HEADER VIRAL PROTEIN 17-AUG-11 3TGR TITLE CRYSTAL STRUCTURE OF UNLIGANDED HIV-1 CLADE C STRAIN C1086 GP120 CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CLADE C1086 GP120; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: HIV-1 ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV-1 GP120, UNLIGANDED, CLADE C1086, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,P.D.KWONG REVDAT 5 29-JUL-20 3TGR 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 08-NOV-17 3TGR 1 REMARK REVDAT 3 23-MAY-12 3TGR 1 JRNL REVDAT 2 09-MAY-12 3TGR 1 REMARK REVDAT 1 04-APR-12 3TGR 0 JRNL AUTH Y.D.KWON,A.FINZI,X.WU,C.DOGO-ISONAGIE,L.K.LEE,L.R.MOORE, JRNL AUTH 2 S.D.SCHMIDT,J.STUCKEY,Y.YANG,T.ZHOU,J.ZHU,D.A.VICIC, JRNL AUTH 3 A.K.DEBNATH,L.SHAPIRO,C.A.BEWLEY,J.R.MASCOLA,J.G.SODROSKI, JRNL AUTH 4 P.D.KWONG JRNL TITL UNLIGANDED HIV-1 GP120 CORE STRUCTURES ASSUME THE CD4-BOUND JRNL TITL 2 CONFORMATION WITH REGULATION BY QUATERNARY INTERACTIONS AND JRNL TITL 3 VARIABLE LOOPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 5663 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22451932 JRNL DOI 10.1073/PNAS.1112391109 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 19639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2952 - 5.3537 0.93 2799 146 0.2318 0.2997 REMARK 3 2 5.3537 - 4.2504 0.98 2786 149 0.1783 0.2217 REMARK 3 3 4.2504 - 3.7134 0.98 2835 136 0.1954 0.2478 REMARK 3 4 3.7134 - 3.3740 0.98 2802 128 0.2154 0.2898 REMARK 3 5 3.3740 - 3.1323 0.96 2705 136 0.2428 0.3167 REMARK 3 6 3.1323 - 2.9476 0.92 2580 131 0.2757 0.3346 REMARK 3 7 2.9476 - 2.8000 0.78 2196 110 0.3266 0.4035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.27 REMARK 3 B_SOL : 31.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.86460 REMARK 3 B22 (A**2) : -3.74170 REMARK 3 B33 (A**2) : -10.60740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5916 REMARK 3 ANGLE : 0.607 8026 REMARK 3 CHIRALITY : 0.040 932 REMARK 3 PLANARITY : 0.002 1010 REMARK 3 DIHEDRAL : 11.020 2200 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 90:255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4157 -12.4848 19.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.2566 REMARK 3 T33: 0.3366 T12: -0.0606 REMARK 3 T13: 0.1537 T23: 0.0767 REMARK 3 L TENSOR REMARK 3 L11: 1.6379 L22: 3.3291 REMARK 3 L33: 4.3197 L12: 0.1505 REMARK 3 L13: 0.6982 L23: -0.6007 REMARK 3 S TENSOR REMARK 3 S11: 0.2525 S12: 0.3451 S13: -0.2788 REMARK 3 S21: -0.3866 S22: -0.2602 S23: -0.8755 REMARK 3 S31: -0.1846 S32: 1.0793 S33: 0.2337 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 256:474 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4360 -9.5354 33.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.3041 T22: 0.1039 REMARK 3 T33: 0.0087 T12: -0.0174 REMARK 3 T13: 0.0347 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.7625 L22: 2.7849 REMARK 3 L33: 2.8897 L12: -0.1891 REMARK 3 L13: 0.5292 L23: -0.6046 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.1545 S13: 0.1036 REMARK 3 S21: 0.3648 S22: -0.0461 S23: -0.1038 REMARK 3 S31: -0.3483 S32: -0.0929 S33: 0.0705 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 475:492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6160 -11.1665 23.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.6582 REMARK 3 T33: 0.5094 T12: -0.1112 REMARK 3 T13: 0.0155 T23: -0.1269 REMARK 3 L TENSOR REMARK 3 L11: 6.4838 L22: 5.8978 REMARK 3 L33: 7.5003 L12: 6.1015 REMARK 3 L13: -4.4544 L23: -4.6340 REMARK 3 S TENSOR REMARK 3 S11: -0.2739 S12: 0.0251 S13: -2.0645 REMARK 3 S21: 0.2609 S22: -0.4633 S23: -1.5441 REMARK 3 S31: -0.4795 S32: 1.8424 S33: 0.7010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 44:89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8357 -21.2341 15.