.0153 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0439 S13: 0.0113 REMARK 3 S21: 0.0229 S22: -0.0064 S23: -0.1219 REMARK 3 S31: 0.0118 S32: 0.0088 S33: 0.0131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3TEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6 9% PEG 4K, REMARK 280 CRYPROTECTANT SOLUTION CONTAINING 10 MM MNCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.83050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.84050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.84050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.74575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.84050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.84050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.91525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.84050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.84050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.74575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.84050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.84050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.91525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.83050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 97 REMARK 465 GLY A 98 REMARK 465 LEU A 99 REMARK 465 THR A 100 REMARK 465 ASN A 101 REMARK 465 ARG A 102 REMARK 465 LEU A 103 REMARK 465 ASN A 104 REMARK 465 ALA A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 ASN A 108 REMARK 465 TYR A 109 REMARK 465 LYS A 482 REMARK 465 LEU A 483 REMARK 465 ALA A 484 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 LEU A 487 REMARK 465 GLU A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 111 CD OE1 OE2 REMARK 480 ASP A 121 CG OD1 OD2 REMARK 480 GLU A 125 CD OE1 OE2 REMARK 480 LYS A 180 CG CD CE NZ REMARK 480 LYS A 209 CE NZ REMARK 480 LYS A 213 CG CD CE NZ REMARK 480 LYS A 214 CB CG CD CE NZ REMARK 480 VAL A 215 CB CG1 CG2 REMARK 480 LYS A 222 CG CD CE NZ REMARK 480 ASP A 256 CG OD1 OD2 REMARK 480 LYS A 258 CE NZ REMARK 480 LYS A 259 CE NZ REMARK 480 ASP A 293 CG OD1 OD2 REMARK 480 LYS A 320 CE NZ REMARK 480 GLU A 355 CG CD OE1 OE2 REMARK 480 ARG A 372 CZ NH1 NH2 REMARK 480 GLU A 393 CD OE1 OE2 REMARK 480 GLU A 479 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 111 CG GLU A 111 CD -0.136 REMARK 500 LYS A 209 CD LYS A 209 CE -0.162 REMARK 500 LYS A 214 CA LYS A 214 CB 0.253 REMARK 500 ASP A 293 CB ASP A 293 CG 0.213 REMARK 500 ARG A 372 NE ARG A 372 CZ 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 214 CB - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ARG A 372 CD - NE - CZ ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG A 372 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 372 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 275 -115.68 61.68 REMARK 500 ASN A 279 19.43 59.47 REMARK 500 ASN A 314 -169.68 -117.88 REMARK 500 HIS A 340 56.43 34.82 REMARK 500 ARG A 364 -40.34 -135.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE OCTAPRENYL PYROPHOSPHATE LIGAND COPURIFIED WITH THE REMARK 600 OVEREXPRESSED CPS2A PROTEIN AND WAS DETECTED BY MASS SPECTROSCOPY; REMARK 600 THE MASS SPECTROSCOPY DATA DO NOT RULE OUT THE PRESENCE OF OTHER REMARK 600 POLYPRENOL PYROPHOSPHATE LIGANDS IN THE SAME BINDING SITE. THE REMARK 600 LIGAND HAS BEEN MODELLED WITH THE SEVEN CHIRAL DOUBLE BONDS IN THE REMARK 600 CIS CONFIGURATION, AS OCCUR IN THE EQUIVALENT DOUBLE BONDS IN THE REMARK 600 LIPID CHAIN OF THE NATURALLY OCCURING SUBSTRATE OF THE ENZYME. THE REMARK 600 