HEADER SIGNALING PROTEIN 15-AUG-11 3TF1 TITLE CRYSTAL STRUCTURE OF AN H-NOX PROTEIN FROM T. TENGCONGENSIS UNDER 6 TITLE 2 ATM OF XENON COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-188); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 3 TENGCONGENSIS; SOURCE 4 ORGANISM_TAXID: 119072; SOURCE 5 GENE: TAR4, TTE0680; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEME-BASED METHYL-ACCEPTING CHEMOTAXIS PROTEIN, GAS BINDING, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.B.WINTER,M.A.HERZIK JR.,J.KURIYAN,M.A.MARLETTA REVDAT 2 13-SEP-23 3TF1 1 REMARK LINK REVDAT 1 09-NOV-11 3TF1 0 JRNL AUTH M.B.WINTER,M.A.HERZIK,J.KURIYAN,M.A.MARLETTA JRNL TITL TUNNELS MODULATE LIGAND FLUX IN A HEME NITRIC OXIDE/OXYGEN JRNL TITL 2 BINDING (H-NOX) DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 E881 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21997213 JRNL DOI 10.1073/PNAS.1114038108 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 52372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8194 - 5.4318 0.99 2749 137 0.1841 0.2116 REMARK 3 2 5.4318 - 4.3127 1.00 2749 156 0.1516 0.1712 REMARK 3 3 4.3127 - 3.7679 1.00 2791 132 0.1507 0.1741 REMARK 3 4 3.7679 - 3.4236 0.99 2754 152 0.1912 0.2621 REMARK 3 5 3.4236 - 3.1783 0.99 2739 144 0.1992 0.2818 REMARK 3 6 3.1783 - 2.9909 0.99 2758 140 0.1807 0.1893 REMARK 3 7 2.9909 - 2.8412 0.99 2669 169 0.1688 0.2209 REMARK 3 8 2.8412 - 2.7175 0.98 2749 158 0.1842 0.2175 REMARK 3 9 2.7175 - 2.6129 0.97 2714 122 0.1796 0.2278 REMARK 3 10 2.6129 - 2.5228 0.97 2652 149 0.1748 0.2606 REMARK 3 11 2.5228 - 2.4439 0.96 2669 119 0.1904 0.2829 REMARK 3 12 2.4439 - 2.3740 0.96 2640 143 0.1728 0.2199 REMARK 3 13 2.3740 - 2.3115 0.94 2660 139 0.1861 0.2058 REMARK 3 14 2.3115 - 2.2552 0.94 2543 138 0.1780 0.2217 REMARK 3 15 2.2552 - 2.2039 0.93 2581 162 0.2067 0.2154 REMARK 3 16 2.2039 - 2.1570 0.91 2518 119 0.1981 0.2681 REMARK 3 17 2.1570 - 2.1138 0.89 2461 150 0.2237 0.2301 REMARK 3 18 2.1138 - 2.0740 0.87 2420 115 0.2235 0.3097 REMARK 3 19 2.0740 - 2.0369 0.70 1907 105 0.2423 0.2682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 39.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3291 REMARK 3 ANGLE : 1.517 4453 REMARK 3 CHIRALITY : 0.095 456 REMARK 3 PLANARITY : 0.008 559 REMARK 3 DIHEDRAL : 15.329 1260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:29) REMARK 3 ORIGIN FOR THE GROUP (A): 71.6535 -19.8263 44.3074 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.2252 REMARK 3 T33: 0.2220 T12: 0.0138 REMARK 3 T13: -0.0349 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.4990 L22: 0.2576 REMARK 3 L33: 0.5765 L12: -0.1162 REMARK 3 L13: 0.0576 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.0828 S13: 0.0959 REMARK 3 S21: 0.0872 S22: -0.0124 S23: -0.0542 REMARK 3 S31: 0.0311 S32: 0.1921 S33: 0.0425 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 30:44) REMARK 3 ORIGIN FOR THE GROUP (A): 67.0827 -27.5494 49.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.3693 T22: 0.2583 REMARK 3 T33: 0.2524 T12: 0.0293 REMARK 3 T13: -0.0130 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 4.0743 L22: 1.2282 REMARK 3 L33: 1.2203 L12: -1.0652 REMARK 3 L13: -0.5574 L23: -0.5634 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: -0.3040 S13: -0.5185 REMARK 3 S21: 0.1804 S22: -0.0630 S23: 0.1554 REMARK 3 S31: 0.2716 S32: 0.1172 S33: -0.0382 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 45:62) REMARK 3 ORIGIN FOR THE GROUP (A): 68.5167 -12.0734 49.2261 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.2128 REMARK 3 T33: 0.3491 T12: 0.0009 REMARK 3 T13: -0.1156 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 1.0504 