HEADER IMMUNE SYSTEM 15-AUG-11 3TFK TITLE 42F3-P4B10/H2-LD COMPND MOL_ID: 1; COMPND 2 MOLECULE: H2-LD SBM2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P4B10 PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 42F3 ALPHA; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: MOUSE-HUMAN CHIMERA ALPHA CHAIN; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: 42F3 BETA; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: MOUSE-HUMAN CHIMERA BETA CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: GENSCRIPT; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 10090, 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 10090, 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS IG MHC, ANTIGEN RECOGNITION, TCR-PMHC, CHIMERA PROTEIN, MEMBRANE KEYWDS 2 RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ADAMS,D.M.KRANZ,K.C.GARCIA REVDAT 3 13-SEP-23 3TFK 1 REMARK REVDAT 2 18-JAN-12 3TFK 1 JRNL REVDAT 1 07-DEC-11 3TFK 0 JRNL AUTH J.J.ADAMS,S.NARAYANAN,B.LIU,M.E.BIRNBAUM,A.C.KRUSE, JRNL AUTH 2 N.A.BOWERMAN,W.CHEN,A.M.LEVIN,J.M.CONNOLLY,C.ZHU,D.M.KRANZ, JRNL AUTH 3 K.C.GARCIA JRNL TITL T CELL RECEPTOR SIGNALING IS LIMITED BY DOCKING GEOMETRY TO JRNL TITL 2 PEPTIDE-MAJOR HISTOCOMPATIBILITY COMPLEX. JRNL REF IMMUNITY V. 35 681 2011 JRNL REFN ISSN 1074-7613 JRNL PMID 22101157 JRNL DOI 10.1016/J.IMMUNI.2011.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.3_473) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4280 - 5.9283 0.99 2790 143 0.2239 0.2439 REMARK 3 2 5.9283 - 4.7065 1.00 2638 118 0.2022 0.2803 REMARK 3 3 4.7065 - 4.1119 1.00 2524 161 0.2001 0.2469 REMARK 3 4 4.1119 - 3.7361 1.00 2539 143 0.2456 0.2711 REMARK 3 5 3.7361 - 3.4684 1.00 2516 124 0.2577 0.3203 REMARK 3 6 3.4684 - 3.2639 1.00 2507 131 0.2753 0.3283 REMARK 3 7 3.2639 - 3.1005 1.00 2474 134 0.3079 0.3537 REMARK 3 8 3.1005 - 2.9655 1.00 2475 138 0.3279 0.3761 REMARK 3 9 2.9655 - 2.8514 1.00 2462 142 0.3675 0.4071 REMARK 3 10 2.8514 - 2.7530 1.00 2488 114 0.4565 0.5092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 41.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88260 REMARK 3 B22 (A**2) : 1.88260 REMARK 3 B33 (A**2) : -3.76520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5109 REMARK 3 ANGLE : 0.621 6930 REMARK 3 CHIRALITY : 0.045 721 REMARK 3 PLANARITY : 0.002 910 REMARK 3 DIHEDRAL : 13.298 1841 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 80.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TF7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.2M AMMONIUM NITRATE REMARK 280 AND 0.1M BIS-TRIS PH 6.6 IN A 1:1 (V/V) DROP WITH THE TCR-PMHC REMARK 280 COMPLEX. CRYSTALS WERE SOAKED STEPWISE INTO WELL SOLUTION WITH REMARK 280 20% ETHYLENE GLYCOL AND FLASH FROZEN IN LIQUID NITROGEN, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.69367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 215.38733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.54050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 269.23417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.84683 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.69367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 