HEADER IMMUNE SYSTEM 19-AUG-11 3THM TITLE CRYSTAL STRUCTURE OF FAS RECEPTOR EXTRACELLULAR DOMAIN IN COMPLEX WITH TITLE 2 FAB EP6B_B01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB EP6B_B01, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB EP6B_B01, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6; COMPND 11 CHAIN: F; COMPND 12 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 13 SYNONYM: APO-1 ANTIGEN, APOPTOSIS-MEDIATING SURFACE ANTIGEN FAS, COMPND 14 FASLG RECEPTOR; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 EXPRESSION_SYSTEM_CELL: CHO CELLS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 14 EXPRESSION_SYSTEM_CELL: CHO CELLS; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: APT1, FAS, FAS1, TNFRSF6; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AGONISTIC ANTIBODY, FAB FRAGMENT, ANTIBODY-RECEPTOR COMPLEX, TUMOR KEYWDS 2 NECROSIS FACTOR RECEPTOR, CYSTEINE-RICH DOMAIN, FAS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ZUGER,C.STIRNIMANN,C.BRIAND,M.G.GRUTTER REVDAT 5 13-SEP-23 3THM 1 HETSYN REVDAT 4 29-JUL-20 3THM 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-NOV-17 3THM 1 REMARK REVDAT 2 27-JUN-12 3THM 1 JRNL REVDAT 1 09-MAY-12 3THM 0 JRNL AUTH M.CHODORGE,S.ZUGER,C.STIRNIMANN,C.BRIAND,L.JERMUTUS, JRNL AUTH 2 M.G.GRUTTER,R.R.MINTER JRNL TITL A SERIES OF FAS RECEPTOR AGONIST ANTIBODIES THAT DEMONSTRATE JRNL TITL 2 AN INVERSE CORRELATION BETWEEN AFFINITY AND POTENCY. JRNL REF CELL DEATH DIFFER. V. 19 1187 2012 JRNL REFN ISSN 1350-9047 JRNL PMID 22261618 JRNL DOI 10.1038/CDD.2011.208 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2669 - 4.5232 1.00 4261 224 0.1976 0.1997 REMARK 3 2 4.5232 - 3.5906 1.00 4096 215 0.1657 0.2006 REMARK 3 3 3.5906 - 3.1368 1.00 4068 214 0.1843 0.2240 REMARK 3 4 3.1368 - 2.8500 1.00 4032 213 0.1714 0.2117 REMARK 3 5 2.8500 - 2.6458 1.00 4026 212 0.1826 0.2548 REMARK 3 6 2.6458 - 2.4898 1.00 3993 210 0.1897 0.2483 REMARK 3 7 2.4898 - 2.3651 1.00 3995 210 0.1787 0.2191 REMARK 3 8 2.3651 - 2.2622 1.00 4043 213 0.1824 0.2380 REMARK 3 9 2.2622 - 2.1751 1.00 3972 209 0.1960 0.2787 REMARK 3 10 2.1751 - 2.1000 1.00 3954 208 0.2070 0.2637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 41.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.650 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34500 REMARK 3 B22 (A**2) : -0.34500 REMARK 3 B33 (A**2) : 5.06330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4088 REMARK 3 ANGLE : 1.007 5548 REMARK 3 CHIRALITY : 0.063 632 REMARK 3 PLANARITY : 0.004 709 REMARK 3 DIHEDRAL : 14.799 1482 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN F AND RESID 36:45) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8358 -30.5981 11.