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.3567 REMARK 3 T33: 0.4757 T12: -0.0024 REMARK 3 T13: 0.1996 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4965 L22: 1.1631 REMARK 3 L33: 3.7163 L12: -0.3466 REMARK 3 L13: 0.4339 L23: -0.4634 REMARK 3 S TENSOR REMARK 3 S11: 0.1866 S12: 0.6286 S13: -0.1692 REMARK 3 S21: -0.2888 S22: -0.2606 S23: -0.6500 REMARK 3 S31: 0.4693 S32: 1.0326 S33: 0.2247 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 762:948 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7368 -12.6779 37.5814 REMARK 3 T TENSOR REMARK 3 T11: 0.6327 T22: 0.3158 REMARK 3 T33: 0.2143 T12: -0.0824 REMARK 3 T13: 0.0117 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 2.2124 L22: 2.2615 REMARK 3 L33: 1.4032 L12: -0.0822 REMARK 3 L13: 1.8086 L23: -0.5716 REMARK 3 S TENSOR REMARK 3 S11: 0.1505 S12: -0.6382 S13: -0.2809 REMARK 3 S21: 1.0100 S22: 0.0883 S23: -0.1986 REMARK 3 S31: 0.1175 S32: -0.1595 S33: -0.1994 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 90:255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0528 -47.6603 10.0031 REMARK 3 T TENSOR REMARK 3 T11: 0.4541 T22: 0.1039 REMARK 3 T33: 0.6371 T12: 0.0099 REMARK 3 T13: -0.5118 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 1.9772 L22: 1.7798 REMARK 3 L33: 1.4707 L12: 0.8437 REMARK 3 L13: -0.3675 L23: 0.0601 REMARK 3 S TENSOR REMARK 3 S11: -0.5047 S12: 0.1594 S13: 0.7920 REMARK 3 S21: -0.9125 S22: 0.3475 S23: 0.7996 REMARK 3 S31: 0.2109 S32: -0.2492 S33: 0.0490 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 256:474 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1367 -46.9023 28.2165 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.4194 REMARK 3 T33: 0.3881 T12: 0.0711 REMARK 3 T13: -0.1693 T23: -0.2152 REMARK 3 L TENSOR REMARK 3 L11: 3.1510 L22: 2.3125 REMARK 3 L33: 1.7688 L12: 0.2897 REMARK 3 L13: -2.4198 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: -0.8433 S13: 0.7133 REMARK 3 S21: -0.0144 S22: 0.2400 S23: 0.2802 REMARK 3 S31: 0.1340 S32: 0.3995 S33: -0.1271 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 475:492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9945 -47.0657 12.7253 REMARK 3 T TENSOR REMARK 3 T11: 0.3866 T22: 0.4048 REMARK 3 T33: 0.8793 T12: -0.0485 REMARK 3 T13: -0.3877 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 5.6789 L22: 0.7733 REMARK 3 L33: 2.3454 L12: -0.6421 REMARK 3 L13: 3.2981 L23: -0.5551 REMARK 3 S TENSOR REMARK 3 S11: -0.2102 S12: 0.0338 S13: 0.9727 REMARK 3 S21: -0.1296 S22: -0.0290 S23: 1.0726 REMARK 3 S31: 0.6549 S32: -0.2599 S33: 0.3671 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 44:89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9592 -40.2586 2.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.5812 T22: 0.3913 REMARK 3 T33: 0.5242 T12: 0.0532 REMARK 3 T13: -0.4474 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.4242 L22: 1.0877 REMARK 3 L33: 0.9031 L12: -0.6241 REMARK 3 L13: 0.1559 L23: -0.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.3746 S12: -0.0917 S13: -0.2198 REMARK 3 S21: -0.6470 S22: -0.0113 S23: 0.3370 REMARK 3 S31: -0.1724 S32: -0.3888 S33: 0.2624 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 734:892 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2232 -42.0447 28.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.6452 T22: 0.2653 REMARK 3 T33: 0.3308 T12: -0.1213 REMARK 3 T13: -0.0073 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 3.8015 L22: 0.4014 REMARK 3 L33: 1.9951 L12: 1.4092 REMARK 3 L13: 0.2633 L23: 0.