ELECTRON DENSITY CAN ALSO ACOMMODATE DITRANSPENTACISOCTAPRENYL REMARK 600 PYROPHOSPHATE{IUPAC NAME[(2Z,6Z,10Z,14Z,18Z,22E,26E)-3,7,11,15,19, REMARK 600 23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL] REMARK 600 PHOSPHONOHYDROGEN PHOSPHATE}, AN INTERMEDIATE IN THE SYNTHESIS OF REMARK 600 UNDECAPRENYL PYROPHOSPHATE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 495 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ZTP A 1 O2 REMARK 620 2 ZTP A 1 O7 84.3 REMARK 620 3 ASP A 234 OD2 91.8 175.1 REMARK 620 4 ASP A 246 OD2 98.6 86.0 91.7 REMARK 620 5 HOH A 750 O 89.0 95.3 87.6 172.5 REMARK 620 6 HOH A 751 O 174.4 92.0 92.1 85.3 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZTP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 497 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 DBREF 3TEL A 98 481 UNP Q4K376 Q4K376_STRPN 101 484 SEQADV 3TEL MET A 97 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL ALA A 267 UNP Q4K376 ARG 270 ENGINEERED MUTATION SEQADV 3TEL LYS A 482 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL LEU A 483 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL ALA A 484 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL ALA A 485 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL ALA A 486 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL LEU A 487 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL GLU A 488 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL HIS A 489 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL HIS A 490 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL HIS A 491 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL HIS A 492 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL HIS A 493 UNP Q4K376 EXPRESSION TAG SEQADV 3TEL HIS A 494 UNP Q4K376 EXPRESSION TAG SEQRES 1 A 398 MET GLY LEU THR ASN ARG LEU ASN ALA THR SER ASN TYR SEQRES 2 A 398 SER GLU TYR SER LEU SER VAL ALA VAL LEU ALA ASP SER SEQRES 3 A 398 GLU ILE GLU ASN VAL THR GLN LEU THR SER VAL THR ALA SEQRES 4 A 398 PRO THR GLY THR ASP ASN GLU ASN ILE GLN LYS LEU LEU SEQRES 5 A 398 ALA ASP ILE LYS SER SER GLN ASN THR ASP LEU THR VAL SEQRES 6 A 398 ASN GLN SER SER SER TYR LEU ALA ALA TYR LYS SER LEU SEQRES 7 A 398 ILE ALA GLY GLU THR LYS ALA ILE VAL LEU ASN SER VAL SEQRES 8 A 398 PHE GLU ASN ILE ILE GLU LEU GLU TYR PRO ASP TYR ALA SEQRES 9 A 398 SER LYS ILE LYS LYS ILE TYR THR LYS GLY PHE THR LYS SEQRES 10 A 398 LYS VAL GLU ALA PRO LYS THR SER LYS ASN GLN SER PHE SEQRES 11 A 398 ASN ILE TYR VAL SER GLY ILE ASP THR TYR GLY PRO ILE SEQRES 12 A 398 SER SER VAL SER ARG SER ASP VAL ASN ILE LEU MET THR SEQRES 13 A 398 VAL ASN ARG ASP THR LYS LYS ILE LEU LEU THR THR THR SEQRES 14 A 398 PRO ALA ASP ALA TYR VAL PRO ILE ALA ASP GLY GLY ASN SEQRES 15 A 398 ASN GLN LYS ASP LYS LEU THR HIS ALA GLY ILE TYR GLY SEQRES 16 A 398 VAL ASP SER SER ILE HIS THR LEU GLU ASN LEU TYR GLY SEQRES 17 A 398 VAL ASP ILE ASN TYR TYR VAL ARG LEU ASN PHE THR SER SEQRES 18 A 398 PHE LEU LYS MET ILE ASP LEU LEU GLY GLY VAL ASP VAL SEQRES 19 A 398 HIS ASN ASP GLN GLU PHE SER ALA LEU HIS GLY LYS PHE SEQRES 20 A 398 HIS PHE PRO VAL GLY ASN VAL HIS LEU ASP SER GLU GLN SEQRES 21 A 398 ALA LEU GLY PHE VAL ARG GLU ARG TYR SER LEU ALA ASP SEQRES 22 A 398 GLY ASP ARG ASP ARG GLY ARG ASN GLN GLN LYS VAL ILE SEQRES 23 A 398 VAL ALA ILE LEU GLN LYS LEU THR SER THR GLU ALA LEU SEQRES 24 A 398 LYS ASN TYR SER THR ILE ILE ASN SER LEU GLN ASP SER SEQRES 25 A 398 ILE GLN THR ASN VAL PRO LEU GLU THR MET ILE ASN LEU SEQRES 26 