HEADER HYDROLASE/HYDROLASE INHIBITOR 20-AUG-11 3TI4 TITLE CRYSTAL STRUCTURE OF 2009 PANDEMIC H1N1 NEURAMINIDASE COMPLEXED WITH TITLE 2 LANINAMIVIR OCTANOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 82-469; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: A/CALIFORNIA/04/2009(H1N1); SOURCE 5 GENE: NA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACGP67-B KEYWDS 6-BLADED BETA-PROPELLER, CALCIUM BINDING, GLYCOSYLATION, ANTIVIRAL, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.J.VAVRICKA,Q.LI,Y.WU,J.QI,M.WANG,Y.LIU,F.GAO,J.LIU,E.FENG,J.HE, AUTHOR 2 J.WANG,H.LIU,H.JIANG,G.F.GAO REVDAT 3 01-NOV-23 3TI4 1 HETSYN REVDAT 2 29-JUL-20 3TI4 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 16-NOV-11 3TI4 0 JRNL AUTH C.J.VAVRICKA,Q.LI,Y.WU,J.QI,M.WANG,Y.LIU,F.GAO,J.LIU,E.FENG, JRNL AUTH 2 J.HE,J.WANG,H.LIU,H.JIANG,G.F.GAO JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF LANINAMIVIR AND ITS JRNL TITL 2 OCTANOATE PRODRUG REVEALS GROUP SPECIFIC MECHANISMS FOR JRNL TITL 3 INFLUENZA NA INHIBITION JRNL REF PLOS PATHOG. V. 7 02249 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 22028647 JRNL DOI 10.1371/JOURNAL.PPAT.1002249 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 122842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8980 - 4.9671 0.98 4132 217 0.1977 0.2260 REMARK 3 2 4.9671 - 3.9470 1.00 4062 214 0.1424 0.1610 REMARK 3 3 3.9470 - 3.4494 1.00 4086 212 0.1418 0.1575 REMARK 3 4 3.4494 - 3.1346 1.00 4005 225 0.1429 0.1497 REMARK 3 5 3.1346 - 2.9103 1.00 4029 206 0.1495 0.1576 REMARK 3 6 2.9103 - 2.7389 0.99 3995 214 0.1537 0.1904 REMARK 3 7 2.7389 - 2.6018 0.99 3994 197 0.1517 0.1844 REMARK 3 8 2.6018 - 2.4887 0.99 3990 203 0.1482 0.1980 REMARK 3 9 2.4887 - 2.3929 0.99 3968 219 0.1386 0.1716 REMARK 3 10 2.3929 - 2.3104 0.99 3975 209 0.1357 0.1795 REMARK 3 11 2.3104 - 2.2382 0.99 3906 242 0.1324 0.1773 REMARK 3 12 2.2382 - 2.1743 0.99 3966 194 0.1307 0.1849 REMARK 3 13 2.1743 - 2.1171 0.99 3937 205 0.1243 0.1641 REMARK 3 14 2.1171 - 2.0654 0.99 3967 199 0.1182 0.1600 REMARK 3 15 2.0654 - 2.0185 0.99 3889 198 0.1132 0.1503 REMARK 3 16 2.0185 - 1.9756 0.99 3941 223 0.1156 0.1520 REMARK 3 17 1.9756 - 1.9360 0.98 3922 195 0.1185 0.1457 REMARK 3 18 1.9360 - 1.8995 0.98 3932 194 0.1155 0.1530 REMARK 3 19 1.8995 - 1.8656 0.98 3851 205 0.1176 0.1656 REMARK 3 20 1.8656 - 1.8340 0.97 3908 209 0.1173 0.1767 REMARK 3 21 1.8340 - 1.8044 0.97 3829 206 0.1194 0.1624 REMARK 3 22 1.8044 - 1.7767 0.96 3791 190 0.1240 0.1813 REMARK 3 23 1.7767 - 1.7505 0.96 3846 202 0.1187 0.1897 REMARK 