data_3TGC # _entry.id 3TGC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3TGC RCSB RCSB067447 WWPDB D_1000067447 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3TGB . unspecified PDB 3TGA . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3TGC _pdbx_database_status.recvd_initial_deposition_date 2011-08-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ogata, H.' 1 'He, C.' 2 'Knipp, M.' 3 # _citation.id primary _citation.title ;Insertion of an H-Bonding Residue into the Distal Pocket of the Ferriheme Protein Nitrophorin 4: Effect on Nitrite[BOND]Iron Coordination and Nitrite Disproportionation ; _citation.journal_abbrev Chem.Biodivers. _citation.journal_volume 9 _citation.page_first 1761 _citation.page_last 1775 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country CH _citation.journal_id_ISSN 1612-1872 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22976968 _citation.pdbx_database_id_DOI 10.1002/cbdv.201100401 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'He, C.' 1 primary 'Ogata, H.' 2 primary 'Knipp, M.' 3 # _cell.entry_id 3TGC _cell.length_a 69.762 _cell.length_b 43.105 _cell.length_c 52.428 _cell.angle_alpha 90.00 _cell.angle_beta 94.40 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TGC _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nitrophorin-4 20336.699 1 ? L130R ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'NITRITE ION' 46.005 1 ? ? ? ? 4 water nat water 18.015 158 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NP4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDRGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _entity_poly.pdbx_seq_one_letter_code_can ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDRGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 THR n 1 4 LYS n 1 5 ASN n 1 6 ALA n 1 7 ILE n 1 8 ALA n 1 9 GLN n 1 10 THR n 1 11 GLY n 1 12 PHE n 1 13 ASN n 1 14 LYS n 1 15 ASP n 1 16 LYS n 1 17 TYR n 1 18 PHE n 1 19 ASN n 1 20 GLY n 1 21 ASP n 1 22 VAL n 1 23 TRP n 1 24 TYR n 1 25 VAL n 1 26 THR n 1 27 ASP n 1 28 TYR n 1 29 LEU n 1 30 ASP n 1 31 LEU n 1 32 GLU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 VAL n 1 37 PRO n 1 38 LYS n 1 39 ARG n 1 40 TYR n 1 41 CYS n 1 42 ALA n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 ALA n 1 47 GLY n 1 48 THR n 1 49 ALA n 1 50 SER n 1 51 GLY n 1 52 LYS n 1 53 LEU n 1 54 LYS n 1 55 GLU n 1 56 ALA n 1 57 LEU n 1 58 TYR n 1 59 HIS n 1 60 TYR n 1 61 ASP n 1 62 PRO n 1 63 LYS n 1 64 THR n 1 65 GLN n 1 66 ASP n 1 67 THR n 1 68 PHE n 1 69 TYR n 1 70 ASP n 1 71 VAL n 1 72 SER n 1 73 GLU n 1 74 LEU n 1 75 GLN n 1 76 VAL n 1 77 GLU n 1 78 SER n 1 79 LEU n 1 80 GLY n 1 81 LYS n 1 82 TYR n 1 83 THR n 1 84 ALA n 1 85 ASN n 1 86 PHE n 1 87 LYS n 1 88 LYS n 1 89 VAL n 1 90 ASP n 1 91 LYS n 1 92 ASN n 1 93 GLY n 1 94 ASN n 1 95 VAL n 1 96 LYS n 1 97 VAL n 1 98 ALA n 1 99 VAL n 1 100 THR n 1 101 ALA n 1 102 GLY n 1 103 ASN n 1 104 TYR n 1 105 TYR n 1 106 THR n 1 107 PHE n 1 108 THR n 1 109 VAL n 1 110 MET n 1 111 TYR n 1 112 ALA n 1 113 ASP n 1 114 ASP n 1 115 SER n 1 116 SER n 1 117 ALA n 1 118 LEU n 1 119 ILE n 1 120 HIS n 