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.5066 T22: 0.2092 REMARK 3 T33: 0.2921 T12: -0.1285 REMARK 3 T13: 0.0416 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 8.7106 L22: 6.0496 REMARK 3 L33: 3.2208 L12: -1.3446 REMARK 3 L13: -2.1809 L23: -3.6164 REMARK 3 S TENSOR REMARK 3 S11: -0.3677 S12: 0.7640 S13: -0.7780 REMARK 3 S21: -1.0985 S22: -0.1054 S23: -0.0993 REMARK 3 S31: 1.0920 S32: -0.1842 S33: 0.4486 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN F AND RESID 46:87) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4183 -29.8281 16.0013 REMARK 3 T TENSOR REMARK 3 T11: 0.4163 T22: 0.2130 REMARK 3 T33: 0.3346 T12: 0.0965 REMARK 3 T13: -0.0067 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 7.1917 L22: 3.3945 REMARK 3 L33: 3.7450 L12: 0.0639 REMARK 3 L13: -0.2787 L23: -0.4388 REMARK 3 S TENSOR REMARK 3 S11: -0.1732 S12: -0.0541 S13: -0.9708 REMARK 3 S21: 0.0281 S22: 0.1035 S23: -0.4100 REMARK 3 S31: 0.8960 S32: 0.3370 S33: 0.0655 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN F AND RESID 88:104) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7809 -23.4148 7.4522 REMARK 3 T TENSOR REMARK 3 T11: 0.4180 T22: 0.9063 REMARK 3 T33: 0.8765 T12: 0.1062 REMARK 3 T13: 0.2261 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.6971 L22: 4.0302 REMARK 3 L33: 0.8445 L12: -0.8422 REMARK 3 L13: 0.2185 L23: 1.6089 REMARK 3 S TENSOR REMARK 3 S11: -0.2897 S12: 0.2719 S13: 0.1987 REMARK 3 S21: -0.9473 S22: 0.0414 S23: -1.5490 REMARK 3 S31: -0.0401 S32: 1.5496 S33: 0.2194 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN F AND RESID 105:127) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5767 -20.7782 10.1059 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.7673 REMARK 3 T33: 0.7688 T12: 0.0971 REMARK 3 T13: 0.1213 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 5.7093 L22: 5.8501 REMARK 3 L33: 3.2371 L12: 1.3433 REMARK 3 L13: 0.5830 L23: -1.2047 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.1435 S13: 0.3409 REMARK 3 S21: -0.5669 S22: -0.6561 S23: -1.7645 REMARK 3 S31: -0.1607 S32: 1.4211 S33: 0.6343 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN H AND RESID 1:81) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3454 -21.5038 16.5512 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.2161 REMARK 3 T33: 0.1996 T12: -0.1341 REMARK 3 T13: -0.0158 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.4811 L22: 2.9484 REMARK 3 L33: 1.2718 L12: 0.6861 REMARK 3 L13: 0.4161 L23: -0.5811 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.2199 S13: 0.0332 REMARK 3 S21: -0.2003 S22: 0.2290 S23: 0.2945 REMARK 3 S31: 0.2248 S32: -0.3419 S33: -0.0814 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN H AND RESID 82:131) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6120 -17.0093 15.1141 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.1598 REMARK 3 T33: 0.2293 T12: -0.1062 REMARK 3 T13: -0.0171 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.8956 L22: 1.3116 REMARK 3 L33: 1.7544 L12: -0.3253 REMARK 3 L13: -0.8062 L23: 0.1881 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: 0.2500 S13: -0.0629 REMARK 3 S21: -0.0635 S22: 0.0993 S23: 0.2317 REMARK 3 S31: 0.1668 S32: -0.2853 S33: -0.1051 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN H AND RESID 132:233) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1524 15.0572 31.