3 24 1.7505 - 1.7259 0.96 3800 206 0.1197 0.1663 REMARK 3 25 1.7259 - 1.7026 0.95 3782 177 0.1190 0.1866 REMARK 3 26 1.7026 - 1.6805 0.94 3713 198 0.1202 0.1954 REMARK 3 27 1.6805 - 1.6595 0.94 3731 203 0.1198 0.1673 REMARK 3 28 1.6595 - 1.6395 0.94 3714 215 0.1216 0.1798 REMARK 3 29 1.6395 - 1.6204 0.93 3655 205 0.1217 0.1855 REMARK 3 30 1.6204 - 1.6022 0.85 3365 179 0.1321 0.2036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 42.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02290 REMARK 3 B22 (A**2) : 2.11190 REMARK 3 B33 (A**2) : -2.13480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6393 REMARK 3 ANGLE : 1.069 8682 REMARK 3 CHIRALITY : 0.073 928 REMARK 3 PLANARITY : 0.008 1123 REMARK 3 DIHEDRAL : 21.881 2329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NSS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M CALCIUM ACETATE HYDRATE, 0.08M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, 14.4% POLYETHYLENE GLYCOL 8000, 20% REMARK 280 GLYCEROL , PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.28550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.28550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.33200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.55100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.33200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.55100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.28550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.33200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.55100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.28550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.33200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.55100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 118.66400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -59.28550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 651 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 750 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 470 REMARK 465 LYS B 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 146 O5 NAG B 501 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 225 -155.24 -132.93 REMARK 500 ALA A 250 -168.46 -124.93 REMARK 500 ASN A 272 -0.85 76.70 REMARK 500 ASP A 283 109.12 -161.42 REMARK 500 CYS A 291 -164.27 -129.10 REMARK 500 HIS A 296 37.80 -161.72 REMARK 500 LYS A 331 -165.34 -164.41 REMARK 500 ASN A 347 -172.91 66.91 REMARK 500 SER A 404 -136.36 -120.66 REMARK 500 TRP A 456 -164.12 -165.48 REMARK 500 TRP A 458 76.49 -117.78 REMARK 500 THR B 225 -154.82 -133.10 REMARK 500 ASN B 272 -0.37 76.90 REMARK 500 ASP B 283 109.62 -161.91 REMARK 500 CYS B 291 -163.88 -128.27 REMARK 500 HIS B 296 37.96 -160.57 REMARK 500 LYS B 331 -169.78 -162.74 REMARK 500 ASN B 347 -172.20 67.08 REMARK 500 SER B 404 -136.59 -121.30 REMARK 500 TRP B 456 -163.56 -164.30 REMARK 500 TRP B 458 76.27 -118.