1 121 THR n 1 122 CYS n 1 123 LEU n 1 124 HIS n 1 125 LYS n 1 126 GLY n 1 127 ASN n 1 128 LYS n 1 129 ASP n 1 130 ARG n 1 131 GLY n 1 132 ASP n 1 133 LEU n 1 134 TYR n 1 135 ALA n 1 136 VAL n 1 137 LEU n 1 138 ASN n 1 139 ARG n 1 140 ASN n 1 141 LYS n 1 142 ASP n 1 143 ALA n 1 144 ALA n 1 145 ALA n 1 146 GLY n 1 147 ASP n 1 148 LYS n 1 149 VAL n 1 150 LYS n 1 151 SER n 1 152 ALA n 1 153 VAL n 1 154 SER n 1 155 ALA n 1 156 ALA n 1 157 THR n 1 158 LEU n 1 159 GLU n 1 160 PHE n 1 161 SER n 1 162 LYS n 1 163 PHE n 1 164 ILE n 1 165 SER n 1 166 THR n 1 167 LYS n 1 168 GLU n 1 169 ASN n 1 170 ASN n 1 171 CYS n 1 172 ALA n 1 173 TYR n 1 174 ASP n 1 175 ASN n 1 176 ASP n 1 177 SER n 1 178 LEU n 1 179 LYS n 1 180 SER n 1 181 LEU n 1 182 LEU n 1 183 THR n 1 184 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Triatomid bug' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodnius prolixus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 13249 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NP4_RHOPR _struct_ref.pdbx_db_accession Q94734 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TGC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q94734 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 184 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3TGC _struct_ref_seq_dif.mon_id ARG _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 130 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q94734 _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 151 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 130 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO2 non-polymer . 'NITRITE ION' ? 'N O2 -1' 46.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3TGC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_percent_sol 36.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details 'Ammonium phosphate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2010-12-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91841 # _reflns.entry_id 3TGC _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.59 _reflns.d_resolution_high 1.40 _reflns.number_obs 30602 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.44 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.285 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3TGC _refine.ls_number_reflns_obs 29064 _refine.ls_number_reflns_all 30594 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.590 _refine.ls_d_res_high 1.400 _refine.ls_percent_reflns_obs 99.55 _refine.ls_R_factor_obs 0.1513 _refine.ls_R_factor_R_work 0.1495 _refine.ls_R_factor_R_free 0.1870 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1530 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.5133 _refine.aniso_B[2][2] 1.7190 _refine.aniso_B[3][3] -4.2323 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -2.9378 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.455 _refine.solvent_model_param_bsol 48.226 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.17 _refine.pdbx_overall_phase_error 16.24 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1431 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1635 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 30.590 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1571 ? 