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.4084 REMARK 3 T33: 0.4566 T12: 0.0453 REMARK 3 T13: 0.0438 T23: 0.1623 REMARK 3 L TENSOR REMARK 3 L11: 3.2550 L22: 0.7247 REMARK 3 L33: 1.5096 L12: 0.1853 REMARK 3 L13: -0.0507 L23: -0.5792 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: 0.4893 S13: 0.6517 REMARK 3 S21: 0.0055 S22: 0.0757 S23: 0.0093 REMARK 3 S31: -0.4609 S32: -0.1462 S33: -0.0713 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN L AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6310 -7.5373 28.0339 REMARK 3 T TENSOR REMARK 3 T11: 0.3406 T22: 0.4199 REMARK 3 T33: 0.2105 T12: -0.0284 REMARK 3 T13: 0.0443 T23: -0.1092 REMARK 3 L TENSOR REMARK 3 L11: 7.0196 L22: 9.6231 REMARK 3 L33: 2.8938 L12: -4.9476 REMARK 3 L13: -3.3163 L23: -0.5160 REMARK 3 S TENSOR REMARK 3 S11: -0.3676 S12: -1.5025 S13: 0.6158 REMARK 3 S21: 1.9146 S22: -0.0226 S23: 0.7524 REMARK 3 S31: -0.2437 S32: -0.8305 S33: 0.3851 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN L AND RESID 5:112) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0085 -3.8792 14.2852 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1651 REMARK 3 T33: 0.1464 T12: -0.0608 REMARK 3 T13: -0.0189 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.7080 L22: 3.0845 REMARK 3 L33: 0.8924 L12: 0.0941 REMARK 3 L13: -0.3837 L23: 0.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: 0.0495 S13: 0.0593 REMARK 3 S21: -0.1428 S22: 0.1283 S23: 0.0794 REMARK 3 S31: 0.0562 S32: -0.1058 S33: -0.0705 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN L AND RESID 113:214) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7850 10.9228 36.1874 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.1754 REMARK 3 T33: 0.2177 T12: -0.0239 REMARK 3 T13: -0.0264 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.0418 L22: 1.7896 REMARK 3 L33: 4.4611 L12: 0.7538 REMARK 3 L13: -2.1329 L23: -1.3748 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: -0.2184 S13: 0.0779 REMARK 3 S21: 0.1866 S22: -0.0363 S23: -0.0297 REMARK 3 S31: -0.1513 S32: 0.1256 S33: -0.1099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3THM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.255 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3TJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 10% ISOPROPANOL, 100 MM REMARK 280 HEPES/NAOH, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.80000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.80000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, F, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 LYS H 148 REMARK 465 SER H 149 REMARK 465 THR H 150 REMARK 465 SER H 151 REMARK 465 GLY H 152 REMARK 465 SER H 234 REMARK 465 CYS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 HIS H 242 REMARK 465 HIS H 243 REMARK 465 HIS H 244 REMARK 465 HIS H 245 REMARK 465 ARG F 1 REMARK 465 LEU F 2 REMARK 465 SER F 3 REMARK 