HEADER IMMUNE SYSTEM 20-AUG-11 3TIE TITLE CRYSTAL STRUCTURE OF THE VACCINIA DERIVED PEPTIDE A11R IN COMPLEX WITH TITLE 2 THE MURINE MHC CLASS I H-2 KB COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-297; COMPND 5 SYNONYM: H-2K(B); COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B, E; COMPND 10 FRAGMENT: UNP RESIDUES 21-119; COMPND 11 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: VACCINIA DERIVED OCTAMER PEPTIDE; COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-K1, H2-K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 18 ORGANISM_TAXID: 10245 KEYWDS ANTIGEN PRESENTATION, PEPTIDE BINDING, IGG, MHC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.T.NGUYEN,Z.T.SHEN,L.J.STERN REVDAT 4 27-NOV-24 3TIE 1 REMARK REVDAT 3 27-DEC-23 3TIE 1 SEQADV LINK REVDAT 2 11-MAY-16 3TIE 1 JRNL REVDAT 1 22-AUG-12 3TIE 0 JRNL AUTH Z.T.SHEN,T.T.NGUYEN,K.A.DANIELS,R.M.WELSH,L.J.STERN JRNL TITL DISPARATE EPITOPES MEDIATING PROTECTIVE HETEROLOGOUS JRNL TITL 2 IMMUNITY TO UNRELATED VIRUSES SHARE PEPTIDE-MHC STRUCTURAL JRNL TITL 3 FEATURES RECOGNIZED BY CROSS-REACTIVE T CELLS. JRNL REF J.IMMUNOL. V. 191 5139 2013 JRNL REFN ISSN 0022-1767 JRNL PMID 24127554 JRNL DOI 10.4049/JIMMUNOL.1300852 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 47665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5147 - 4.8455 0.99 4597 254 0.1706 0.1863 REMARK 3 2 4.8455 - 3.8468 1.00 4543 251 0.1344 0.1579 REMARK 3 3 3.8468 - 3.3607 1.00 4554 254 0.1832 0.2068 REMARK 3 4 3.3607 - 3.0535 1.00 4514 243 0.2006 0.2380 REMARK 3 5 3.0535 - 2.8347 1.00 4523 248 0.1887 0.2601 REMARK 3 6 2.8347 - 2.6676 1.00 4508 237 0.2034 0.2563 REMARK 3 7 2.6676 - 2.5340 1.00 4532 219 0.2135 0.2928 REMARK 3 8 2.5340 - 2.4237 0.99 4518 228 0.2094 0.2688 REMARK 3 9 2.4237 - 2.3304 0.99 4471 254 0.2164 0.2766 REMARK 3 10 2.3304 - 2.2500 0.99 4489 228 0.2250 0.2884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 26.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.84480 REMARK 3 B22 (A**2) : 10.83420 REMARK 3 B33 (A**2) : -5.98940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.84330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6507 REMARK 3 ANGLE : 1.178 8829 REMARK 3 CHIRALITY : 0.082 909 REMARK 3 PLANARITY : 0.004 1152 REMARK 3 DIHEDRAL : 13.114 2415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:180) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5494 -12.8560 31.0080 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0727 REMARK 3 T33: 0.1455 T12: 0.0020 REMARK 3 T13: 0.0208 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.6684 L22: 0.8476 REMARK 3 L33: 0.8826 L12: -0.0768 REMARK 3 L13: -0.1325 L23: 0.1657 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.0173 S13: 0.0784 REMARK 3 S21: -0.0305 S22: 0.1474 S23: -0.2435 REMARK 3 S31: 0.0492 S32: 0.0863 S33: -0.0642 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 181:277) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5344 -22.1585 24.2121 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.4047 REMARK 3 T33: 0.1522 T12: 0.0500 REMARK 3 T13: -0.0611 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 0.8778 L22: 1.5892 REMARK 3 L33: 1.6080 L12: 0.5667 REMARK 3 L13: 0.1052 L23: 1.