HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-AUG-11 3TFU TITLE CRYSTAL STRUCTURE OF 7,8-DIAMINOPELARGONIC ACID SYNTHASE (BIOA) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS, POST-REACTION COMPLEX WITH A 3,6- TITLE 3 DIHYDROPYRID-2-ONE HETEROCYCLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE, DAPA AT, DAPA COMPND 5 AMINOTRANSFERASE, 7,8-DIAMINONONANOATE SYNTHASE, DANS, COMPND 6 DIAMINOPELARGONIC ACID SYNTHASE; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: BIOA, MT1619, MTCY336.35C, RV1568; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.W.GEDERS,B.C.FINZEL REVDAT 3 13-SEP-23 3TFU 1 REMARK SEQADV REVDAT 2 23-NOV-11 3TFU 1 JRNL REVDAT 1 19-OCT-11 3TFU 0 JRNL AUTH C.SHI,T.W.GEDERS,S.W.PARK,D.J.WILSON,H.I.BOSHOFF,O.ABAYOMI, JRNL AUTH 2 C.E.BARRY,D.SCHNAPPINGER,B.C.FINZEL,C.C.ALDRICH JRNL TITL MECHANISM-BASED INACTIVATION BY AROMATIZATION OF THE JRNL TITL 2 TRANSAMINASE BIOA INVOLVED IN BIOTIN BIOSYNTHESIS IN JRNL TITL 3 MYCOBATERIUM TUBERCULOSIS. JRNL REF J.AM.CHEM.SOC. V. 133 18194 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21988601 JRNL DOI 10.1021/JA204036T REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 62254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2317 - 5.5009 0.78 2235 98 0.2346 0.2544 REMARK 3 2 5.5009 - 4.3681 0.92 2482 124 0.1736 0.1846 REMARK 3 3 4.3681 - 3.8164 0.96 2581 127 0.1548 0.1952 REMARK 3 4 3.8164 - 3.4677 0.99 2628 146 0.1607 0.1718 REMARK 3 5 3.4677 - 3.2193 1.00 2631 151 0.1727 0.2029 REMARK 3 6 3.2193 - 3.0296 1.00 2596 159 0.1781 0.2064 REMARK 3 7 3.0296 - 2.8779 1.00 2601 158 0.1849 0.2129 REMARK 3 8 2.8779 - 2.7527 1.00 2626 124 0.1765 0.1851 REMARK 3 9 2.7527 - 2.6467 1.00 2591 151 0.1748 0.2138 REMARK 3 10 2.6467 - 2.5554 1.00 2608 142 0.1861 0.2116 REMARK 3 11 2.5554 - 2.4755 1.00 2620 127 0.1798 0.2368 REMARK 3 12 2.4755 - 2.4048 1.00 2577 133 0.1850 0.2279 REMARK 3 13 2.4048 - 2.3415 1.00 2605 130 0.1781 0.2210 REMARK 3 14 2.3415 - 2.2843 1.00 2586 132 0.1735 0.2239 REMARK 3 15 2.2843 - 2.2324 1.00 2588 126 0.1809 0.2434 REMARK 3 16 2.2324 - 2.1849 1.00 2594 151 0.1809 0.2277 REMARK 3 17 2.1849 - 2.1412 1.00 2574 134 0.1879 0.2331 REMARK 3 18 2.1412 - 2.1008 0.99 2567 152 0.1883 0.2522 REMARK 3 19 2.1008 - 2.0633 0.99 2559 132 0.1915 0.2278 REMARK 3 20 2.0633 - 2.0283 0.99 2557 131 0.1887 0.2357 REMARK 3 21 2.0283 - 1.9956 1.00 2570 141 0.1956 0.2665 REMARK 3 22 1.9956 - 1.9649 1.00 2561 146 0.2112 0.2495 REMARK 3 23 1.9649 - 1.9400 0.99 2555 147 0.2224 0.2818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 48.41 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27950 REMARK 3 B22 (A**2) : 1.46290 REMARK 3 B33 (A**2) : -0.18340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6482 REMARK 3 ANGLE : 0.836 8876 REMARK 3 CHIRALITY : 0.057 1021 REMARK 3 PLANARITY : 0.003 1140 REMARK 3 DIHEDRAL : 12.377 2268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.8.0W9R REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.9.8.0W9R REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 39.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.660 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.49 REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3TFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 25 MM HEPES PH 7.5, 50 MM REMARK 280 NACL, 0.1 MM TCEP RESERVOIR:9% PEG 8000, 0.1M MAGNESIUM CHLORIDE, REMARK 280 0.1M HEPES PH 7.5 CRYO: 15% PEG 400 IN RESERVOIR SOLUTION , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.30800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.63950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.15600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.63950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.30800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.15600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 172 REMARK 465 GLY A 173 REMARK 465 MET A 174 REMARK 465 HIS A 175 REMARK 465 SER A 176 REMARK 465 LEU A 177 REMARK 465 TRP A 178 REMARK 465 THR A 179 REMARK 465 ASP A 180 REMARK 465 VAL A 181 REMARK 465 GLY A 434 REMARK 465 SER A 435 REMARK 465 LEU A 436 REMARK 465 PRO A 437 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 29 REMARK 465 ARG B 30 REMARK 465 GLU B 31 REMARK 465 ALA B 32 REMARK 465 VAL B 33 REMARK 465 GLY B 172 REMARK 465 GLY B 173 REMARK 465 MET B 174 REMARK 465 HIS B 175 REMARK 465 SER B 176 REMARK 465 LEU B 177 REMARK 465 