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LVO A 801 REMARK 610 LVO B 801 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 5 O REMARK 620 2 ASP A 293 O 178.9 REMARK 620 3 GLY A 297 O 94.5 86.0 REMARK 620 4 ASP A 324 OD2 89.5 91.5 88.9 REMARK 620 5 GLY A 345 O 82.9 96.1 83.1 168.5 REMARK 620 6 ASN A 347 O 90.6 88.7 169.8 100.0 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 379 OD1 REMARK 620 2 ASP A 379 OD2 49.0 REMARK 620 3 ASN A 381 OD1 76.6 105.7 REMARK 620 4 ASP A 387 OD1 172.9 130.4 109.3 REMARK 620 5 ASN A 389 O 84.9 77.4 150.7 88.1 REMARK 620 6 HOH A 488 O 108.1 73.3 83.5 76.9 124.3 REMARK 620 7 HOH A 744 O 84.1 128.0 78.3 93.2 77.4 155.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 651 O REMARK 620 2 HOH A 717 O 115.6 REMARK 620 3 HOH A 732 O 112.3 76.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 8 O REMARK 620 2 ASP B 293 O 179.1 REMARK 620 3 GLY B 297 O 93.1 87.5 REMARK 620 4 ASP B 324 OD2 87.6 93.1 89.7 REMARK 620 5 GLY B 345 O 82.3 97.2 83.4 167.4 REMARK 620 6 ASN B 347 O 89.8 89.4 170.7 99.2 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 24 O REMARK 620 2 ASP B 379 OD1 107.6 REMARK 620 3 ASP B 379 OD2 73.1 49.5 REMARK 620 4 ASN B 381 OD1 82.5 78.5 108.0 REMARK 620 5 ASP B 387 OD1 78.7 170.5 128.7 109.8 REMARK 620 6 ASN B 389 O 125.6 84.4 77.2 150.7 86.1 REMARK 620 7 HOH B 610 O 153.7 84.2 128.8 76.7 93.1 78.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NSS RELATED DB: PDB REMARK 900 THE 2009 PANDEMIC H1N1 NEURAMINIDASE N1 LACKS THE 150-CAVITY IN ITS REMARK 900 ACTIVE SITES REMARK 900 RELATED ID: 3TI3 RELATED DB: PDB REMARK 900 RELATED ID: 3TI5 RELATED DB: PDB REMARK 900 RELATED ID: 3TI6 RELATED DB: PDB REMARK 900 RELATED ID: 3TI8 RELATED DB: PDB REMARK 900 RELATED ID: 3TIA RELATED DB: PDB REMARK 900 RELATED ID: 3TIB RELATED DB: PDB REMARK 900 RELATED ID: 3TIC RELATED DB: PDB DBREF 3TI4 A 82 470 UNP C3W5S3 C3W5S3_I09A0 82 469 DBREF 3TI4 B 82 470 UNP C3W5S3 C3W5S3_I09A0 82 469 SEQRES 1 A 388 SER VAL LYS LEU ALA GLY ASN SER SER LEU CYS PRO VAL SEQRES 2 A 388 SER GLY TRP ALA ILE TYR SER LYS ASP ASN SER VAL ARG SEQRES 3 A 388 ILE GLY SER LYS GLY ASP VAL PHE VAL ILE ARG GLU PRO SEQRES 4 A 388 PHE ILE SER CYS SER PRO LEU GLU