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.2637 S13: 0.1653 REMARK 3 S21: -0.1731 S22: -0.4524 S23: 0.3266 REMARK 3 S31: 0.0584 S32: -0.6813 S33: 0.2862 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -7.6760 -16.8387 44.0457 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0349 REMARK 3 T33: 0.0505 T12: -0.0122 REMARK 3 T13: -0.0027 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6800 L22: 0.2394 REMARK 3 L33: 0.3297 L12: -0.2940 REMARK 3 L13: -0.4754 L23: 0.1965 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0202 S13: 0.0894 REMARK 3 S21: 0.0228 S22: 0.0226 S23: 0.0733 REMARK 3 S31: -0.0138 S32: -0.0066 S33: -0.0339 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 23.2940 -9.9720 31.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.2110 REMARK 3 T33: 0.2767 T12: 0.0023 REMARK 3 T13: 0.0420 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.2399 L22: 0.2534 REMARK 3 L33: 0.2242 L12: 0.1943 REMARK 3 L13: -0.0001 L23: -0.1242 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.1918 S13: 0.0952 REMARK 3 S21: 0.0388 S22: -0.0449 S23: -0.1583 REMARK 3 S31: 0.0302 S32: 0.1570 S33: -0.0207 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 1:180) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5533 -15.5745 -8.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.1157 REMARK 3 T33: 0.0745 T12: 0.0189 REMARK 3 T13: -0.0011 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.5609 L22: 0.7364 REMARK 3 L33: 0.9432 L12: -0.1491 REMARK 3 L13: -0.1461 L23: 0.0810 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.1767 S13: -0.0294 REMARK 3 S21: -0.0039 S22: 0.0239 S23: 0.0788 REMARK 3 S31: -0.0245 S32: -0.1187 S33: -0.0121 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 181:277) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5809 -24.7388 -0.2453 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.2694 REMARK 3 T33: 0.0926 T12: -0.0114 REMARK 3 T13: -0.0531 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 1.0364 L22: 0.7890 REMARK 3 L33: 1.3895 L12: -0.1768 REMARK 3 L13: -0.1227 L23: -0.6398 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.2473 S13: 0.1728 REMARK 3 S21: 0.0523 S22: -0.2290 S23: -0.1556 REMARK 3 S31: 0.1318 S32: 0.4963 S33: 0.1851 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' REMARK 3 ORIGIN FOR THE GROUP (A): 16.4987 -22.2608 -20.3453 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1138 REMARK 3 T33: 0.0779 T12: 0.0614 REMARK 3 T13: 0.0045 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.6579 L22: 1.1634 REMARK 3 L33: 0.2900 L12: -0.1664 REMARK 3 L13: 0.2132 L23: -0.2410 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: 0.1571 S13: 0.0488 REMARK 3 S21: -0.1006 S22: -0.1321 S23: -0.1295 REMARK 3 S31: 0.0572 S32: 0.0900 S33: -0.0984 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): -14.5490 -12.7370 -9.7589 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.2521 REMARK 3 T33: 0.2043 T12: 0.0742 REMARK 3 T13: 0.0389 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2624 L22: 0.0679 REMARK 3 L33: 0.5899 L12: 0.1310 REMARK 3 L13: 0.3637 L23: 0.2070 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.0429 S13: 0.0708 REMARK 3 S21: -0.0068 S22: 0.1464 S23: -0.0072 REMARK 3 S31: 0.0336 S32: -0.2068 S33: -0.1922 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 4 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND ((RESSEQ 1:160)) REMARK 3 SELECTION : CHAIN 'D' AND ((RESSEQ 1:160)) REMARK 3 ATOM PAIRS NUMBER : 1298 REMARK 3 RMSD : 0.043 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND ((RESSEQ 230:277)) REMARK 3 SELECTION : CHAIN 'D' AND ((RESSEQ 230:277)) REMARK 3 ATOM PAIRS NUMBER : 388 REMARK 3 RMSD : 0.244 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'B' REMARK 