215.38733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 269.23417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 161.54050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.84683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 51.04500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -88.41253 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.84683 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 176 REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 LEU A 179 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 HIS C -2 REMARK 465 MET C -1 REMARK 465 PHE C 201 REMARK 465 PRO C 202 REMARK 465 SER C 203 REMARK 465 PRO C 204 REMARK 465 GLU C 205 REMARK 465 SER C 206 REMARK 465 SER C 207 REMARK 465 MET D -1 REMARK 465 GLY D 0 REMARK 465 GLU D 1 REMARK 465 ALA D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 180 O HOH A 182 2.05 REMARK 500 O MET A 5 O HOH A 181 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -161.23 -105.87 REMARK 500 PRO A 20 173.52 -55.79 REMARK 500 ASP A 30 -9.88 86.97 REMARK 500 TYR A 123 -79.90 -108.88 REMARK 500 ASN A 127 -177.15 -67.20 REMARK 500 VAL B 5 129.73 -39.29 REMARK 500 ARG C 40 18.65 57.46 REMARK 500 TYR C 50 -51.05 -124.49 REMARK 500 PHE C 73 59.85 -147.80 REMARK 500 ALA C 86 -177.26 -174.11 REMARK 500 ASN C 117 60.49 -118.00 REMARK 500 LYS C 129 -77.99 -84.20 REMARK 500 LYS C 133 117.32 -38.38 REMARK 500 SER C 153 -12.93 80.74 REMARK 500 ASP C 159 159.61 -49.87 REMARK 500 ASP C 169 64.70 36.84 REMARK 500 PHE C 184 132.13 -173.55 REMARK 500 ILE D 46 -64.03 -94.78 REMARK 500 PRO D 173 -166.87 -66.13 REMARK 500 ASP D 182 65.92 -110.06 REMARK 500 THR D 221 61.29 -118.83 REMARK 500 ASP D 223 49.87 -84.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 D 242 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OI9 RELATED DB: PDB REMARK 900 2C QL9/H2-LD COMPLEX REMARK 900 RELATED ID: 3TF7 RELATED DB: PDB REMARK 900 RELATED ID: 3TJH RELATED DB: PDB REMARK 900 RELATED ID: 3TPU RELATED DB: PDB DBREF 3TFK A 0 179 PDB 3TFK 3TFK 0 179 DBREF 3TFK B 1 9 PDB 3TFK 3TFK 1 9 DBREF 3TFK C -4 207 PDB 3TFK 3TFK -4 207 DBREF 3TFK D -1 241 PDB 3TFK 3TFK -1 241 SEQRES 1 A 180 MET GLY PRO HIS SER MET ARG TYR TYR GLU THR ALA THR SEQRES 2 A 180 SER ARG ARG GLY LEU GLY GLU PRO ARG TYR THR SER VAL SEQRES 3 A 180 GLY TYR VAL ASP ASP LYS GLU PHE VAL ARG PHE ASP SER SEQRES 4 A 180 ASP ALA GLU ASN PRO ARG TYR GLU PRO GLN VAL PRO TRP SEQRES 5 A 180 MET GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG ILE THR SEQRES 6 A 180 GLN VAL ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL ASN SEQRES 7 A 180 LEU ARG THR LEU LEU GLY TYR TYR ASN GLN SER ALA GLY SEQRES 8 A 180 GLY THR HIS THR LEU GLN ARG MET TYR GLY CYS ASP VAL SEQRES 9 A 180 GLY SER ASP GLY ARG LEU LEU ARG GLY TYR GLU GLN PHE SEQRES 10 A 180 ALA TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 A 180 LEU ARG THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 A 180 THR ARG ARG LYS TRP GLU GLN ALA GLY ALA ALA GLU TYR SEQRES 13 A 180 TYR ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU SEQRES 14 A 180 HIS ARG TYR LEU LYS ASN GLY ASN ALA THR LEU SEQRES 1 B 9 GLN LEU SER ASP VAL PRO MET ASP LEU SEQRES 1 C 212 GLY SER HIS MET ALA