CYS ARG THR PHE PHE SEQRES 5 A 388 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 A 388 GLY THR ILE LYS ASP ARG SER PRO TYR ARG THR LEU MET SEQRES 7 A 388 SER CYS PRO ILE GLY GLU VAL PRO SER PRO TYR ASN SER SEQRES 8 A 388 ARG PHE GLU SER VAL ALA TRP SER ALA SER ALA CYS HIS SEQRES 9 A 388 ASP GLY ILE ASN TRP LEU THR ILE GLY ILE SER GLY PRO SEQRES 10 A 388 ASP ASN GLY ALA VAL ALA VAL LEU LYS TYR ASN GLY ILE SEQRES 11 A 388 ILE THR ASP THR ILE LYS SER TRP ARG ASN ASN ILE LEU SEQRES 12 A 388 ARG THR GLN GLU SER GLU CYS ALA CYS VAL ASN GLY SER SEQRES 13 A 388 CYS PHE THR VAL MET THR ASP GLY PRO SER ASN GLY GLN SEQRES 14 A 388 ALA SER TYR LYS ILE PHE ARG ILE GLU LYS GLY LYS ILE SEQRES 15 A 388 VAL LYS SER VAL GLU MET ASN ALA PRO ASN TYR HIS TYR SEQRES 16 A 388 GLU GLU CYS SER CYS TYR PRO ASP SER SER GLU ILE THR SEQRES 17 A 388 CYS VAL CYS ARG ASP ASN TRP HIS GLY SER ASN ARG PRO SEQRES 18 A 388 TRP VAL SER PHE ASN GLN ASN LEU GLU TYR GLN ILE GLY SEQRES 19 A 388 TYR ILE CYS SER GLY ILE PHE GLY ASP ASN PRO ARG PRO SEQRES 20 A 388 ASN ASP LYS THR GLY SER CYS GLY PRO VAL SER SER ASN SEQRES 21 A 388 GLY ALA ASN GLY VAL LYS GLY PHE SER PHE LYS TYR GLY SEQRES 22 A 388 ASN GLY VAL TRP ILE GLY ARG THR LYS SER ILE SER SER SEQRES 23 A 388 ARG ASN GLY PHE GLU MET ILE TRP ASP PRO ASN GLY TRP SEQRES 24 A 388 THR GLY THR ASP ASN ASN PHE SER ILE LYS GLN ASP ILE SEQRES 25 A 388 VAL GLY ILE ASN GLU TRP SER GLY TYR SER GLY SER PHE SEQRES 26 A 388 VAL GLN HIS PRO GLU LEU THR GLY LEU ASP CYS ILE ARG SEQRES 27 A 388 PRO CYS PHE TRP VAL GLU LEU ILE ARG GLY ARG PRO LYS SEQRES 28 A 388 GLU ASN THR ILE TRP THR SER GLY SER SER ILE SER PHE SEQRES 29 A 388 CYS GLY VAL ASN SER ASP THR VAL GLY TRP SER TRP PRO SEQRES 30 A 388 ASP GLY ALA GLU LEU PRO PHE THR ILE ASP LYS SEQRES 1 B 388 SER VAL LYS LEU ALA GLY ASN SER SER LEU CYS PRO VAL SEQRES 2 B 388 SER GLY TRP ALA ILE TYR SER LYS ASP ASN SER VAL ARG SEQRES 3 B 388 ILE GLY SER LYS GLY ASP VAL PHE VAL ILE ARG GLU PRO SEQRES 4 B 388 PHE ILE SER CYS SER PRO LEU GLU CYS ARG THR PHE PHE SEQRES 5 B 388 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 B 388 GLY THR ILE LYS ASP ARG SER PRO TYR ARG THR LEU MET SEQRES 7 B 388 SER CYS PRO ILE GLY GLU VAL PRO SER PRO TYR ASN SER SEQRES 8 B 388 ARG PHE GLU SER VAL ALA TRP SER ALA SER ALA CYS HIS SEQRES 9 B 388 ASP GLY ILE ASN TRP LEU THR ILE GLY ILE SER GLY PRO SEQRES 10 B 388 ASP ASN GLY ALA VAL ALA VAL LEU LYS TYR ASN GLY ILE SEQRES 11 B 388 ILE THR ASP THR ILE LYS SER TRP ARG ASN ASN ILE LEU SEQRES 12 B 388 ARG THR GLN GLU SER GLU CYS ALA CYS