L22: 0.2174 REMARK 3 L33: 0.3346 L12: 0.4078 REMARK 3 L13: 0.0279 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: -0.0629 S13: 0.4639 REMARK 3 S21: 0.3466 S22: 0.0827 S23: -0.0721 REMARK 3 S31: -0.2111 S32: -0.0017 S33: 0.0718 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 63:90) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4775 -19.5554 32.7156 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.1480 REMARK 3 T33: 0.1697 T12: -0.0030 REMARK 3 T13: -0.0162 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.8549 L22: 0.4154 REMARK 3 L33: 1.1805 L12: -0.0940 REMARK 3 L13: 0.4427 L23: -0.2433 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: 0.2098 S13: 0.2720 REMARK 3 S21: -0.1303 S22: -0.1621 S23: 0.0819 REMARK 3 S31: 0.0344 S32: 0.1834 S33: -0.0640 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:104) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6185 -22.3891 30.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.2194 REMARK 3 T33: 0.3083 T12: -0.0774 REMARK 3 T13: -0.0552 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.2588 L22: 0.4627 REMARK 3 L33: 0.9583 L12: -0.3267 REMARK 3 L13: -0.0127 L23: 0.1087 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0791 S13: -0.1168 REMARK 3 S21: -0.0545 S22: -0.1296 S23: 0.4632 REMARK 3 S31: 0.1441 S32: -0.2397 S33: -0.0218 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 105:123) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7409 -21.5038 38.6270 REMARK 3 T TENSOR REMARK 3 T11: 0.2419 T22: 0.1897 REMARK 3 T33: 0.2662 T12: 0.0025 REMARK 3 T13: 0.0004 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.5948 L22: 0.5921 REMARK 3 L33: 0.6648 L12: -0.3067 REMARK 3 L13: -0.2870 L23: 0.1585 REMARK 3 S TENSOR REMARK 3 S11: -0.3762 S12: -0.0040 S13: 0.0853 REMARK 3 S21: 0.2494 S22: -0.0050 S23: 0.3068 REMARK 3 S31: 0.0267 S32: -0.1096 S33: 0.0193 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 124:137) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5757 -11.7890 35.1623 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.2201 REMARK 3 T33: 0.3047 T12: -0.0147 REMARK 3 T13: -0.0776 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.4747 L22: 0.3149 REMARK 3 L33: 1.8153 L12: -0.2118 REMARK 3 L13: 0.3267 L23: 0.2235 REMARK 3 S TENSOR REMARK 3 S11: -0.1634 S12: -0.0621 S13: 0.3304 REMARK 3 S21: 0.0600 S22: 0.0901 S23: 0.3300 REMARK 3 S31: 0.0032 S32: -0.1325 S33: 0.0504 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 138:152) REMARK 3 ORIGIN FOR THE GROUP (A): 59.8294 -13.3716 31.3657 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1448 REMARK 3 T33: 0.1798 T12: 0.0117 REMARK 3 T13: -0.0599 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.4040 L22: 0.3020 REMARK 3 L33: 2.0770 L12: -0.1446 REMARK 3 L13: 0.0146 L23: -0.3080 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: 0.1271 S13: 0.2984 REMARK 3 S21: -0.0057 S22: -0.0755 S23: -0.0402 REMARK 3 S31: 0.1909 S32: 0.1137 S33: 0.0295 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 153:165) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8392 -6.6733 29.6872 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.2274 REMARK 3 T33: 0.3197 T12: -0.0028 REMARK 3 T13: -0.1370 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.6605 L22: 0.5434 REMARK 3 L33: 1.2361 L12: 0.2601 REMARK 3 L13: 0.3000 L23: -0.5677 REMARK 3 S TENSOR REMARK 3 S11: -0.2890 S12: 0.1341 S13: 0.4858 REMARK 3 S21: -0.0521 S22: 0.0035 S23: 0.1554 REMARK 3 S31: 0.0317 S32: 0.0797 S33: 0.1006 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 166:178) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6961 -8.4043 34.