A 398 VAL ASN ALA GLN LEU GLU SER GLY GLY ASN TYR LYS VAL SEQRES 27 A 398 ASN SER GLN ASP LEU LYS GLY THR GLY ARG MET ASP LEU SEQRES 28 A 398 PRO SER TYR ALA MET PRO ASP SER ASN LEU TYR VAL MET SEQRES 29 A 398 GLU ILE ASP ASP SER SER LEU ALA VAL VAL LYS ALA ALA SEQRES 30 A 398 ILE GLN ASP VAL MET GLU GLY ARG LYS LEU ALA ALA ALA SEQRES 31 A 398 LEU GLU HIS HIS HIS HIS HIS HIS HET ZTP A 1 49 HET MN A 495 1 HET ACT A 496 4 HET ACT A 497 4 HET ACT A 498 4 HET ACT A 499 4 HET EDO A 500 4 HET EDO A 501 4 HET EDO A 502 4 HETNAM ZTP (2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31- HETNAM 2 ZTP OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAEN-1- HETNAM 3 ZTP YL TRIHYDROGEN DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZTP C40 H68 O7 P2 FORMUL 3 MN MN 2+ FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *354(H2 O) HELIX 1 1 ASN A 126 LEU A 130 5 5 HELIX 2 2 ASP A 140 ASN A 156 1 17 HELIX 3 3 SER A 166 ALA A 176 1 11 HELIX 4 4 PHE A 188 TYR A 196 1 9 HELIX 5 5 ASP A 198 LYS A 202 1 5 HELIX 6 6 ALA A 274 ASN A 278 5 5 HELIX 7 7 HIS A 286 GLY A 291 1 6 HELIX 8 8 GLY A 291 GLY A 304 1 14 HELIX 9 9 PHE A 315 LEU A 325 1 11 HELIX 10 10 ASP A 353 GLU A 363 1 11 HELIX 11 11 ASP A 369 THR A 390 1 22 HELIX 12 12 SER A 391 ASN A 397 1 7 HELIX 13 13 ASN A 397 GLN A 406 1 10 HELIX 14 14 PRO A 414 GLY A 429 1 16 HELIX 15 15 ASP A 463 GLY A 480 1 18 SHEET 1 A 3 ILE A 182 ASN A 185 0 SHEET 2 A 3 GLU A 111 LEU A 119 -1 N ALA A 117 O ILE A 182 SHEET 3 A 3 ILE A 203 THR A 212 -1 O PHE A 211 N TYR A 112 SHEET 1 B 2 SER A 132 ALA A 135 0 SHEET 2 B 2 THR A 160 GLN A 163 1 O ASN A 162 N VAL A 133 SHEET 1 C 6 ILE A 409 THR A 411 0 SHEET 2 C 6 TYR A 309 ASN A 314 -1 N ARG A 312 O GLN A 410 SHEET 3 C 6 SER A 225 ILE A 233 1 N SER A 231 O VAL A 311 SHEET 4 C 6 SER A 245 ASN A 254 -1 O ILE A 249 N VAL A 230 SHEET 5 C 6 LYS A 259 THR A 264 -1 O LYS A 259 N ASN A 254 SHEET 6 C 6 LYS A 433 ASP A 438 1 O ASN A 435 N LEU A 262 SHEET 1 D 4 GLN A 280 LYS A 283 0 SHEET 2 D 4 ALA A 269 ILE A 273 -1 N ILE A 273 O GLN A 280 SHEET 3 D 4 VAL A 459 ILE A 462 1 O MET A 460 N TYR A 270 SHEET 4 D 4 GLY A 441 ARG A 444 -1 N ARG A 444 O VAL A 459 SHEET 1 E 2 VAL A 328 ASN A 332 0 SHEET 2 E 2 GLY A 348 LEU A 352 -1 O LEU A 352 N VAL A 328 SHEET 1 F 2 PHE A 336 ALA A 338 0 SHEET 2 F 2 PHE A 343 PHE A 345 -1 O PHE A 345 N PHE A 336 LINK O2 ZTP A 1 MN MN A 495 1555 1555 2.04 LINK O7 ZTP A 1 MN MN A 495 1555 1555 2.12 LINK OD2 ASP A 234 MN MN A 495 1555 1555 2.13 LINK OD2 ASP A 246 MN MN A 495 1555 1555 2.14 LINK MN MN A 495 O HOH A 750 1555 1555 2.20 LINK MN MN A 495 O HOH A 751 1555 1555 2.25 SITE 1 AC1 22 HOH A 53 ILE A 228 GLY A 232 ASP A 234 SITE 2 AC1 22 ASP A 246 MET A 251 LEU A 313 ASN A 314 SITE 3 AC1 22 PHE A 315 VAL A 361 ARG A 362 ARG A 364 SITE 4 AC1 22 ARG A 374 GLN A 378 LEU A 389 MET A 418 SITE 5 AC1 22 LEU A 421 TYR A 432 MN A 495 HOH A 623 SITE 6 AC1 22 HOH A 659 HOH A 750 SITE 1 AC2 5 ZTP A 1 ASP A 234 ASP A 246 HOH A 750 SITE 2 AC2 5 HOH A 751 SITE 1 AC3 2 LYS A 205 ASN A 397 SITE 1 AC4 6 HOH A 50 ARG A 364 GLU A 416 ILE A 419 SITE 2 AC4 6 ASN A 420 EDO A 502 SITE 1 AC5 6 SER A 337 ALA A 338 LEU A 339 HIS A 340 SITE 2 AC5 6 GLY A 341 GLU A 363 SITE 1 AC6 2 TYR A 270 PRO A 272 SITE 1 AC7 3 TYR A 432 HOH A 570 HOH A 678 SITE 1 AC8 3 HOH A 61 GLN A 410 THR A 411 SITE 1 AC9 7 ASP A 371 GLU A 416 TYR A 458 MET A 460 SITE 2 AC9 7 ACT A 497 HOH A 521 HOH A 557 CRYST1 73.681 73.681 163.661 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006110 0.00000