VAL ASN GLY SER SEQRES 13 B 388 CYS PHE THR VAL MET THR ASP GLY PRO SER ASN GLY GLN SEQRES 14 B 388 ALA SER TYR LYS ILE PHE ARG ILE GLU LYS GLY LYS ILE SEQRES 15 B 388 VAL LYS SER VAL GLU MET ASN ALA PRO ASN TYR HIS TYR SEQRES 16 B 388 GLU GLU CYS SER CYS TYR PRO ASP SER SER GLU ILE THR SEQRES 17 B 388 CYS VAL CYS ARG ASP ASN TRP HIS GLY SER ASN ARG PRO SEQRES 18 B 388 TRP VAL SER PHE ASN GLN ASN LEU GLU TYR GLN ILE GLY SEQRES 19 B 388 TYR ILE CYS SER GLY ILE PHE GLY ASP ASN PRO ARG PRO SEQRES 20 B 388 ASN ASP LYS THR GLY SER CYS GLY PRO VAL SER SER ASN SEQRES 21 B 388 GLY ALA ASN GLY VAL LYS GLY PHE SER PHE LYS TYR GLY SEQRES 22 B 388 ASN GLY VAL TRP ILE GLY ARG THR LYS SER ILE SER SER SEQRES 23 B 388 ARG ASN GLY PHE GLU MET ILE TRP ASP PRO ASN GLY TRP SEQRES 24 B 388 THR GLY THR ASP ASN ASN PHE SER ILE LYS GLN ASP ILE SEQRES 25 B 388 VAL GLY ILE ASN GLU TRP SER GLY TYR SER GLY SER PHE SEQRES 26 B 388 VAL GLN HIS PRO GLU LEU THR GLY LEU ASP CYS ILE ARG SEQRES 27 B 388 PRO CYS PHE TRP VAL GLU LEU ILE ARG GLY ARG PRO LYS SEQRES 28 B 388 GLU ASN THR ILE TRP THR SER GLY SER SER ILE SER PHE SEQRES 29 B 388 CYS GLY VAL ASN SER ASP THR VAL GLY TRP SER TRP PRO SEQRES 30 B 388 ASP GLY ALA GLU LEU PRO PHE THR ILE ASP LYS MODRES 3TI4 ASN B 146 ASN GLYCOSYLATION SITE MODRES 3TI4 ASN B 88 ASN GLYCOSYLATION SITE MODRES 3TI4 ASN A 88 ASN GLYCOSYLATION SITE MODRES 3TI4 ASN A 146 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG A 505 14 HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET LVO A 801 26 HET ACT A 1 4 HET ACT A 471 4 HET NAG B 501 14 HET NAG B 505 14 HET CA B 601 1 HET CA B 602 1 HET LVO B 801 26 HET ACT B 1 4 HET ACT B 471 4 HET GOL B 472 6 HET GOL B 473 6 HET ACT B 474 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM LVO 5-ACETAMIDO-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5- HETNAM 2 LVO TRIDEOXY-7-O-METHYL-9-O-OCTANOYL-D-GLYCERO-D-GALACTO- HETNAM 3 LVO NON-2-ENONIC ACID HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN LVO 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5- HETSYN 2 LVO TRIDEOXY-7-O-METHYL-9-O-OCTANOYL-D-GLYCERO-D-GALACTO- HETSYN 3 LVO NON-2-ENONIC ACID; LANINAMIVIR OCTANOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 5 CA 5(CA 2+) FORMUL 8 LVO 2(C21 H36 N4 O8) FORMUL 9 ACT 5(C2 H3 O2 1-) FORMUL 18 GOL 2(C3 H8 O3) FORMUL 21 HOH *1223(H2 O) HELIX 1 1 ASN A 104 SER A 110 1 7 HELIX 2 2 ASP A 142 ASN A 146 5 5 HELIX 3 3 HIS A 412A GLY A 414 1 6 HELIX 4 4 ASN B 104 SER B 110 1 7 HELIX 5 5 ASP B 142 ASN B 146 5 5 HELIX 6 6 HIS B 412A GLY B 414 1 6 