465 SER F 4 REMARK 465 LYS F 5 REMARK 465 SER F 6 REMARK 465 VAL F 7 REMARK 465 ASN F 8 REMARK 465 ALA F 9 REMARK 465 GLN F 10 REMARK 465 VAL F 11 REMARK 465 THR F 12 REMARK 465 ASP F 13 REMARK 465 ILE F 14 REMARK 465 ASN F 15 REMARK 465 SER F 16 REMARK 465 LYS F 17 REMARK 465 GLY F 18 REMARK 465 LEU F 19 REMARK 465 GLU F 20 REMARK 465 LEU F 21 REMARK 465 ARG F 22 REMARK 465 LYS F 23 REMARK 465 THR F 24 REMARK 465 VAL F 25 REMARK 465 THR F 26 REMARK 465 THR F 27 REMARK 465 VAL F 28 REMARK 465 GLU F 29 REMARK 465 THR F 30 REMARK 465 GLN F 31 REMARK 465 ASN F 32 REMARK 465 LEU F 33 REMARK 465 GLU F 34 REMARK 465 GLY F 35 REMARK 465 ASP F 92 REMARK 465 GLU F 93 REMARK 465 LYS F 122 REMARK 465 PRO F 123 REMARK 465 ASN F 124 REMARK 465 PHE F 125 REMARK 465 PHE F 126 REMARK 465 ASN F 128 REMARK 465 SER F 129 REMARK 465 THR F 130 REMARK 465 VAL F 131 REMARK 465 CYS F 132 REMARK 465 GLU F 133 REMARK 465 HIS F 134 REMARK 465 CYS F 135 REMARK 465 ASP F 136 REMARK 465 PRO F 137 REMARK 465 CYS F 138 REMARK 465 THR F 139 REMARK 465 LYS F 140 REMARK 465 CYS F 141 REMARK 465 GLU F 142 REMARK 465 HIS F 143 REMARK 465 GLY F 144 REMARK 465 ILE F 145 REMARK 465 ILE F 146 REMARK 465 LYS F 147 REMARK 465 GLU F 148 REMARK 465 CYS F 149 REMARK 465 THR F 150 REMARK 465 LEU F 151 REMARK 465 THR F 152 REMARK 465 SER F 153 REMARK 465 ASN F 154 REMARK 465 THR F 155 REMARK 465 LYS F 156 REMARK 465 CYS F 157 REMARK 465 LYS F 158 REMARK 465 GLU F 159 REMARK 465 GLU F 160 REMARK 465 GLY F 161 REMARK 465 SER F 162 REMARK 465 ARG F 163 REMARK 465 SER F 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG L 15 -8.99 72.60 REMARK 500 ASN L 28 -92.85 -129.83 REMARK 500 ASP L 52 -51.85 75.64 REMARK 500 ASP L 155 -107.02 56.26 REMARK 500 THR L 213 33.05 -87.14 REMARK 500 SER H 15 -22.85 82.33 REMARK 500 ASN H 32 -68.93 -147.85 REMARK 500 LYS H 45 -168.68 -112.39 REMARK 500 ASN H 60 52.95 36.79 REMARK 500 ALA H 98 164.14 178.71 REMARK 500 ASP H 163 73.83 59.24 REMARK 500 HIS F 95 37.75 -88.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TJE RELATED DB: PDB DBREF 3THM F 1 164 UNP P25445 TNR6_HUMAN 17 172 DBREF 3THM L 1 216 PDB 3THM 3THM 1 216 DBREF 3THM H 1 245 PDB 3THM 3THM 1 245 SEQRES 1 L 216 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER GLU ALA SEQRES 2 L 216 PRO ARG GLN THR VAL THR ILE SER CYS SER GLY ASN SER SEQRES 3 L 216 SER ASN ILE GLY ARG TYR PRO VAL ASN TRP TYR GLN GLN SEQRES 4 L 216 LEU PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ASP SEQRES 5 L 216 ASN LEU ARG PHE SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER LYS SER GLY THR THR ALA SER LEU ALA ILE ARG ASP SEQRES 7 L 216 LEU LEU SER GLU ASP GLU ALA ASP TYR TYR CYS SER THR SEQRES 8 L 216 TRP ASP ASP THR LEU GLU GLY TRP VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 245 GLN LEU GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 245 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 245 ALA SER ILE SER ALA ASN SER TYR TYR GLY VAL TRP VAL SEQRES 4 H 245 ARG GLN SER PRO