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.4886 S12: 0.3221 S13: 0.3864 REMARK 3 S21: 0.6242 S22: 0.2536 S23: -0.3612 REMARK 3 S31: -0.1060 S32: -0.0494 S33: -0.6633 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20001 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 % PEG 1500, 0.1M CACL2, 0.1M REMARK 280 IMIDAZOLE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH REMARK 280 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.52000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.52000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.52000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.75500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.52000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.75500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 42 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 317 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 SER A 460A REMARK 465 ASN A 460B REMARK 465 GLU A 460C REMARK 465 THR A 460D REMARK 465 ASN B 317 REMARK 465 GLY B 318 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 GLY B 323 REMARK 465 GLY B 324 REMARK 465 SER B 460A REMARK 465 ASN B 460B REMARK 465 GLU B 460C REMARK 465 THR B 460D REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH B 497 2.02 REMARK 500 ND2 ASN A 276 O5 NAG A 776 2.10 REMARK 500 O HOH A 28 O HOH A 500 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 46 -155.58 -162.27 REMARK 500 ASP A 57 31.52 -93.99 REMARK 500 SER A 115 -72.12 -83.89 REMARK 500 ASP A 211 100.83 -169.87 REMARK 500 PRO A 212 154.62 -46.24 REMARK 500 GLN A 258 -47.09 69.77 REMARK 500 GLU A 268 -92.81 -117.19 REMARK 500 ASN A 276 111.24 -160.09 REMARK 500 PRO A 354 62.35 -61.37 REMARK 500 SER A 356 47.53 31.40 REMARK 500 ASN A 397 34.89 72.68 REMARK 500 ILE A 491 1.46 -69.73 REMARK 500 LYS B 46 -146.74 -159.49 REMARK 500 SER B 115 -80.71 -66.65 REMARK 500 PRO B 212 160.10 -49.18 REMARK 500 PRO B 220 176.73 -57.51 REMARK 500 LYS B 231 24.97 -72.31 REMARK 500 THR B 232 -9.23 -142.66 REMARK 500 GLN B 258 -58.26 67.70 REMARK 500 GLU B 268 -98.00 -115.52 REMARK 500 ASN B 276 103.33 -177.21 REMARK 500 SER B 356 93.45 -161.60 REMARK 500 ASP B 474 99.97 -69.71 REMARK 500 LYS B 487 116.73 -164.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TGQ RELATED DB: PDB REMARK 900 RELATED ID: 3TGS RELATED DB: PDB REMARK 900 RELATED ID: 3TGT RELATED DB: PDB REMARK 900 RELATED ID: 3TIH RELATED DB: PDB DBREF 3TGR A 44 492 PDB 3TGR 3TGR 44 492 DBREF 3TGR B 44 492 PDB 3TGR 3TGR 44 492 SEQRES 1 A 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 A 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 A 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 A 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 A 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 A 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 A 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 A 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 A 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 A 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 A 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 A 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 A 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 A 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 A 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 A 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 A 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 A 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 A 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 A 