TRP B 178 REMARK 465 THR B 179 REMARK 465 ASP B 180 REMARK 465 VAL B 181 REMARK 465 GLY B 434 REMARK 465 SER B 435 REMARK 465 LEU B 436 REMARK 465 PRO B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 633 O HOH A 639 1.72 REMARK 500 OE2 GLU A 31 O HOH A 545 1.91 REMARK 500 O HOH A 673 O HOH B 803 1.92 REMARK 500 O HOH A 668 O HOH A 728 1.93 REMARK 500 O HOH A 650 O HOH A 674 1.93 REMARK 500 O HOH A 618 O HOH A 624 1.99 REMARK 500 O HOH B 471 O HOH B 671 2.00 REMARK 500 OE1 GLU A 213 O HOH A 525 2.00 REMARK 500 OD2 ASP B 51 O HOH B 666 2.01 REMARK 500 O HOH A 639 O HOH A 643 2.03 REMARK 500 OD2 ASP B 300 O HOH B 622 2.04 REMARK 500 NH2 ARG A 395 O HOH A 675 2.04 REMARK 500 O HOH A 604 O HOH A 679 2.05 REMARK 500 O HOH B 564 O HOH B 649 2.06 REMARK 500 O HOH B 635 O HOH B 682 2.06 REMARK 500 OH TYR B 25 OD2 ASP B 160 2.07 REMARK 500 O HOH B 512 O HOH B 668 2.07 REMARK 500 O HOH B 472 O HOH B 646 2.10 REMARK 500 O HOH A 620 O HOH A 750 2.11 REMARK 500 O HOH A 470 O HOH A 552 2.11 REMARK 500 O HOH B 678 O HOH B 707 2.12 REMARK 500 O HOH B 574 O HOH B 788 2.15 REMARK 500 O HOH B 513 O HOH B 542 2.16 REMARK 500 OE2 GLU B 347 O HOH B 544 2.17 REMARK 500 O HOH B 511 O HOH B 575 2.18 REMARK 500 O HOH B 717 O HOH B 746 2.18 REMARK 500 OG SER B 63 O HOH B 808 2.18 REMARK 500 O HOH A 621 O HOH A 631 2.19 REMARK 500 O HOH A 497 O HOH A 670 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 674 O HOH B 640 3644 1.98 REMARK 500 O HOH B 484 O HOH B 766 4555 1.99 REMARK 500 O HOH A 656 O HOH B 740 3644 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 64 60.97 64.94 REMARK 500 TRP A 65 -6.47 73.58 REMARK 500 MET A 87 107.19 -162.64 REMARK 500 VAL A 222 -46.01 71.61 REMARK 500 LYS A 283 -104.59 42.54 REMARK 500 ALA A 373 47.68 -85.93 REMARK 500 ARG A 403 -125.11 55.62 REMARK 500 TRP B 64 62.49 61.87 REMARK 500 TRP B 65 -9.15 77.64 REMARK 500 MET B 87 109.77 -162.53 REMARK 500 VAL B 222 -48.68 74.64 REMARK 500 LYS B 283 -99.87 49.22 REMARK 500 ALA B 373 45.26 -86.24 REMARK 500 ARG B 403 -123.96 42.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PL8 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PL8 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TFT RELATED DB: PDB DBREF 3TFU A 1 437 UNP P0A4X6 BIOA_MYCTU 1 437 DBREF 3TFU B 1 437 UNP P0A4X6 BIOA_MYCTU 1 437 SEQADV 3TFU MET A -19 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU GLY A -18 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER A -17 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER A -16 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A -15 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A -14 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A -13 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A -12 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A -11 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A -10 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER A -9 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER A -8 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU GLY A -7 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU LEU A -6 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU VAL A -5 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU PRO A -4 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU ARG A -3 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU GLY A -2 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER A -1 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS A 0 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU MET B -19 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU GLY B -18 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER B -17 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER B -16 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B -15 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B -14 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B -13 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B -12 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B -11 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B -10 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER B -9 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER B -8 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU GLY B -7 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU LEU B -6 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU VAL B -5 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU PRO B -4 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU ARG B -3 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU GLY B -2 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU SER B -1 UNP P0A4X6 EXPRESSION TAG SEQADV 3TFU HIS B 0 UNP P0A4X6 EXPRESSION TAG SEQRES 1 A 457 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 457 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA THR GLY SEQRES 3 A 457 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 4 A 457 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 5 A 457 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 6 A 457 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 7 A 457 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 8 A 457 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 9 A 457 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 10 A 457 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 11 A 457 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 12 A 457 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 13 A 457 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 14 A 457 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 15 A 457 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 16 A 457 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 17 A 457 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 18 A 457 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 19 A 457 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 20 A 457 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 21 A 457 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 22 A 457 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 23 A 457 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 24 A 457 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 25 A 457 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 26 A 457 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 27 A 457 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 28 A 457 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 29 A 457 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 30 A 457 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 31 A 457 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 32 A 457 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 33 A 457 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 34 A 457 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 35 A 457 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 36 A 457 LEU PRO SEQRES 1 B 457 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 457 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA THR GLY SEQRES 3 B 457 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 4 B 457 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 5 B 457 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 6 B 457 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 7 B 457 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 8 B 457 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 9 B 457 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 10 B 457 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 11 B 457 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 12 B 457 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 13 B 457 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 14 B 457 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 15 B 457 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 16 B 457 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 17 B 457 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 18 B 457 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 19 B 457 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 20 B 457 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 21 B 457 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 22 B 457 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 23 B 457 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 24 B 457 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 25 B 457 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 26 B 457 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 27 B 457 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 28 B 457 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 29 B 457 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 