SHEET 1 A 4 GLY A 96 LYS A 102 0 SHEET 2 A 4 THR A 439 VAL A 449 -1 O SER A 445 N TYR A 100 SHEET 3 A 4 ARG A 419 GLY A 429 -1 N ARG A 428 O SER A 440 SHEET 4 A 4 SER A 407 GLN A 412 -1 N PHE A 410 O CYS A 421 SHEET 1 B 4 PHE A 115 CYS A 124 0 SHEET 2 B 4 CYS A 129 LEU A 139 -1 O PHE A 132 N PHE A 121 SHEET 3 B 4 THR A 157 PRO A 162 -1 O CYS A 161 N THR A 131 SHEET 4 B 4 ARG A 172 VAL A 176 -1 O ARG A 172 N SER A 160 SHEET 1 C 4 SER A 179 HIS A 184 0 SHEET 2 C 4 TRP A 189 SER A 195 -1 O LEU A 190 N CYS A 183 SHEET 3 C 4 VAL A 202 TYR A 207 -1 O VAL A 204 N GLY A 193 SHEET 4 C 4 ILE A 210 LYS A 216 -1 O ILE A 215 N ALA A 203 SHEET 1 D 4 ALA A 231 VAL A 233 0 SHEET 2 D 4 SER A 236 ASP A 243 -1 O SER A 236 N VAL A 233 SHEET 3 D 4 SER A 251 GLU A 258 -1 O ILE A 257 N CYS A 237 SHEET 4 D 4 LYS A 261 GLU A 267 -1 O LYS A 264 N ARG A 256 SHEET 1 E 4 GLU A 276 ASP A 283 0 SHEET 2 E 4 GLU A 286 ARG A 292 -1 O VAL A 290 N SER A 279 SHEET 3 E 4 PRO A 301 PHE A 305 -1 O PHE A 305 N ILE A 287 SHEET 4 E 4 TYR A 312 TYR A 316 -1 O GLY A 315 N TRP A 302 SHEET 1 F 4 SER A 353 TYR A 356 0 SHEET 2 F 4 GLY A 359 ARG A 364 -1 O GLY A 359 N TYR A 356 SHEET 3 F 4 ASN A 372 ASP A 379 -1 O ILE A 377 N ILE A 362 SHEET 4 F 4 ILE A 392 TRP A 403 -1 O GLN A 395 N MET A 376 SHEET 1 G 4 GLY B 96 LYS B 102 0 SHEET 2 G 4 THR B 439 VAL B 449 -1 O SER B 445 N TYR B 100 SHEET 3 G 4 ARG B 419 GLY B 429 -1 N ARG B 428 O SER B 440 SHEET 4 G 4 SER B 407 GLN B 412 -1 N GLN B 412 O ARG B 419 SHEET 1 H 4 PHE B 115 CYS B 124 0 SHEET 2 H 4 CYS B 129 LEU B 139 -1 O PHE B 132 N PHE B 121 SHEET 3 H 4 THR B 157 PRO B 162 -1 O CYS B 161 N THR B 131 SHEET 4 H 4 ARG B 172 VAL B 176 -1 O ARG B 172 N SER B 160 SHEET 1 I 4 SER B 179 HIS B 184 0 SHEET 2 I 4 TRP B 189 SER B 195 -1 O LEU B 190 N CYS B 183 SHEET 3 I 4 VAL B 202 TYR B 207 -1 O VAL B 204 N GLY B 193 SHEET 4 I 4 ILE B 210 LYS B 216 -1 O ILE B 215 N ALA B 203 SHEET 1 J 4 ALA B 231 VAL B 233 0 SHEET 2 J 4 SER B 236 ASP B 243 -1 O SER B 236 N VAL B 233 SHEET 3 J 4 SER B 251 GLU B 258 -1 O ILE B 257 N CYS B 237 SHEET 4 J 4 LYS B 261 GLU B 267 -1 O LYS B 264 N ARG B 256 SHEET 1 K 4 GLU B 276 ASP B 283 0 SHEET 2 K 4 GLU B 286 ARG B 292 -1 O VAL B 290 N SER B 279 SHEET 3 K 4 PRO B 301 PHE B 305 -1 O PHE B 305 N ILE B 287 SHEET 4 K 4 TYR B 312 TYR B 316 -1 O GLY B 315 N TRP B 302 SHEET 1 L 4 SER B 353 TYR B 356 0 SHEET 2 L 4 GLY B 359 ARG B 364 -1 O GLY B 359 N TYR B 356 SHEET 3 L 4 ASN B 372 ASP B 379 -1 O ILE B 377 N ILE B 362 SHEET 4 L 4 ILE B 392 TRP B 403 -1 O GLN B 395 N MET B 376 