GLN SER VAL THR GLN PRO ASP ALA SEQRES 2 C 212 ARG VAL THR VAL SER GLU GLY ALA SER LEU GLN LEU ARG SEQRES 3 C 212 CYS LYS TYR SER TYR SER ALA THR PRO TYR LEU PHE TRP SEQRES 4 C 212 TYR VAL GLN TYR PRO ARG GLN GLY LEU GLN MET LEU LEU SEQRES 5 C 212 LYS TYR TYR SER GLY ASP PRO VAL VAL GLN GLY VAL ASN SEQRES 6 C 212 GLY PHE GLU ALA GLU PHE SER LYS SER ASP SER SER PHE SEQRES 7 C 212 HIS LEU ARG LYS ALA SER VAL HIS TRP SER ASP SER ALA SEQRES 8 C 212 VAL TYR PHE CYS ALA VAL SER ALA LYS GLY THR GLY SER SEQRES 9 C 212 LYS LEU SER PHE GLY LYS GLY ALA LYS LEU THR VAL SER SEQRES 10 C 212 PRO ASN ILE GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU SEQRES 11 C 212 ARG ASP SER LYS SER SER ASP LYS SER VAL CYS LEU PHE SEQRES 12 C 212 THR ASP PHE ASP SER GLN THR ASN VAL SER GLN SER LYS SEQRES 13 C 212 ASP SER ASP VAL TYR ILE THR ASP LYS CYS VAL LEU ASP SEQRES 14 C 212 MET ARG SER MET ASP PHE LYS SER ASN SER ALA VAL ALA SEQRES 15 C 212 TRP SER ASN LYS SER ASP PHE ALA CYS ALA ASN ALA PHE SEQRES 16 C 212 ASN ASN SER ILE ILE PRO GLU ASP THR PHE PHE PRO SER SEQRES 17 C 212 PRO GLU SER SER SEQRES 1 D 243 MET GLY GLU ALA ALA VAL THR GLN SER PRO ARG ASN LYS SEQRES 2 D 243 VAL THR VAL THR GLY GLY ASN VAL THR LEU SER CYS ARG SEQRES 3 D 243 GLN THR ASN SER HIS ASN TYR MET TYR TRP TYR ARG GLN SEQRES 4 D 243 ASP THR GLY HIS GLY LEU ARG LEU ILE HIS TYR SER TYR SEQRES 5 D 243 GLY ALA GLY ASN LEU GLN ILE GLY ASP VAL PRO ASP GLY SEQRES 6 D 243 TYR LYS ALA THR ARG THR THR GLN GLU ASP PHE PHE LEU SEQRES 7 D 243 LEU LEU GLU LEU ALA SER PRO SER GLN THR SER LEU TYR SEQRES 8 D 243 PHE CYS ALA SER SER ASP ALA PRO GLY GLN LEU TYR PHE SEQRES 9 D 243 GLY GLU GLY SER LYS LEU THR VAL LEU GLU ASP LEU LYS SEQRES 10 D 243 ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER SEQRES 11 D 243 GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL SEQRES 12 D 243 CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SEQRES 13 D 243 SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL SEQRES 14 D 243 CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU SEQRES 15 D 243 ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SEQRES 16 D 243 SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG SEQRES 17 D 243 CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU SEQRES 18 D 243 TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SEQRES 19 D 243 SER ALA GLU ALA TRP GLY ARG ALA ASP HET NO3 D 242 4 HETNAM NO3 NITRATE ION FORMUL 5 NO3 N O3 1- FORMUL 6 HOH *6(H2 O) HELIX 1 1 PRO A 50 GLU A 55 5 6 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ALA A 139 GLY A 151 1 13 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 LYS A 173 1 12 HELIX 6 6 HIS C 81 SER C 85 5 5 HELIX 7 7 ARG C 166 ASP C 169 5 4 HELIX 8 8 SER D 82 THR D 86 5 5 HELIX 9 9 ASP D 113 VAL D 117 5 5 HELIX 10 10 SER D 128 GLN D 136 1 9 HELIX 11 11 ALA D 195 GLN D 199 1 5 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 4 A 8 MET A 5 THR A 12 -1 N THR A 10 O THR A 23 SHEET 5 A 8 THR A 94 VAL A 103 -1 O ARG A 97 N GLU A 9 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 A 8 CYS A 121 LEU A 126 -1 O LEU A 126 N GLU A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 2 VAL C 3 THR C 4 0 SHEET 