'X-RAY DIFFRACTION' f_angle_d 1.048 ? ? 2145 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 11.853 ? ? 556 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.071 ? ? 228 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 275 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4000 1.4452 2609 0.1886 100.00 0.2393 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.4452 1.4969 2636 0.1642 99.00 0.2410 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.4969 1.5568 2626 0.1372 100.00 0.1624 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.5568 1.6276 2626 0.1369 100.00 0.2228 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.6276 1.7134 2639 0.1276 100.00 0.1927 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.7134 1.8208 2616 0.1156 100.00 0.1819 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.8208 1.9613 2655 0.1240 100.00 0.1714 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.9613 2.1587 2644 0.1319 100.00 0.1712 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.1587 2.4709 2632 0.1415 100.00 0.1711 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.4709 3.1126 2670 0.1656 99.00 0.2159 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.1126 30.5977 2711 0.1679 99.00 0.1719 . . 143 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3TGC _struct.title 'Crystal structure of L130R mutant of Nitrophorin 4 from Rhodnius prolixus complexed with nitrite at pH 7.4' _struct.pdbx_descriptor Nitrophorin-4 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TGC _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'heme, lipocalin, nitrophorin, metal binding protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? PHE A 18 ? ASN A 13 PHE A 18 1 ? 6 HELX_P HELX_P2 2 GLY A 146 ? ALA A 156 ? GLY A 146 ALA A 156 1 ? 11 HELX_P HELX_P3 3 GLU A 159 ? PHE A 163 ? GLU A 159 PHE A 163 5 ? 5 HELX_P HELX_P4 4 ASP A 174 ? LEU A 182 ? ASP A 174 LEU A 182 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 2 A CYS 122 1_555 ? ? ? ? ? ? ? 2.029 ? disulf2 disulf ? ? A CYS 41 SG B ? ? 1_555 A CYS 171 SG B ? A CYS 41 A CYS 171 1_555 ? ? ? ? ? ? ? 2.013 ? disulf3 disulf ? ? A CYS 41 SG A ? ? 1_555 A CYS 171 SG A ? A CYS 41 A CYS 171 1_555 ? ? ? ? ? ? ? 2.027 ? metalc1 metalc ? ? B HEM . FE ? ? ? 1_555 C NO2 . N ? ? A HEM 185 A NO2 186 1_555 ? ? ? ? ? ? ? 2.062 ? metalc2 metalc ? ? A HIS 59 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 59 A HEM 185 1_555 ? ? ? ? ? ? ? 2.074 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 95 ? VAL A 97 ? VAL A 95 VAL A 97 A 2 LYS A 81 ? VAL A 89 ? LYS A 81 VAL A 89 A 3 THR A 67 ? SER A 78 ? THR A 67 SER A 78 A 4 LYS A 52 ? TYR A 60 ? LYS A 52 TYR A 60 A 5 CYS A 41 ? ALA A 49 ? CYS A 41 ALA A 49 A 6 VAL A 22 ? ASP A 30 ? VAL A 22 ASP A 30 A 7 ILE A 164 ? SER A 165 ? ILE A 164 SER A 165 B 1 VAL A 95 ? VAL A 97 ? VAL A 95 VAL A 97 B 2 LYS A 81 ? VAL A 89 ? LYS A 81 VAL A 89 B 3 ASN A 103 ? ALA A 112 ? ASN A 103 ALA A 112 B 4 SER A 116 ? LYS A 125 ? SER A 116 LYS A 125 B 5 LEU A 133 ? ASN A 138 ? LEU A 133 ASN A 138 B 6 VAL A 22 ? ASP A 30 ? VAL A 22 ASP A 30 B 7 ILE A 164 ? SER A 165 ? ILE A 164 SER A 165 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 96 ? O LYS A 96 N LYS A 88 ? N LYS A 88 A 2 3 O LYS A 81 ? O LYS A 81 N GLU A 77 ? N GLU A 77 A 3 4 O LEU A 74 ? O LEU A 74 N LEU A 53 ? N LEU A 53 A 4 5 O LYS A 54 ? O LYS A 54 N GLY A 47 ? N GLY A 47 A 5 6 O LEU A 44 ? O LEU A 44 N TRP A 23 ? N TRP A 23 A 6 7 N TYR A 28 ? N TYR A 28 O ILE A 164 ? O ILE A 164 B 1 2 O LYS A 96 ? O LYS A 96 N LYS A 88 ? N LYS A 88 B 2 3 N ALA A 84 ? N ALA A 84 O TYR A 105 ? O TYR A 105 B 3 4 N TYR A 104 ? N TYR A 104 O HIS A 124 ? O HIS A 124 B 4 5 N ALA A 117 ? N ALA A 117 O LEU A 137 ? O LEU A 137 B 5 6 O ASN A 138 ? O ASN A 138 N TYR A 24 ? N TYR A 24 B 6 7 N TYR A 28 ? N TYR A 28 O ILE A 164 ? O ILE A 164 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE HEM A 185' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NO2 A 186' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 TYR A 28 ? TYR A 28 . ? 1_555 ? 2 AC1 19 VAL A 36 ? VAL A 36 . ? 1_555 ? 3 AC1 19 PRO A 37 ? PRO A 37 . ? 1_555 ? 4 AC1 19 TYR A 40 ? TYR A 40 . ? 1_555 ? 5 AC1 19 LEU A 57 ? LEU A 57 . ? 1_555 ? 6 AC1 19 HIS A 59 ? HIS A 59 . ? 1_555 ? 7 AC1 19 PHE A 68 ? PHE A 68 . ? 1_555 ? 8 AC1 19 ASP A 70 ? ASP A 70 . ? 1_555 ? 9 AC1 19 PHE A 86 ? PHE A 86 . ? 1_555 ? 10 AC1 19 LYS A 88 ? LYS A 88 . ? 1_555 ? 11 AC1 19 TYR A 105 ? TYR A 105 . ? 1_555 ? 12 AC1 19 PHE A 107 ? PHE A 107 . ? 1_555 ? 13 AC1 19 LEU A 123 ? LEU A 123 . ? 1_555 ? 14 AC1 19 LYS A 125 ? LYS A 125 . ? 1_555 ? 15 AC1 19 LYS A 128 ? LYS A 128 . ? 1_555 ? 16 AC1 19 ARG A 130 ? ARG A 130 . ? 1_555 ? 17 AC1 19 LEU A 133 ? LEU A 133 . ? 1_555 ? 18 AC1 19 NO2 C . ? NO2 A 186 . ? 1_555 ? 19 AC1 19 HOH D . ? HOH A 263 . ? 1_555 ? 20 AC2 3 LEU A 133 ? LEU A 133 . ? 1_555 ? 21 AC2 3 HEM B . ? HEM A 185 . ? 1_555 ? 22 AC2 3 HOH D . ? HOH A 357 . ? 1_555 ? # _database_PDB_matrix.entry_id 3TGC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3TGC _atom_sites.fract_transf_matrix[1][1] 0.014334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001104 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023199 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019130 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 CYS 122 122 122 CYS CYS A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 LYS 184 184 184 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 204 ? D HOH . 2 1 A HOH 329 ? D HOH . 3 1 A HOH 351 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? C NO2 . ? A NO2 186 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NA ? B HEM . ? A HEM 185 ? 1_555 86.8 ? 2 N ? C NO2 . ? A NO2 186 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NB ? B HEM . ? A HEM 185 ? 1_555 90.8 ? 3 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NB ? B HEM . ? A HEM 185 ? 1_555 90.3 ? 4 N ? C NO2 . ? A NO2 186 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NC ? B HEM . ? A HEM 185 ? 1_555 95.4 ? 5 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NC ? B HEM . ? A HEM 185 ? 