3 SELECTION : CHAIN 'E' REMARK 3 ATOM PAIRS NUMBER : 855 REMARK 3 RMSD : 2.553 REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'C' REMARK 3 SELECTION : CHAIN 'F' REMARK 3 ATOM PAIRS NUMBER : 61 REMARK 3 RMSD : 0.036 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 : STATISTICS AT THE VERY BEGINNING WHEN NOTHING IS DONE YET REMARK 3 : 0.3125 0.3272 5.644575E+00 5.741753E+00 REMARK 3 : 0.000 0.000 0.000 0.000 0.000 0.000 0.000 REMARK 3 0.000 REMARK 3 : 32.545 0.7388 0.8882 24356.079 REMARK 3 : 1.174 0.009 0.082 13.097 0.004 4.121 9.0416E-02 REMARK 3 : 12.018 0.084 0.439 84.894 0.024 2.029 5.7777E-02 REMARK 3 : 135.06 10.02 35.57 135.06 11.04 35.90 58.45 10.02 REMARK 3 30.53 REMARK 3 : 0.000 0.000 0.000 REMARK 4 REMARK 4 3TIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.089 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : INSERTION DEVICE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8K, CACODYLATE, MAGNESIUM ACETATE, REMARK 280 DTT, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.35500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -6 REMARK 465 GLN A -5 REMARK 465 GLU A -4 REMARK 465 GLU A -3 REMARK 465 PHE A -2 REMARK 465 LYS A -1 REMARK 465 MET A 0 REMARK 465 ILE D -6 REMARK 465 GLN D -5 REMARK 465 GLU D -4 REMARK 465 GLU D -3 REMARK 465 PHE D -2 REMARK 465 LYS D -1 REMARK 465 MET D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 342 O HOH D 390 2.03 REMARK 500 O GLY D 1 O HOH D 370 2.05 REMARK 500 NH2 ARG D 202 O HOH D 347 2.05 REMARK 500 O HOH D 344 O HOH E 112 2.06 REMARK 500 O HOH B 122 O HOH B 174 2.06 REMARK 500 O HOH E 133 O HOH E 134 2.08 REMARK 500 NE ARG D 108 O HOH D 362 2.09 REMARK 500 NE ARG A 6 O HOH A 355 2.10 REMARK 500 CG ARG D 108 O HOH D 362 2.10 REMARK 500 O HOH D 362 O HOH D 368 2.12 REMARK 500 O HOH A 320 O HOH B 152 2.12 REMARK 500 O HOH B 117 O HOH B 167 2.15 REMARK 500 O HOH D 400 O HOH D 422 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 220 -125.10 58.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TID RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LCMV DERIVED PEPTIDE GP34 IN COMPLEX WITH REMARK 900 THE MURINE MHC CLASS I H-2 KB REMARK 900 RELATED ID: 1FG2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LCMV PEPTIDIC EPITOPE GP33 IN COMPLEX WITH REMARK 900 THE MURINE CLASS I MHC MOLECULE H-2DB REMARK 900 RELATED ID: 1S7R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY REMARK 900 COMPLEX H-2KB IN COMPLEX WITH LCMV-DERIVED GP33 INDEX PEPTIDE DBREF 3TIE A 1 276 UNP P01901 HA1B_MOUSE 22 297 DBREF 3TIE B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3TIE D 1 276 UNP P01901 HA1B_MOUSE 22 297 DBREF 3TIE E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3TIE C 2 9 PDB 3TIE 3TIE 2 9 DBREF 3TIE F 2 9 PDB 3TIE 3TIE 2 9 SEQADV 3TIE ILE A -6 UNP P01901 EXPRESSION TAG SEQADV 3TIE GLN A -5 UNP P01901 EXPRESSION TAG SEQADV 3TIE GLU A -4 UNP P01901 EXPRESSION TAG SEQADV 3TIE GLU A -3 UNP P01901 EXPRESSION TAG SEQADV 3TIE PHE A -2 UNP P01901 EXPRESSION TAG SEQADV 3TIE LYS A -1 UNP P01901 EXPRESSION TAG SEQADV 3TIE MET A 0 UNP P01901 EXPRESSION TAG SEQADV 3TIE ARG A 121 UNP P01901 CYS 142 CONFLICT SEQADV 3TIE CYS A 277 UNP P01901 EXPRESSION TAG SEQADV 3TIE ILE D -6 UNP P01901 EXPRESSION TAG SEQADV 3TIE GLN D -5 UNP P01901 EXPRESSION TAG SEQADV 3TIE GLU D -4 UNP P01901 EXPRESSION TAG SEQADV 3TIE GLU D -3 UNP P01901 EXPRESSION TAG SEQADV 3TIE PHE D -2 UNP P01901 EXPRESSION TAG SEQADV 3TIE LYS D -1 UNP P01901 EXPRESSION TAG SEQADV 3TIE MET D 0 UNP P01901 EXPRESSION TAG SEQADV 3TIE ARG D 121 UNP P01901 CYS 142 CONFLICT SEQADV 3TIE CYS D 277 UNP P01901 EXPRESSION TAG SEQRES 1 A 284 ILE GLN GLU GLU PHE LYS MET GLY PRO HIS SER LEU ARG SEQRES 2 A 284 TYR PHE VAL THR ALA VAL SER ARG PRO GLY LEU GLY GLU SEQRES 3 A 284 PRO ARG TYR MET GLU VAL GLY TYR VAL ASP ASP THR GLU SEQRES 4 A 284 PHE VAL ARG PHE ASP SER ASP ALA GLU ASN PRO ARG TYR SEQRES 5 A 284 GLU PRO ARG ALA ARG TRP MET GLU GLN GLU GLY PRO GLU SEQRES 6 A 284 TYR TRP GLU ARG GLU THR GLN LYS ALA LYS GLY ASN GLU SEQRES 7 A 284 GLN SER PHE ARG VAL ASP LEU ARG THR LEU LEU GLY TYR SEQRES 8 A 284 TYR ASN GLN SER LYS GLY GLY SER HIS THR ILE GLN VAL SEQRES 9 A 284 ILE SER GLY CYS GLU VAL GLY SER ASP GLY ARG LEU LEU SEQRES 10 A 284 ARG GLY TYR GLN GLN TYR ALA TYR ASP GLY ARG ASP TYR SEQRES 11 A 284 ILE ALA LEU ASN GLU ASP LEU LYS THR TRP THR ALA ALA SEQRES 12 A 284 ASP MET ALA ALA LEU ILE THR LYS HIS LYS TRP GLU GLN SEQRES 13 A 284 ALA GLY GLU ALA GLU ARG LEU ARG ALA TYR LEU GLU GLY SEQRES 14 A 284 THR CYS VAL GLU TRP LEU ARG ARG TYR LEU LYS ASN GLY SEQRES 15 A 284 ASN ALA THR LEU LEU ARG THR ASP SER PRO LYS ALA HIS SEQRES 16 A 284 VAL THR HIS HIS SER ARG PRO GLU ASP LYS VAL THR LEU SEQRES 17 A 284 ARG CYS TRP ALA LEU GLY PHE TYR PRO ALA ASP ILE THR SEQRES 18 A 284 LEU THR TRP GLN LEU ASN GLY GLU GLU LEU ILE GLN ASP SEQRES 19 A 284 MET GLU LEU VAL GLU THR ARG PRO ALA GLY ASP GLY THR SEQRES 20 A 284 PHE GLN LYS TRP ALA SER VAL VAL VAL PRO LEU GLY LYS SEQRES 21 A 284 GLU GLN TYR TYR THR CYS HIS VAL TYR HIS GLN GLY LEU SEQRES 22 A 284 PRO GLU PRO LEU THR LEU ARG TRP GLU PRO CYS SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 D 284 ILE GLN GLU GLU PHE LYS MET GLY PRO HIS SER LEU ARG SEQRES 2 D 284 TYR PHE VAL THR ALA VAL SER ARG PRO GLY LEU GLY GLU SEQRES 3 D 284 PRO ARG TYR MET GLU VAL GLY TYR VAL ASP ASP THR GLU SEQRES 4 D 284 PHE VAL ARG PHE ASP SER ASP ALA GLU ASN PRO ARG TYR SEQRES 5 D 284 GLU PRO ARG ALA ARG TRP MET GLU GLN GLU GLY PRO GLU SEQRES 6 D 284 TYR TRP GLU ARG GLU THR GLN LYS ALA LYS GLY ASN GLU SEQRES 7 D 284 GLN SER PHE ARG VAL ASP LEU ARG THR LEU LEU GLY TYR SEQRES 8 D 284 TYR ASN GLN SER LYS GLY GLY SER HIS THR ILE GLN VAL SEQRES 9 D 284 ILE SER GLY CYS GLU VAL GLY SER ASP GLY ARG LEU LEU SEQRES 10 D 284 ARG GLY TYR GLN GLN TYR ALA TYR ASP GLY ARG ASP TYR SEQRES 11 D 284 ILE ALA LEU ASN GLU ASP LEU LYS THR TRP THR ALA ALA SEQRES 12 D 284 ASP MET ALA ALA LEU ILE THR LYS HIS LYS TRP GLU GLN SEQRES 13 D 284 ALA GLY GLU ALA GLU ARG LEU ARG ALA TYR LEU GLU GLY SEQRES 14 D 284 THR CYS VAL GLU TRP LEU ARG ARG TYR LEU LYS ASN GLY SEQRES 15 D 284 ASN ALA THR LEU LEU ARG THR ASP SER PRO LYS ALA HIS SEQRES 16 D 284 VAL THR HIS HIS SER ARG PRO GLU ASP LYS VAL THR LEU SEQRES 17 D 284 ARG CYS TRP ALA LEU GLY PHE TYR PRO ALA ASP ILE THR SEQRES 18 D 284 LEU THR TRP GLN LEU ASN GLY GLU GLU LEU ILE GLN ASP SEQRES 19 D 284 MET GLU LEU VAL GLU THR ARG PRO ALA GLY ASP GLY THR SEQRES 20 D 284 PHE GLN LYS TRP ALA SER VAL VAL VAL PRO LEU GLY LYS SEQRES 21 D 284 GLU GLN TYR TYR THR CYS HIS VAL TYR HIS GLN GLY LEU SEQRES 22 D 284 PRO GLU PRO LEU THR LEU ARG TRP GLU PRO CYS SEQRES 1 E 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 E 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 E 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 E 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 E 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 E 