2 B 2 LYS C 23 TYR C 24 -1 O LYS C 23 N THR C 4 SHEET 1 C 5 ARG C 9 SER C 13 0 SHEET 2 C 5 ALA C 107 SER C 112 1 O THR C 110 N VAL C 10 SHEET 3 C 5 ALA C 86 ALA C 94 -1 N ALA C 86 O LEU C 109 SHEET 4 C 5 PRO C 30 GLN C 37 -1 N TYR C 35 O PHE C 89 SHEET 5 C 5 GLN C 44 TYR C 49 -1 O LEU C 46 N TRP C 34 SHEET 1 D 4 ARG C 9 SER C 13 0 SHEET 2 D 4 ALA C 107 SER C 112 1 O THR C 110 N VAL C 10 SHEET 3 D 4 ALA C 86 ALA C 94 -1 N ALA C 86 O LEU C 109 SHEET 4 D 4 SER C 102 PHE C 103 -1 O SER C 102 N VAL C 92 SHEET 1 E 4 LEU C 18 LEU C 20 0 SHEET 2 E 4 SER C 72 LYS C 77 -1 O LEU C 75 N LEU C 20 SHEET 3 E 4 PHE C 62 SER C 67 -1 N GLU C 63 O ARG C 76 SHEET 4 E 4 VAL C 55 GLN C 57 -1 N VAL C 56 O ALA C 64 SHEET 1 F 8 TYR C 156 THR C 158 0 SHEET 2 F 8 SER C 174 TRP C 178 -1 O TRP C 178 N TYR C 156 SHEET 3 F 8 SER C 134 THR C 139 -1 N PHE C 138 O ALA C 175 SHEET 4 F 8 ALA C 121 ASP C 127 -1 N LEU C 125 O VAL C 135 SHEET 5 F 8 GLU D 121 GLU D 126 -1 O GLU D 126 N ARG C 126 SHEET 6 F 8 LYS D 137 PHE D 147 -1 O VAL D 141 N PHE D 125 SHEET 7 F 8 TYR D 185 SER D 194 -1 O VAL D 193 N ALA D 138 SHEET 8 F 8 VAL D 167 THR D 169 -1 N CYS D 168 O ARG D 190 SHEET 1 G 8 TYR C 156 THR C 158 0 SHEET 2 G 8 SER C 174 TRP C 178 -1 O TRP C 178 N TYR C 156 SHEET 3 G 8 SER C 134 THR C 139 -1 N PHE C 138 O ALA C 175 SHEET 4 G 8 ALA C 121 ASP C 127 -1 N LEU C 125 O VAL C 135 SHEET 5 G 8 GLU D 121 GLU D 126 -1 O GLU D 126 N ARG C 126 SHEET 6 G 8 LYS D 137 PHE D 147 -1 O VAL D 141 N PHE D 125 SHEET 7 G 8 TYR D 185 SER D 194 -1 O VAL D 193 N ALA D 138 SHEET 8 G 8 LEU D 174 LYS D 175 -1 N LEU D 174 O ALA D 186 SHEET 1 H 2 LEU C 163 MET C 165 0 SHEET 2 H 2 PHE C 170 SER C 172 -1 O SER C 172 N LEU C 163 SHEET 1 I 4 VAL D 4 SER D 7 0 SHEET 2 I 4 VAL D 19 GLN D 25 -1 O SER D 22 N SER D 7 SHEET 3 I 4 ASP D 73 LEU D 78 -1 O LEU D 78 N VAL D 19 SHEET 4 I 4 LYS D 65 THR D 67 -1 N LYS D 65 O LEU D 77 SHEET 1 J 6 ASN D 10 VAL D 14 0 SHEET 2 J 6 SER D 106 LEU D 111 1 O LEU D 111 N THR D 13 SHEET 3 J 6 SER D 87 ALA D 96 -1 N TYR D 89 O SER D 106 SHEET 4 J 6 TYR D 31 ASP D 38 -1 N TYR D 35 O PHE D 90 SHEET 5 J 6 GLY D 42 TYR D 50 -1 O ILE D 46 N TRP D 34 SHEET 6 J 6 GLN D 56 ILE D 57 -1 O GLN D 56 N TYR D 48 SHEET 1 K 4 ASN D 10 VAL D 14 0 SHEET 2 K 4 SER D 106 LEU D 111 1 O LEU D 111 N THR D 13 SHEET 3 K 4 SER D 87 ALA D 96 -1 N TYR D 89 O SER D 106 SHEET 4 K 4 GLN D 99 PHE D 102 -1 O TYR D 101 N SER D 93 SHEET 1 L 4 LYS D 161 VAL D 163 0 SHEET 2 L 4 VAL D 152 VAL D 158 -1 N VAL D 158 O LYS D 161 SHEET 3 L 4 HIS D 204 PHE D 211 -1 O GLN D 208 N SER D 155 SHEET 4 L 4 GLN D 230 TRP D 237 -1 O GLN D 230 N PHE D 211 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS C 22 CYS C 90 1555 1555 2.03 SSBOND 3 CYS C 161 CYS D 168 1555 1555 2.03 SSBOND 4 CYS D 23 CYS D 91 1555 1555 2.03 SSBOND 5 CYS D 142 CYS D 207 1555 1555 2.03 CISPEP 1 SER D 7 PRO D 8 0 0.37 CISPEP 2 TYR D 148 PRO D 149 0 6.33 SITE 1 AC1 7 GLU A 148 GLN A 149 TRP D 157 ASN D 159 SITE 2 AC1 7 GLY D 160 HIS D 204 ARG D 206 CRYST1 102.090 102.090 323.081 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009795 0.005655 0.000000 0.00000 SCALE2 0.000000 0.011311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003095 0.00000