1_555 177.6 ? 6 NB ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NC ? B HEM . ? A HEM 185 ? 1_555 88.6 ? 7 N ? C NO2 . ? A NO2 186 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 90.3 ? 8 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 88.3 ? 9 NB ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 178.2 ? 10 NC ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 92.8 ? 11 N ? C NO2 . ? A NO2 186 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 175.8 ? 12 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 89.0 ? 13 NB ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 89.7 ? 14 NC ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 88.8 ? 15 ND ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 89.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-22 2 'Structure model' 1 1 2012-09-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 MOLREP phasing . ? 2 PHENIX refinement . ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 65 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 80.65 _pdbx_validate_torsion.psi -1.35 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'NITRITE ION' NO2 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 185 185 HEM HEM A . C 3 NO2 1 186 186 NO2 NO2 A . D 4 HOH 1 201 201 HOH HOH A . D 4 HOH 2 202 202 HOH HOH A . D 4 HOH 3 203 203 HOH HOH A . D 4 HOH 4 204 204 HOH HOH A . D 4 HOH 5 205 205 HOH HOH A . D 4 HOH 6 206 206 HOH HOH A . D 4 HOH 7 207 207 HOH HOH A . D 4 HOH 8 208 208 HOH HOH A . D 4 HOH 9 209 209 HOH HOH A . D 4 HOH 10 210 210 HOH HOH A . D 4 HOH 11 211 211 HOH HOH A . D 4 HOH 12 212 212 HOH HOH A . D 4 HOH 13 213 213 HOH HOH A . D 4 HOH 14 214 214 HOH HOH A . D 4 HOH 15 215 215 HOH HOH A . D 4 HOH 16 216 216 HOH HOH A . D 4 HOH 17 217 217 HOH HOH A . D 4 HOH 18 218 218 HOH HOH A . D 4 HOH 19 219 219 HOH HOH A . D 4 HOH 20 220 220 HOH HOH A . D 4 HOH 21 221 221 HOH HOH A . D 4 HOH 22 222 222 HOH HOH A . D 4 HOH 23 223 223 HOH HOH A . D 4 HOH 24 224 224 HOH HOH A . D 4 HOH 25 225 225 HOH HOH A . D 4 HOH 26 226 226 HOH HOH A . D 4 HOH 27 227 227 HOH HOH A . D 4 HOH 28 228 228 HOH HOH A . D 4 HOH 29 229 229 HOH HOH A . D 4 HOH 30 230 230 HOH HOH A . D 4 HOH 31 231 231 HOH HOH A . D 4 HOH 32 232 232 HOH HOH A . D 4 HOH 33 233 233 HOH HOH A . D 4 HOH 34 234 234 HOH HOH A . D 4 HOH 35 235 235 HOH HOH A . D 4 HOH 36 236 236 HOH HOH A . D 4 HOH 37 237 237 HOH HOH A . D 4 HOH 38 238 238 HOH HOH A . D 4 HOH 39 239 239 HOH HOH A . D 4 HOH 40 240 240 HOH HOH A . D 4 HOH 41 241 241 HOH HOH A . D 4 HOH 42 242 242 HOH HOH A . D 4 HOH 43 243 243 HOH HOH A . D 4 HOH 44 244 244 HOH HOH A . D 4 HOH 45 245 245 HOH HOH A . D 4 HOH 46 246 246 HOH HOH A . D 4 HOH 47 247 247 HOH HOH A . D 4 HOH 48 248 248 HOH HOH A . D 4 HOH 49 249 249 HOH HOH A . D 4 HOH 50 250 250 HOH HOH A . D 4 HOH 51 251 251 HOH HOH A . D 4 HOH 52 252 252 HOH HOH A . D 4 HOH 53 253 253 HOH HOH A . D 4 HOH 54 254 254 HOH HOH A . D 4 HOH 55 255 255 HOH HOH A . D 4 HOH 56 256 256 HOH HOH A . D 4 HOH 57 257 257 HOH HOH A . D 4 HOH 58 258 258 HOH HOH A . D 4 HOH 59 259 259 HOH HOH A . D 4 HOH 60 260 260 