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.03 SSBOND 2 CYS A 124 CYS A 129 1555 1555 1.99 SSBOND 3 CYS A 183 CYS A 230 1555 1555 2.02 SSBOND 4 CYS A 232 CYS A 237 1555 1555 2.03 SSBOND 5 CYS A 278 CYS A 291 1555 1555 2.04 SSBOND 6 CYS A 280 CYS A 289 1555 1555 2.03 SSBOND 7 CYS A 318 CYS A 336 1555 1555 2.03 SSBOND 8 CYS A 421 CYS A 447 1555 1555 2.02 SSBOND 9 CYS B 92 CYS B 417 1555 1555 2.03 SSBOND 10 CYS B 124 CYS B 129 1555 1555 2.04 SSBOND 11 CYS B 183 CYS B 230 1555 1555 2.03 SSBOND 12 CYS B 232 CYS B 237 1555 1555 2.03 SSBOND 13 CYS B 278 CYS B 291 1555 1555 2.04 SSBOND 14 CYS B 280 CYS B 289 1555 1555 2.03 SSBOND 15 CYS B 318 CYS B 336 1555 1555 2.03 SSBOND 16 CYS B 421 CYS B 447 1555 1555 2.04 LINK ND2 ASN A 88 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 146 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 88 C1 NAG B 505 1555 1555 1.44 LINK ND2 ASN B 146 C1 NAG B 501 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O HOH A 5 CA CA A 601 1555 1555 2.48 LINK O ASP A 293 CA CA A 601 1555 1555 2.38 LINK O GLY A 297 CA CA A 601 1555 1555 2.44 LINK OD2 ASP A 324 CA CA A 601 1555 1555 2.40 LINK O GLY A 345 CA CA A 601 1555 1555 2.45 LINK O ASN A 347 CA CA A 601 1555 1555 2.42 LINK OD1 ASP A 379 CA CA A 602 1555 1555 2.46 LINK OD2 ASP A 379 CA CA A 602 1555 1555 2.80 LINK OD1 ASN A 381 CA CA A 602 1555 1555 2.38 LINK OD1 ASP A 387 CA CA A 602 1555 1555 2.46 LINK O ASN A 389 CA CA A 602 1555 1555 2.46 LINK O HOH A 488 CA CA A 602 1555 1555 2.52 LINK CA CA A 602 O HOH A 744 1555 1555 2.50 LINK CA CA A 603 O HOH A 651 1555 1555 2.14 LINK CA CA A 603 O HOH A 717 1555 1555 2.39 LINK CA CA A 603 O HOH A 732 1555 1555 2.48 LINK O HOH B 8 CA CA B 601 1555 1555 2.50 LINK O HOH B 24 CA CA B 602 1555 1555 2.49 LINK O ASP B 293 CA CA B 601 1555 1555 2.38 LINK O GLY B 297 CA CA B 601 1555 1555 2.42 LINK OD2 ASP B 324 CA CA B 601 1555 1555 2.38 LINK O GLY B 345 CA CA B 601 1555 1555 2.44 LINK O ASN B 347 CA CA B 601 1555 1555 2.34 LINK OD1 ASP B 379 CA CA B 602 1555 1555 2.43 LINK OD2 ASP B 379 CA CA B 602 1555 1555 2.79 LINK OD1 ASN B 381 CA CA B 602 1555 1555 2.42 LINK OD1 ASP B 387 CA CA B 602 1555 1555 2.47 LINK O ASN B 389 CA CA B 602 1555 1555 2.49 LINK CA CA B 602 O HOH B 610 1555 1555 2.49 CISPEP 1 ASN A 325 PRO A 326 0 4.26 CISPEP 2 ARG A 430 PRO A 431 0 5.66 CISPEP 3 LEU A 464 PRO A 465 0 -0.23 CISPEP 4 ASN B 325 PRO B 326 0 4.23 CISPEP 5 ARG B 430 PRO B 431 0 4.62 CISPEP 6 LEU B 464 PRO B 465 0 -0.62 CRYST1 118.664 137.102 118.571 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008434 0.00000