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 A 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 A 358 TYR LYS VAL VAL GLU ILE LYS SEQRES 1 B 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 B 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 B 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 B 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 B 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 B 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 B 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 B 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 B 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 B 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 B 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 B 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 B 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 B 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 B 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 B 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 B 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 B 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 B 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 B 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 B 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 B 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 B 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 B 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 B 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 B 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 B 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 B 358 TYR LYS VAL VAL GLU ILE LYS MODRES 3TGR ASN A 234 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 339 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 386 ASN GLYCOSYLATION SITE MODRES 3TGR ASN B 392 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 392 ASN GLYCOSYLATION SITE MODRES 3TGR ASN B 386 ASN GLYCOSYLATION SITE MODRES 3TGR ASN B 289 ASN GLYCOSYLATION SITE MODRES 3TGR ASN B 262 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 448 ASN GLYCOSYLATION SITE MODRES 3TGR ASN B 234 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 262 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 289 ASN GLYCOSYLATION SITE MODRES 3TGR ASN A 276 ASN GLYCOSYLATION SITE MODRES 3TGR ASN B 276 ASN GLYCOSYLATION SITE HET NAG A 734 14 HET NAG A 762 14 HET NAG A 776 14 HET NAG A 789 14 HET NAG A 839 14 HET NAG A 886 14 HET NAG A 892 14 HET NAG A 948 14 HET NAG B 734 14 HET NAG B 762 14 HET NAG B 776 14 HET NAG B 789 14 HET NAG B 886 14 HET NAG B 892 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 NAG 14(C8 H15 N O6) FORMUL 17 HOH *89(H2 O) HELIX 1 1 GLU A 64 CYS A 74 1 11 HELIX 2 2 ASN A 98 LEU A 116 1 19 HELIX 3 3 GLU A 335 LYS A 351 1 17 HELIX 4 4 ASP A 368 THR A 373 1 6 HELIX 5 5 ARG A 476 TYR A 484 1 9 HELIX 6 6 GLU B 64 CYS B 74 1 11 HELIX 7 7 ASN B 98 SER B 115 1 18 HELIX 8 8 GLU B 335 PHE B 353 1 19 HELIX 9 9 ASP B 368 THR B 373 1 6 HELIX 10 10 ARG B 476 TYR B 484 1 9 SHEET 1 A 3 VAL A 75 PRO A 76 0 SHEET 2 A 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 A 3 HIS A 216 CYS A 218 -1 O CYS A 218 N PHE A 53 SHEET 1 B 2 GLU A 91 ASN A 94 0 SHEET 2 B 2 THR A 236 CYS A 239 -1 O CYS A 239 N GLU A 91 SHEET 1 C 4 SER A 199 THR A 202 0 SHEET 2 C 4 VAL A 120 THR A 123 -1 N THR A 123 O SER A 199 SHEET 3 C 4 ARG A 432 ILE A 434 -1 O ILE A 434 N VAL A 120 SHEET 4 C 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 D 3 THR A 244 VAL A 245 0 SHEET 2 D 3 PHE A 223 LYS A 227 -1 N ILE A 225 O VAL A 245 SHEET 3 D 3 TYR A 486 GLU