GLY LYS GLY LEU GLU TRP VAL GLY SER SEQRES 5 H 245 ILE ALA TYR ARG GLY ASN SER ASN SER GLY SER THR TYR SEQRES 6 H 245 TYR ASN PRO SER LEU LYS SER ARG ALA THR VAL SER VAL SEQRES 7 H 245 ASP SER SER LYS ASN GLN VAL SER LEU ARG LEU THR SER SEQRES 8 H 245 VAL THR ALA ALA ASP THR ALA LEU TYR TYR CYS ALA ARG SEQRES 9 H 245 ARG GLN LEU LEU ASP ASP GLY THR GLY TYR GLN TRP ALA SEQRES 10 H 245 ALA PHE ASP VAL TRP GLY GLN GLY THR MET VAL THR VAL SEQRES 11 H 245 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 245 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 245 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 245 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 245 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 245 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 245 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 245 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 245 CYS HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 F 156 ARG LEU SER SER LYS SER VAL ASN ALA GLN VAL THR ASP SEQRES 2 F 156 ILE ASN SER LYS GLY LEU GLU LEU ARG LYS THR VAL THR SEQRES 3 F 156 THR VAL GLU THR GLN ASN LEU GLU GLY LEU HIS HIS ASP SEQRES 4 F 156 GLY GLN PHE CYS HIS LYS PRO CYS PRO PRO GLY GLU ARG SEQRES 5 F 156 LYS ALA ARG ASP CYS THR VAL ASN GLY ASP GLU PRO ASP SEQRES 6 F 156 CYS VAL PRO CYS GLN GLU GLY LYS GLU TYR THR ASP LYS SEQRES 7 F 156 ALA HIS PHE SER SER LYS CYS ARG ARG CYS ARG LEU CYS SEQRES 8 F 156 ASP GLU GLY HIS GLY LEU GLU VAL GLU ILE ASN CYS THR SEQRES 9 F 156 ARG THR GLN ASN THR LYS CYS ARG CYS LYS PRO ASN PHE SEQRES 10 F 156 PHE CYS ASN SER THR VAL CYS GLU HIS CYS ASP PRO CYS SEQRES 11 F 156 THR LYS CYS GLU HIS GLY ILE ILE LYS GLU CYS THR LEU SEQRES 12 F 156 THR SER ASN THR LYS CYS LYS GLU GLU GLY SER ARG SER MODRES 3THM ASN L 25 ASN GLYCOSYLATION SITE HET NAG A 1 26 HET NAG A 2 27 HET FUC A 3 21 HET EDO L 217 10 HET EDO L 218 10 HET EDO L 219 10 HET EDO L 220 10 HET EDO L 221 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 HOH *337(H2 O) HELIX 1 1 LEU L 80 GLU L 84 5 5 HELIX 2 2 SER L 125 ALA L 131 1 7 HELIX 3 3 THR L 185 SER L 191 1 7 HELIX 4 4 PRO H 68 LYS H 71 5 4 HELIX 5 5 SER H 80 LYS H 82 5 3 HELIX 6 6 THR H 93 THR H 97 5 5 HELIX 7 7 SER H 175 ALA H 177 5 3 HELIX 8 8 SER H 206 GLN H 211 1 6 HELIX 9 9 LYS H 220 ASN H 223 5 4 SHEET 1 A 6 SER L 9 GLU L 12 0 SHEET 2 A 6 THR L 105 VAL L 109 1 O LYS L 106 N VAL L 10 SHEET 3 A 6 ALA L 85 ASP L 93 -1 N ALA L 85 O VAL L 107 SHEET 4 A 6 ASN L 35 GLN L 39 -1 N GLN L 39 O ASP L 86 SHEET 5 A 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 A 6 LEU L 54 ARG L 55 -1 O LEU L 54 N TYR L 50 SHEET 1 B 4 SER L 9 GLU L 12 0 SHEET 2 B 4 THR L 105 VAL L 109 1 O LYS L 106 N VAL L 10 SHEET 3 B 4 ALA L 85 ASP L 93 -1 N ALA L 85 O VAL L 107 SHEET 4 B 4 GLY L 98 PHE L 101 -1 O VAL L 100 N THR L 91 SHEET 1 C 3 VAL L 18 SER L 23 0 SHEET 2 C 3 THR L 71 ILE L 76 -1 O ALA L 72 N CYS L 22 SHEET 3 C 3 PHE L 63 SER L 68 -1 N SER L 66 O SER L 73 SHEET 1 D 4 SER L 118 PHE L 