HOH HOH A . D 4 HOH 61 261 261 HOH HOH A . D 4 HOH 62 262 262 HOH HOH A . D 4 HOH 63 263 263 HOH HOH A . D 4 HOH 64 264 264 HOH HOH A . D 4 HOH 65 265 265 HOH HOH A . D 4 HOH 66 266 266 HOH HOH A . D 4 HOH 67 267 267 HOH HOH A . D 4 HOH 68 268 268 HOH HOH A . D 4 HOH 69 269 269 HOH HOH A . D 4 HOH 70 270 270 HOH HOH A . D 4 HOH 71 271 271 HOH HOH A . D 4 HOH 72 272 272 HOH HOH A . D 4 HOH 73 273 273 HOH HOH A . D 4 HOH 74 274 274 HOH HOH A . D 4 HOH 75 275 275 HOH HOH A . D 4 HOH 76 276 276 HOH HOH A . D 4 HOH 77 277 277 HOH HOH A . D 4 HOH 78 278 278 HOH HOH A . D 4 HOH 79 279 279 HOH HOH A . D 4 HOH 80 280 280 HOH HOH A . D 4 HOH 81 281 281 HOH HOH A . D 4 HOH 82 282 282 HOH HOH A . D 4 HOH 83 283 283 HOH HOH A . D 4 HOH 84 284 284 HOH HOH A . D 4 HOH 85 285 285 HOH HOH A . D 4 HOH 86 286 286 HOH HOH A . D 4 HOH 87 287 287 HOH HOH A . D 4 HOH 88 288 288 HOH HOH A . D 4 HOH 89 289 289 HOH HOH A . D 4 HOH 90 290 290 HOH HOH A . D 4 HOH 91 291 291 HOH HOH A . D 4 HOH 92 292 292 HOH HOH A . D 4 HOH 93 293 293 HOH HOH A . D 4 HOH 94 294 294 HOH HOH A . D 4 HOH 95 295 295 HOH HOH A . D 4 HOH 96 296 296 HOH HOH A . D 4 HOH 97 297 297 HOH HOH A . D 4 HOH 98 298 298 HOH HOH A . D 4 HOH 99 299 299 HOH HOH A . D 4 HOH 100 300 300 HOH HOH A . D 4 HOH 101 301 301 HOH HOH A . D 4 HOH 102 302 302 HOH HOH A . D 4 HOH 103 303 303 HOH HOH A . D 4 HOH 104 304 304 HOH HOH A . D 4 HOH 105 305 305 HOH HOH A . D 4 HOH 106 306 306 HOH HOH A . D 4 HOH 107 307 307 HOH HOH A . D 4 HOH 108 308 308 HOH HOH A . D 4 HOH 109 309 309 HOH HOH A . D 4 HOH 110 310 310 HOH HOH A . D 4 HOH 111 311 311 HOH HOH A . D 4 HOH 112 312 312 HOH HOH A . D 4 HOH 113 313 313 HOH HOH A . D 4 HOH 114 314 314 HOH HOH A . D 4 HOH 115 315 315 HOH HOH A . D 4 HOH 116 316 316 HOH HOH A . D 4 HOH 117 317 317 HOH HOH A . D 4 HOH 118 318 318 HOH HOH A . D 4 HOH 119 319 319 HOH HOH A . D 4 HOH 120 320 320 HOH HOH A . D 4 HOH 121 321 321 HOH HOH A . D 4 HOH 122 322 322 HOH HOH A . D 4 HOH 123 323 323 HOH HOH A . D 4 HOH 124 324 324 HOH HOH A . D 4 HOH 125 325 325 HOH HOH A . D 4 HOH 126 326 326 HOH HOH A . D 4 HOH 127 327 327 HOH HOH A . D 4 HOH 128 328 328 HOH HOH A . D 4 HOH 129 329 329 HOH HOH A . D 4 HOH 130 330 330 HOH HOH A . D 4 HOH 131 331 331 HOH HOH A . D 4 HOH 132 332 332 HOH HOH A . D 4 HOH 133 333 333 HOH HOH A . D 4 HOH 134 334 334 HOH HOH A . D 4 HOH 135 335 335 HOH HOH A . D 4 HOH 136 336 336 HOH HOH A . D 4 HOH 137 337 337 HOH HOH A . D 4 HOH 138 338 338 HOH HOH A . D 4 HOH 139 339 339 HOH HOH A . D 4 HOH 140 340 340 HOH HOH A . D 4 HOH 141 341 341 HOH HOH A . D 4 HOH 142 342 342 HOH HOH A . D 4 HOH 143 343 343 HOH HOH A . D 4 HOH 144 344 344 HOH HOH A . D 4 HOH 145 345 345 HOH HOH A . D 4 HOH 146 346 346 HOH HOH A . D 4 HOH 147 347 347 HOH HOH A . D 4 HOH 148 348 348 HOH HOH A . D 4 HOH 149 349 349 HOH HOH A . D 4 HOH 150 350 350 HOH HOH A . D 4 HOH 151 351 351 HOH HOH A . D 4 HOH 152 352 352 HOH HOH A . D 4 HOH 153 353 353 HOH HOH A . D 4 HOH 154 354 354 HOH HOH A . D 4 HOH 155 355 355 HOH HOH A . D 4 HOH 156 356 356 HOH HOH A . D 4 HOH 157 357 357 HOH HOH A . D 4 HOH 158 358 358 HOH HOH A . #