30 B 457 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 31 B 457 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 32 B 457 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 33 B 457 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 34 B 457 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 35 B 457 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 36 B 457 LEU PRO HET PL8 A 501 27 HET PL8 B 501 27 HET DMS B 502 4 HETNAM PL8 [5-HYDROXY-4-({[6-(3-HYDROXYPROPYL)-2-OXO-1,2- HETNAM 2 PL8 DIHYDROPYRIDIN-3-YL]AMINO}METHYL)-6-METHYLPYRIDIN-3- HETNAM 3 PL8 YL]METHYL DIHYDROGEN PHOSPHATE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 PL8 2(C16 H22 N3 O7 P) FORMUL 5 DMS C2 H6 O S FORMUL 6 HOH *701(H2 O) HELIX 1 1 THR A 9 LEU A 21 1 13 HELIX 2 2 MET A 61 THR A 66 1 6 HELIX 3 3 HIS A 73 MET A 87 1 15 HELIX 4 4 HIS A 97 THR A 111 1 15 HELIX 5 5 SER A 123 ARG A 142 1 20 HELIX 6 6 THR A 161 SER A 166 1 6 HELIX 7 7 ASP A 196 ALA A 211 1 16 HELIX 8 8 PRO A 234 GLU A 248 1 15 HELIX 9 9 ALA A 268 GLY A 273 1 6 HELIX 10 10 GLY A 282 GLY A 287 5 6 HELIX 11 11 ALA A 299 GLY A 308 1 10 HELIX 12 12 ASN A 322 GLY A 338 1 17 HELIX 13 13 ASP A 340 ASP A 357 1 18 HELIX 14 14 THR A 358 LEU A 362 5 5 HELIX 15 15 ASP A 384 ARG A 395 1 12 HELIX 16 16 THR A 415 VAL A 433 1 19 HELIX 17 17 THR B 9 LEU B 21 1 13 HELIX 18 18 MET B 61 THR B 66 1 6 HELIX 19 19 HIS B 73 MET B 87 1 15 HELIX 20 20 HIS B 97 THR B 111 1 15 HELIX 21 21 SER B 123 ARG B 142 1 20 HELIX 22 22 THR B 161 SER B 166 1 6 HELIX 23 23 ASP B 196 ALA B 211 1 16 HELIX 24 24 PRO B 234 GLU B 248 1 15 HELIX 25 25 PHE B 267 ALA B 272 5 6 HELIX 26 26 GLY B 282 GLY B 287 5 6 HELIX 27 27 ALA B 299 GLY B 308 1 10 HELIX 28 28 ASN B 322 GLY B 338 1 17 HELIX 29 29 ASP B 340 ASP B 357 1 18 HELIX 30 30 THR B 358 LEU B 362 5 5 HELIX 31 31 ASP B 384 ASP B 394 1 11 HELIX 32 32 THR B 415 VAL B 433 1 19 SHEET 1 A 5 VAL A 397 TRP A 398 0 SHEET 2 A 5 GLN A 53 ASP A 59 1 N LEU A 58 O TRP A 398 SHEET 3 A 5 TRP A 45 ARG A 50 -1 N LEU A 46 O VAL A 57 SHEET 4 A 5 VAL A 36 HIS A 42 -1 N ALA A 40 O THR A 47 SHEET 5 A 5 LEU B 95 THR B 96 1 O THR B 96 N ALA A 38 SHEET 1 B 5 LEU A 95 THR A 96 0 SHEET 2 B 5 VAL B 36 HIS B 42 1 O ALA B 38 N THR A 96 SHEET 3 B 5 TRP B 45 ARG B 50 -1 O THR B 47 N ALA B 40 SHEET 4 B 5 GLN B 53 ASP B 59 -1 O GLN B 53 N ARG B 50 SHEET 5 B 5 VAL B 397 TRP B 398 1 O TRP B 398 N LEU B 58 SHEET 1 C 7 LEU A 115 SER A 121 0 SHEET 2 C 7 ALA A 293 THR A 298 -1 O THR A 295 N PHE A 119 SHEET 3 C 7 ILE A 278 VAL A 281 -1 N MET A 279 O LEU A 296 SHEET 4 C 7 LEU A 250 ASP A 254 1 N PHE A 253 O CYS A 280 SHEET 5 C 7 LEU A 214 VAL A 219 1 N VAL A 217 O ILE A 252 SHEET 6 C 7 ARG A 149 TRP A 153 1 N ARG A 149 O ALA A 215 SHEET 7 C 7 VAL A 186 ALA A 188 1 O ALA A 188 N THR A 152 SHEET 1 D 2 VAL A 223 GLN A 224 0 SHEET 2 D 2 ARG A 230 PHE A 231 -1 O ARG A 230 N GLN A 224 SHEET 1 E 3 VAL A 365 VAL A 370 0 SHEET 2 E 3 GLY A 375 CYS A 379 -1 O GLU A 378 N ASP A 367 SHEET 3 E 3 LEU A 405 ALA A 408 -1 O VAL A 406 N ILE A 377 SHEET 1 F 7 LEU B 115 SER B 121 0 SHEET 2 F 7 ALA B 293 THR B 298 -1 O ALA B 293 N SER B 121 SHEET 3 F 7 ILE B 278 VAL B 281 -1 N MET B 279 O LEU B 296 SHEET 4 F 7 LEU B 250 ASP B 254 1 N PHE B 253 O ILE B 278 SHEET 5 F 7 LEU B 214 VAL B 219 1 N VAL B 217 O ILE B 252 SHEET 6 F 7 ARG B 149 TRP B 153 1 N ARG B 149 O ALA B 215 SHEET 7 F 7 VAL B 186 ALA B 188 1 O VAL B 186 N LEU B 150 SHEET 1 G 2 VAL B 223 GLN B 224 0 SHEET 2 G 2 ARG B 230 PHE B 231 -1 O ARG B 230 N GLN B 224 SHEET 1 H 3 VAL B 365 VAL B 370 0 SHEET 2 H 3 GLY B 375 CYS B 379 -1 O GLU B 378 N ASP B 367 SHEET 3 H 3 LEU B 405 ALA B 408 -1 O VAL B 406 N ILE B 377 SITE 1 AC1 20 TRP A 64 GLY A 124 SER A 125 TYR A 157 SITE 2 AC1 20 HIS A 158 GLY A 159 ASP A 254 ILE A 256 SITE 3 AC1 20 LYS A 283 HOH A 451 HOH A 490 HOH A 570 SITE 4 AC1 20 HOH A 630 HOH A 725 PHE B 92 GLY B 93 SITE 5 AC1 20 GLY B 316 PRO B 317 THR B 318 HOH B 462 SITE 1 AC2 18 PRO A 317 THR A 318 HOH A 541 TYR B 25 SITE 2 AC2 18 GLY B 124 SER B 125 TYR B 157 HIS B 158 SITE 3 AC2 18 ASP B 254 ILE B 256 ALA B 257 LYS B 283 SITE 4 AC2 18 PHE B 402 TYR B 407 HOH B 440 HOH B 514 SITE 5 AC2 18 HOH B 563 HOH B 631 SITE 1 AC3 10 GLY A 93 GLY A 94 HOH A 645 PRO B 24 SITE 2 AC3 10 TRP B 64 ARG B 400 HOH B 497 HOH B 631 SITE 3 AC3 10 HOH B 651 HOH B 729 CRYST1 62.616 66.312 201.279 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004968 0.00000