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.1834 REMARK 3 T33: 0.4240 T12: -0.0003 REMARK 3 T13: -0.0748 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.1344 L22: 0.6848 REMARK 3 L33: 0.5357 L12: -0.0341 REMARK 3 L13: 0.0592 L23: 0.5678 REMARK 3 S TENSOR REMARK 3 S11: -0.1658 S12: 0.0164 S13: 0.0562 REMARK 3 S21: -0.0365 S22: -0.1388 S23: 0.5770 REMARK 3 S31: -0.1748 S32: -0.1127 S33: 0.1395 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 179:188) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6550 -15.5664 15.9847 REMARK 3 T TENSOR REMARK 3 T11: 0.4033 T22: 0.5213 REMARK 3 T33: 0.4417 T12: -0.2078 REMARK 3 T13: -0.3243 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 0.5034 L22: 0.3299 REMARK 3 L33: 0.7285 L12: -0.1182 REMARK 3 L13: 0.2911 L23: 0.1800 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.0614 S13: -0.1065 REMARK 3 S21: -0.0354 S22: 0.2334 S23: 0.1661 REMARK 3 S31: 0.1820 S32: 0.0037 S33: 0.0522 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:29) REMARK 3 ORIGIN FOR THE GROUP (A): 73.5978 19.0228 32.6449 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.2851 REMARK 3 T33: 0.2408 T12: -0.0079 REMARK 3 T13: 0.0336 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.3388 L22: 0.1862 REMARK 3 L33: 0.5714 L12: -0.1116 REMARK 3 L13: 0.6300 L23: 0.0904 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: 0.3304 S13: 0.0660 REMARK 3 S21: -0.1271 S22: 0.0623 S23: -0.0043 REMARK 3 S31: -0.0872 S32: 0.1706 S33: -0.0005 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 30:44) REMARK 3 ORIGIN FOR THE GROUP (A): 68.8506 26.2377 26.2479 REMARK 3 T TENSOR REMARK 3 T11: 0.4517 T22: 0.4879 REMARK 3 T33: 0.4324 T12: -0.0252 REMARK 3 T13: -0.0948 T23: 0.2232 REMARK 3 L TENSOR REMARK 3 L11: 1.2487 L22: 0.8330 REMARK 3 L33: 1.2206 L12: -0.1742 REMARK 3 L13: 1.1894 L23: -0.4191 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.3863 S13: 0.1405 REMARK 3 S21: -0.2858 S22: -0.0558 S23: 0.0179 REMARK 3 S31: -0.0325 S32: 0.2651 S33: 0.0610 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 45:81) REMARK 3 ORIGIN FOR THE GROUP (A): 69.5557 13.3391 35.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.2587 REMARK 3 T33: 0.2125 T12: 0.0063 REMARK 3 T13: 0.0368 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.3312 L22: 0.5855 REMARK 3 L33: 0.5917 L12: 0.0007 REMARK 3 L13: -0.2744 L23: 0.0529 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: 0.1554 S13: -0.0373 REMARK 3 S21: -0.0912 S22: 0.1101 S23: -0.2899 REMARK 3 S31: 0.0182 S32: 0.2991 S33: -0.0197 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 82:106) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5175 23.5671 46.9407 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.1153 REMARK 3 T33: 0.3484 T12: 0.0325 REMARK 3 T13: 0.0116 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 0.8240 L22: 0.4028 REMARK 3 L33: 0.4743 L12: 0.3708 REMARK 3 L13: 0.0624 L23: 0.1223 REMARK 3 S TENSOR REMARK 3 S11: -0.1564 S12: -0.2026 S13: 0.3519 REMARK 3 S21: -0.1511 S22: -0.0622 S23: 0.6432 REMARK 3 S31: -0.3071 S32: -0.1162 S33: -0.0448 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 107:137) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8380 14.7204 40.3812 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.2020 REMARK 3 T33: 0.2890 T12: -0.0134 REMARK 3 T13: 0.0353 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.2842 L22: 0.6823 REMARK 3 L33: 1.1418 L12: -0.0803 REMARK 3 L13: 0.1501 L23: 0.2207 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0922 S13: 0.0368 REMARK 3 S21: -0.0262 S22: -0.2278 S23: 0.5513 REMARK 3 S31: -0.1034 S32: -0.0948 S33: 0.0659 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 