A 490 -1 O LYS A 487 N LEU A 226 SHEET 1 E 7 LEU A 259 LEU A 261 0 SHEET 2 E 7 ILE A 443 ARG A 456 -1 O GLY A 451 N LEU A 260 SHEET 3 E 7 ILE A 284 ARG A 298 -1 N VAL A 292 O ILE A 449 SHEET 4 E 7 GLN A 328 ASN A 334 -1 O HIS A 330 N THR A 297 SHEET 5 E 7 THR A 413 LYS A 421 -1 O CYS A 418 N ALA A 329 SHEET 6 E 7 GLU A 381 CYS A 385 -1 N TYR A 384 O LYS A 419 SHEET 7 E 7 HIS A 374 CYS A 378 -1 N CYS A 378 O GLU A 381 SHEET 1 F 7 ILE A 271 ARG A 273 0 SHEET 2 F 7 ILE A 284 ARG A 298 -1 O ILE A 285 N ARG A 273 SHEET 3 F 7 ILE A 443 ARG A 456 -1 O ILE A 449 N VAL A 292 SHEET 4 F 7 THR A 465 PRO A 470 -1 O ARG A 469 N LEU A 455 SHEET 5 F 7 THR A 358 PHE A 361 1 N THR A 358 O GLU A 466 SHEET 6 F 7 GLY A 393 THR A 394 -1 O GLY A 393 N PHE A 361 SHEET 7 F 7 ASN A 404 HIS A 405 -1 O ASN A 404 N THR A 394 SHEET 1 G 3 VAL B 75 PRO B 76 0 SHEET 2 G 3 PHE B 53 SER B 56 1 N CYS B 54 O VAL B 75 SHEET 3 G 3 HIS B 216 CYS B 218 -1 O CYS B 218 N PHE B 53 SHEET 1 H 2 GLU B 91 ASN B 94 0 SHEET 2 H 2 THR B 236 CYS B 239 -1 O CYS B 239 N GLU B 91 SHEET 1 I 4 SER B 199 THR B 202 0 SHEET 2 I 4 VAL B 120 THR B 123 -1 N THR B 123 O SER B 199 SHEET 3 I 4 ARG B 432 ILE B 434 -1 O ARG B 432 N LEU B 122 SHEET 4 I 4 ILE B 423 ASN B 425 -1 N ILE B 424 O ALA B 433 SHEET 1 J 3 THR B 244 VAL B 245 0 SHEET 2 J 3 PHE B 223 LEU B 226 -1 N ILE B 225 O VAL B 245 SHEET 3 J 3 VAL B 488 GLU B 490 -1 O VAL B 489 N ALA B 224 SHEET 1 K 7 LEU B 259 LEU B 261 0 SHEET 2 K 7 ILE B 443 ARG B 456 -1 O THR B 450 N LEU B 260 SHEET 3 K 7 ILE B 284 ARG B 298 -1 N VAL B 286 O LEU B 452 SHEET 4 K 7 GLN B 328 ASN B 334 -1 O HIS B 330 N THR B 297 SHEET 5 K 7 THR B 413 ILE B 420 -1 O CYS B 418 N ALA B 329 SHEET 6 K 7 GLU B 381 CYS B 385 -1 N TYR B 384 O LYS B 419 SHEET 7 K 7 HIS B 374 CYS B 378 -1 N CYS B 378 O GLU B 381 SHEET 1 L 7 ILE B 271 SER B 274 0 SHEET 2 L 7 ILE B 284 ARG B 298 -1 O ILE B 285 N ARG B 273 SHEET 3 L 7 ILE B 443 ARG B 456 -1 O LEU B 452 N VAL B 286 SHEET 4 L 7 THR B 465 PRO B 470 -1 O ARG B 469 N LEU B 455 SHEET 5 L 7 THR B 358 PHE B 361 1 N LYS B 360 O PHE B 468 SHEET 6 L 7 GLY B 393 THR B 394 -1 O GLY B 393 N PHE B 361 SHEET 7 L 7 ASN B 404 HIS B 405 -1 O ASN B 404 N THR B 394 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 3 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 4 CYS A 228 CYS A 239 1555 1555 2.03 SSBOND 5 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 6 CYS A 378 CYS A 445 1555 1555 2.04 SSBOND 7 CYS A 385 CYS A 418 1555 1555 2.04 SSBOND 8 CYS B 54 CYS B 74 1555 1555 2.03 SSBOND 9 CYS B 119 CYS B 205 1555 1555 2.03 SSBOND 10 CYS B 218 CYS B 247 1555 1555 2.03 SSBOND 11 CYS B 228 CYS B 239 1555 1555 2.03 SSBOND 12 CYS B 296 CYS B 331 1555 1555 2.03 SSBOND 13 CYS B 378 CYS B 445 1555 1555 2.03 SSBOND 14 CYS B 385 CYS B 418 1555 1555 2.03 LINK ND2 ASN A 234 C1 NAG A 734 1555 1555 1.41 LINK ND2 ASN A 262 C1 NAG A 762 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 776 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 789 1555 1555 1.44 LINK ND2 ASN A 339 C1 NAG A 839 1555 1555 1.44 LINK ND2 ASN A 386 C1 NAG A 886 1555 1555 1.44 LINK ND2 ASN A 392 C1 NAG A 892 1555 1555 1.44 LINK ND2 ASN A 448 C1 NAG A 948 1555 1555 1.44 LINK ND2 ASN B 234 C1 NAG B 734 1555 1555 1.44 LINK ND2 ASN B 262 C1 NAG B 762 1555 1555 1.44 LINK ND2 ASN B 276 C1 NAG B 776 1555 1555 1.44 LINK ND2 ASN B 289 C1 NAG B 789 1555 1555 1.44 LINK ND2 ASN B 386 C1 NAG B 886 1555 1555 1.44 LINK ND2 ASN B 392 C1 NAG B 892 1555 1555 1.44 CISPEP 1 ASP A 78 PRO A 79 0 -2.38 CISPEP 2 ASP B 78 PRO B 79 0 -3.62 CRYST1 67.860 127.510 193.040 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005180 0.00000