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 E 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 8 ALA ILE VAL ASN TYR ALA ASN LEU SEQRES 1 F 8 ALA ILE VAL ASN TYR ALA ASN LEU FORMUL 7 HOH *412(H2 O) HELIX 1 1 ALA A 49 GLU A 55 5 7 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 ASN A 176 1 15 HELIX 6 6 LYS A 253 GLN A 255 5 3 HELIX 7 7 ALA D 49 GLU D 55 5 7 HELIX 8 8 GLY D 56 TYR D 85 1 30 HELIX 9 9 ASP D 137 ALA D 150 1 14 HELIX 10 10 GLY D 151 GLY D 162 1 12 HELIX 11 11 GLY D 162 LEU D 180 1 19 HELIX 12 12 LYS D 253 GLN D 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLU A 24 O PHE A 36 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 VAL A 103 -1 O SER A 99 N TYR A 7 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 A 8 ARG A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 ARG A 194 0 SHEET 2 B 4 LYS A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 C 4 LYS A 186 ARG A 194 0 SHEET 2 C 4 LYS A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 3 THR A 214 LEU A 219 0 SHEET 2 D 3 TYR A 257 TYR A 262 -1 O THR A 258 N GLN A 218 SHEET 3 D 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 8 GLU D 46 PRO D 47 0 SHEET 2 H 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 H 8 ARG D 21 VAL D 28 -1 N GLU D 24 O PHE D 36 SHEET 4 H 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 H 8 THR D 94 VAL D 103 -1 O SER D 99 N TYR D 7 SHEET 6 H 8 LEU D 109 TYR D 118 -1 O LEU D 110 N GLU D 102 SHEET 7 H 8 ARG D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 H 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 I 4 LYS D 186 ARG D 194 0 SHEET 2 I 4 LYS D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 I 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 I 4 GLU D 229 LEU D 230 -1 N GLU D 229 O SER D 246 SHEET 1 J 4 LYS D 186 ARG D 194 0 SHEET 2 J 4 LYS D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 J 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 J 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 K 4 GLU D 223 LEU D 224 0 SHEET 2 K 4 THR D 214 LEU D 219 -1 N LEU D 219 O GLU D 223 SHEET 3 K 4 TYR D 257 TYR D 262 -1 O THR D 258 N GLN D 218 SHEET 4 K 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 L 4 LYS E 6 SER E 11 0 SHEET 2 L 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 L 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 L 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 M 4 LYS E 6 SER E 11 0 SHEET 2 M 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 M 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 M 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 N 4 GLU E 44 ARG E 45 0 SHEET 2 N 4 GLU E 36 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 N 4 TYR E 78 ASN E 83 -1 O ALA E 79 N LEU E 40 SHEET 4 N 4 LYS E 91 LYS E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.09 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.05 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.09 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.04 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.04 CISPEP 1 GLY A 1 PRO A 2 0 -0.69 CISPEP 2 TYR A 209 PRO A 210 0 0.94 CISPEP 3 HIS B 31 PRO B 32 0 2.48 CISPEP 4 GLY D 1 PRO D 2 0 1.57 CISPEP 5 TYR D 209 PRO D 210 0 -0.44 CISPEP 6 HIS E 31 PRO E 32 0 -0.14 CRYST1 69.264 84.710 87.895 90.00 98.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014438 0.000000 0.002060 0.00000 SCALE2 0.000000 0.011805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011492 0.00000