138:178) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5420 8.6093 45.4597 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.1303 REMARK 3 T33: 0.2147 T12: -0.0118 REMARK 3 T13: 0.0277 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.4083 L22: 0.9370 REMARK 3 L33: 0.5780 L12: -0.2655 REMARK 3 L13: -0.2191 L23: -0.2044 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.1073 S13: -0.1519 REMARK 3 S21: 0.2457 S22: -0.0774 S23: 0.3343 REMARK 3 S31: 0.0005 S32: 0.0199 S33: 0.0468 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 179:188) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5297 15.2555 61.4569 REMARK 3 T TENSOR REMARK 3 T11: 0.4420 T22: 0.7025 REMARK 3 T33: 0.4209 T12: -0.2519 REMARK 3 T13: 0.4480 T23: -0.1496 REMARK 3 L TENSOR REMARK 3 L11: 0.1500 L22: 0.0594 REMARK 3 L33: 0.0879 L12: -0.0097 REMARK 3 L13: -0.0248 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0486 S13: 0.0550 REMARK 3 S21: 0.0720 S22: -0.0256 S23: 0.1142 REMARK 3 S31: -0.0626 S32: 0.0555 S33: -0.0625 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TF0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-28% PEG 200, 200-250 MM SODIUM REMARK 280 ACETATE PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.06400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.06400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 179 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 76 CE NZ REMARK 480 LYS A 110 CD CE NZ REMARK 480 LYS A 124 CG CD CE NZ REMARK 480 LYS A 134 CD CE NZ REMARK 480 LYS A 150 CD CE NZ REMARK 480 LYS A 166 CD CE NZ REMARK 480 ASP A 167 OD1 OD2 REMARK 480 LYS A 186 CD CE NZ REMARK 480 LEU B 40 CG CD1 CD2 REMARK 480 LYS B 54 NZ REMARK 480 LYS B 58 CE NZ REMARK 480 GLU B 100 CG CD OE1 OE2 REMARK 480 MET B 108 CG SD CE REMARK 480 LYS B 110 CG CD CE NZ REMARK 480 LYS B 120 CD CE NZ REMARK 480 LYS B 124 CD CE NZ REMARK 480 LYS B 134 CG CD CE NZ REMARK 480 LYS B 179 CD CE NZ REMARK 480 LYS B 186 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 87 116.19 -37.79 REMARK 500 MET A 137 61.54 -101.44 REMARK 500 ALA B 87 114.96 -36.89 REMARK 500 MET B 137 62.15 -104.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEM A 500 NA 85.6 REMARK 620 3 HEM A 500 NB 90.8 89.3 REMARK 620 4 HEM A 500 NC 91.6 176.7 89.0 REMARK 620 5 HEM A 500 ND 85.9 89.6 176.6 92.0 REMARK 620 6 OXY A 501 O1 178.5 94.0 90.6 88.9 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 503 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 102 NE2 REMARK 620 2 HEM B 503 NA 88.0 REMARK 620 3 HEM B 503 NB 86.6 89.2 REMARK 620 4 HEM B 503 NC 88.6 175.7 88.2 REMARK 620 5 HEM B 503 ND 89.6 90.8 176.2 91.6 REMARK 620 6 OXY B 504 O2 176.8 94.6 95.2 88.9 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE B 190 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U4H RELATED DB: PDB REMARK 900 RELATED ID: 1U55 RELATED DB: PDB REMARK 900 RELATED ID: 1U56 RELATED DB: PDB REMARK 900 RELATED ID: 3TF0 RELATED DB: PDB REMARK 900 RELATED ID: 3TF8 RELATED DB: PDB REMARK 900 RELATED ID: 3TF9 RELATED DB: PDB REMARK 900 RELATED ID: 3TFA RELATED DB: PDB REMARK 900 RELATED ID: 3TFD RELATED DB: PDB REMARK 900 RELATED ID: 3TFE RELATED DB: PDB REMARK 900 RELATED ID: 3TFF RELATED DB: PDB REMARK 900 RELATED ID: 3TFG RELATED DB: PDB DBREF 3TF1 A 1 188 UNP Q8RBX6 Q8RBX6_THETN 1 188 DBREF 3TF1 B 1 188 UNP Q8RBX6 Q8RBX6_THETN 1 188 SEQRES 1 A 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 A 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 A 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 A 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 A 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 A 