122 0 SHEET 2 D 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 D 4 TYR L 176 LEU L 184 -1 O LEU L 184 N ALA L 134 SHEET 4 D 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 E 4 SER L 118 PHE L 122 0 SHEET 2 E 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 E 4 TYR L 176 LEU L 184 -1 O LEU L 184 N ALA L 134 SHEET 4 E 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 F 4 SER L 157 VAL L 159 0 SHEET 2 F 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 F 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 F 4 SER L 204 VAL L 210 -1 O VAL L 206 N VAL L 199 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 G 4 GLN H 84 LEU H 89 -1 O LEU H 89 N LEU H 18 SHEET 4 G 4 ALA H 74 ASP H 79 -1 N SER H 77 O SER H 86 SHEET 1 H 6 LEU H 11 VAL H 12 0 SHEET 2 H 6 THR H 126 VAL H 130 1 O THR H 129 N VAL H 12 SHEET 3 H 6 ALA H 98 ASP H 109 -1 N TYR H 100 O THR H 126 SHEET 4 H 6 SER H 33 GLN H 41 -1 N VAL H 39 O TYR H 101 SHEET 5 H 6 LEU H 47 ARG H 56 -1 O TYR H 55 N TYR H 34 SHEET 6 H 6 SER H 61 TYR H 66 -1 O SER H 61 N ARG H 56 SHEET 1 I 4 LEU H 11 VAL H 12 0 SHEET 2 I 4 THR H 126 VAL H 130 1 O THR H 129 N VAL H 12 SHEET 3 I 4 ALA H 98 ASP H 109 -1 N TYR H 100 O THR H 126 SHEET 4 I 4 GLN H 115 TRP H 122 -1 O TRP H 116 N LEU H 108 SHEET 1 J 4 SER H 139 LEU H 143 0 SHEET 2 J 4 THR H 154 TYR H 164 -1 O GLY H 158 N LEU H 143 SHEET 3 J 4 TYR H 195 PRO H 204 -1 O VAL H 201 N LEU H 157 SHEET 4 J 4 VAL H 182 THR H 184 -1 N HIS H 183 O VAL H 200 SHEET 1 K 4 SER H 139 LEU H 143 0 SHEET 2 K 4 THR H 154 TYR H 164 -1 O GLY H 158 N LEU H 143 SHEET 3 K 4 TYR H 195 PRO H 204 -1 O VAL H 201 N LEU H 157 SHEET 4 K 4 VAL H 188 LEU H 189 -1 N VAL H 188 O SER H 196 SHEET 1 L 3 THR H 170 TRP H 173 0 SHEET 2 L 3 ILE H 214 HIS H 219 -1 O ASN H 216 N SER H 172 SHEET 3 L 3 THR H 224 LYS H 229 -1 O VAL H 226 N VAL H 217 SHEET 1 M 2 GLU F 51 LYS F 53 0 SHEET 2 M 2 CYS F 66 PRO F 68 -1 O VAL F 67 N ARG F 52 SHEET 1 N 2 GLU F 74 TYR F 75 0 SHEET 2 N 2 ARG F 86 ARG F 87 -1 O ARG F 86 N TYR F 75 SHEET 1 O 2 GLU F 98 ILE F 101 0 SHEET 2 O 2 LYS F 110 ARG F 112 -1 O ARG F 112 N GLU F 98 SSBOND 1 CYS L 22 CYS L 89 1555 1555 2.06 SSBOND 2 CYS L 138 CYS L 197 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 102 1555 1555 2.06 SSBOND 4 CYS H 159 CYS H 215 1555 1555 2.04 SSBOND 5 CYS F 43 CYS F 57 1555 1555 2.03 SSBOND 6 CYS F 47 CYS F 66 1555 1555 2.03 SSBOND 7 CYS F 69 CYS F 85 1555 1555 2.04 SSBOND 8 CYS F 88 CYS F 103 1555 1555 2.03 SSBOND 9 CYS F 91 CYS F 111 1555 1555 2.04 SSBOND 10 CYS F 113 CYS F 127 1555 1555 2.04 LINK ND2 ASN L 25 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.42 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.42 CISPEP 1 TYR L 144 PRO L 145 0 -2.37 CISPEP 2 PHE H 165 PRO H 166 0 -6.30 CISPEP 3 GLU H 167 PRO H 168 0 3.09 CRYST1 94.510 94.510 139.200 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010581 0.006109 0.000000 0.00000 SCALE2 0.000000 0.012218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007184 0.00000