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 A 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 A 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 A 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 A 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 A 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 A 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 A 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 A 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 A 188 PHE GLU TYR LYS LYS ASN SEQRES 1 B 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 B 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 B 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 B 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 B 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 B 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 B 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 B 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 B 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 B 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 B 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 B 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 B 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 B 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 B 188 PHE GLU TYR LYS LYS ASN HET HEM A 500 73 HET OXY A 501 2 HET XE A 189 1 HET XE A 190 1 HET ACT A 191 7 HET HEM B 503 73 HET OXY B 504 2 HET XE B 189 1 HET XE B 190 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETNAM XE XENON HETNAM ACT ACETATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 OXY 2(O2) FORMUL 5 XE 4(XE) FORMUL 7 ACT C2 H3 O2 1- FORMUL 12 HOH *145(H2 O) HELIX 1 1 LYS A 2 GLY A 18 1 17 HELIX 2 2 GLY A 18 VAL A 29 1 12 HELIX 3 3 ASP A 44 GLY A 60 1 17 HELIX 4 4 ASN A 62 PHE A 82 1 21 HELIX 5 5 PRO A 83 PHE A 86 5 4 HELIX 6 6 ARG A 90 LEU A 105 1 16 HELIX 7 7 MET A 137 LYS A 153 1 17 HELIX 8 8 LYS B 2 GLY B 18 1 17 HELIX 9 9 GLY B 18 VAL B 29 1 12 HELIX 10 10 ASP B 44 GLY B 60 1 17 HELIX 11 11 ASN B 62 PHE B 82 1 21 HELIX 12 12 PRO B 83 PHE B 86 5 4 HELIX 13 13 ARG B 90 MET B 97 1 8 HELIX 14 14 MET B 97 LYS B 107 1 11 HELIX 15 15 MET B 137 LYS B 153 1 17 SHEET 1 A 8 ARG A 116 ALA A 123 0 SHEET 2 A 8 ALA A 126 SER A 133 -1 O VAL A 132 N ARG A 116 SHEET 3 A 8 PHE A 169 PHE A 178 -1 O ILE A 176 N ILE A 127 SHEET 4 A 8 ILE A 156 LYS A 166 -1 N SER A 157 O LYS A 177 SHEET 5 A 8 ILE B 156 LYS B 166 -1 O ARG B 163 N ARG A 163 SHEET 6 A 8 PHE B 169 PHE B 178 -1 O LYS B 173 N VAL B 161 SHEET 7 A 8 ALA B 126 SER B 133 -1 N ILE B 127 O ILE B 176 SHEET 8 A 8 ARG B 116 ALA B 123 -1 N LYS B 120 O GLU B 128 LINK NE2 HIS A 102 FE HEM A 500 1555 1555 2.04 LINK FE HEM A 500 O1 OXY A 501 1555 1555 2.00 LINK NE2 HIS B 102 FE HEM B 503 1555 1555 2.03 LINK FE HEM B 503 O2 OXY B 504 1555 1555 1.97 SITE 1 AC1 20 MET A 1 LYS A 2 ILE A 5 PHE A 78 SITE 2 AC1 20 TYR A 85 MET A 98 HIS A 102 LEU A 105 SITE 3 AC1 20 THR A 113 PRO A 114 MET A 129 TYR A 131 SITE 4 AC1 20 SER A 133 ARG A 135 MET A 137 TYR A 140 SITE 5 AC1 20 LEU A 144 HOH A 192 HOH A 214 OXY A 501 SITE 1 AC2 4 ILE A 5 PHE A 78 TYR A 140 HEM A 500 SITE 1 AC3 7 LYS A 2 THR A 4 PHE A 82 LEU A 105 SITE 2 AC3 7 HOH A 269 SER B 84 HOH B 199 SITE 1 AC4 20 MET B 1 LYS B 2 ILE B 5 PHE B 78 SITE 2 AC4 20 TYR B 85 MET B 98 HIS B 102 LEU B 105 SITE 3 AC4 20 THR B 113 PRO B 114 LEU B 117 TYR B 131 SITE 4 AC4 20 SER B 133 ARG B 135 MET B 137 TYR B 140 SITE 5 AC4 20 LEU B 144 HOH B 191 HOH B 245 OXY B 504 SITE 1 AC5 4 PHE B 78 TYR B 140 LEU B 144 HEM B 503 SITE 1 AC6 1 ILE B 10 CRYST1 80.128 130.214 42.810 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023359 0.00000