HEADER PROTEIN TRANSPORT/LIGASE 22-AUG-11 3TIW TITLE CRYSTAL STRUCTURE OF P97N IN COMPLEX WITH THE C-TERMINUS OF GP78 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-187; COMPND 5 SYNONYM: TER ATPASE, 15S MG(2+)-ATPASE P97 SUBUNIT, VALOSIN- COMPND 6 CONTAINING PROTEIN, VCP; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE AMFR; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 622-640; COMPND 12 SYNONYM: AUTOCRINE MOTILITY FACTOR RECEPTOR, ISOFORM 2, AMF RECEPTOR, COMPND 13 ISOFORM 2, RING FINGER PROTEIN 45, GP78; COMPND 14 EC: 6.3.2.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX_HTA; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS BETA-BARREL ALPHA-HELIX, TRANSPORT PROTEIN ATPASE UBIQUITIN LIGASE, KEYWDS 2 UBIQUITIN, PHOSPHORYLATION, CYTOPLASM ENDOPLASMIC RETICULUM, PROTEIN KEYWDS 3 TRANSPORT-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.HAENZELMANN,H.SCHINDELIN REVDAT 4 13-SEP-23 3TIW 1 REMARK REVDAT 3 16-NOV-11 3TIW 1 JRNL REVDAT 2 02-NOV-11 3TIW 1 JRNL REVDAT 1 14-SEP-11 3TIW 0 JRNL AUTH P.HANZELMANN,H.SCHINDELIN JRNL TITL THE STRUCTURAL AND FUNCTIONAL BASIS OF THE JRNL TITL 2 P97/VALOSIN-CONTAINING PROTEIN (VCP)-INTERACTING MOTIF JRNL TITL 3 (VIM): MUTUALLY EXCLUSIVE BINDING OF COFACTORS TO THE JRNL TITL 4 N-TERMINAL DOMAIN OF P97. JRNL REF J.BIOL.CHEM. V. 286 38679 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21914798 JRNL DOI 10.1074/JBC.M111.274506 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.2_432 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.0777 - 4.2300 0.95 2781 159 0.0980 0.1293 REMARK 3 2 4.2300 - 3.3608 0.94 2756 174 0.0932 0.1337 REMARK 3 3 3.3608 - 2.9369 0.95 2755 159 0.1211 0.1548 REMARK 3 4 2.9369 - 2.6688 0.95 2791 156 0.1501 0.1851 REMARK 3 5 2.6688 - 2.4778 0.95 2789 145 0.1663 0.1676 REMARK 3 6 2.4778 - 2.3318 0.95 2748 139 0.1735 0.2103 REMARK 3 7 2.3318 - 2.2152 0.95 2824 148 0.1765 0.1919 REMARK 3 8 2.2152 - 2.1188 0.96 2806 130 0.1802 0.1980 REMARK 3 9 2.1188 - 2.0373 0.95 2789 138 0.1913 0.2022 REMARK 3 10 2.0373 - 1.9670 0.96 2807 108 0.2235 0.2303 REMARK 3 11 1.9670 - 1.9055 0.95 2784 151 0.2344 0.2703 REMARK 3 12 1.9055 - 1.8511 0.95 2790 137 0.2795 0.2815 REMARK 3 13 1.8511 - 1.8024 0.95 2763 159 0.3334 0.3528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.76100 REMARK 3 B22 (A**2) : -1.76100 REMARK 3 B33 (A**2) : 3.52190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.2920 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2948 REMARK 3 ANGLE : 1.057 3984 REMARK 3 CHIRALITY : 0.067 459 REMARK 3 PLANARITY : 0.004 521 REMARK 3 DIHEDRAL : 13.740 1182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 22:108) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7204 -16.7094 -7.7164 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.1006 REMARK 3 T33: 0.1232 T12: 0.0018 REMARK 3 T13: 0.0018 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.9917 L22: 1.2205 REMARK 3 L33: 0.1403 L12: -0.8794 REMARK 3 L13: 0.0335 L23: -0.0978 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.0790 S13: 0.0793 REMARK 3 S21: 0.0106 S22: -0.0211 S23: -0.0920 REMARK 3 S31: -0.0213 S32: 0.0200 S33: -0.0141 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 109:186) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9038 2.7710 -4.7897 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1071 REMARK 3 T33: 0.4017 T12: -0.0149 REMARK 3 T13: 0.0600 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 1.5487 L22: 0.5546 REMARK 3 L33: 0.6393 L12: -0.5028 REMARK 3 L13: 0.0391 L23: -0.2111 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: -0.1554 S13: 0.8257 REMARK 3 S21: -0.0337 S22: -0.0438 S23: -0.0672 REMARK 3 S31: -0.1761 S32: 0.0648 S33: -0.0294 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 23:108) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6543 -15.4334 30.0395 REMARK 3 T TENSOR REMARK 3 T11: 0.0815 T22: 0.1315 REMARK 3 T33: 0.2820 T12: 0.0298 REMARK 3 T13: 0.0322 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 1.9833 L22: 1.6308 REMARK 3 L33: 0.7007 L12: -1.6574 REMARK 3 L13: 0.0141 L23: 0.5184 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: -0.1833 S13: -0.5307 REMARK 3 S21: 0.0477 S22: 0.0427 S23: 0.2802 REMARK 3 S31: 0.1458 S32: 0.0009 S33: -0.0121 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 109:187) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8273 3.9390 31.1546 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.1388 REMARK 3 T33: 0.1755 T12: 0.0063 REMARK 3 T13: 0.0132 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.1483 L22: 1.5288 REMARK 3 L33: 0.6165 L12: -0.8702 REMARK 3 L13: -0.0889 L23: 0.1237 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.1490 S13: 0.0230 REMARK 3 S21: -0.1537 S22: -0.0550 S23: 0.0559 REMARK 3 S31: 0.0554 S32: 0.0814 S33: 0.0221 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 622:639) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0534 -7.6333 -20.7375 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.2182 REMARK 3 T33: 0.1731 T12: 0.0438 REMARK 3 T13: 0.0223 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 0.5507 L22: 0.2479 REMARK 3 L33: 0.3673 L12: -0.1271 REMARK 3 L13: 0.4488 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: 0.2308 S12: 0.2866 S13: 0.2795 REMARK 3 S21: -0.0251 S22: -0.2867 S23: 0.0611 REMARK 3 S31: 0.0561 S32: 0.0996 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN D AND RESID 622:640) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3764 -8.4604 16.9439 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.2103 REMARK 3 T33: 0.2655 T12: 0.0779 REMARK 3 T13: -0.0335 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.3744 L22: 0.9231 REMARK 3 L33: 0.3447 L12: 0.0460 REMARK 3 L13: 0.5714 L23: -0.2362 REMARK 3 S TENSOR REMARK 3 S11: 0.3506 S12: 0.5646 S13: -0.2228 REMARK 3 S21: -0.1648 S22: -0.2249 S23: 0.3525 REMARK 3 S31: 0.1349 S32: -0.0631 S33: -0.1288 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 23:121 OR RESSEQ REMARK 3 128:185 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 23:121 OR RESSEQ REMARK 3 128:185 ) REMARK 3 ATOM PAIRS NUMBER : 1254 REMARK 3 RMSD : 0.906 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESSEQ 622:639 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 622:639 ) REMARK 3 ATOM PAIRS NUMBER : 140 REMARK 3 RMSD : 1.042 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.802 REMARK 200 RESOLUTION RANGE LOW (A) : 60.829 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : 0.49200 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1S3S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% (W/V) POLYETHYLENE GLYCOL 3000, REMARK 280 0.2 M NACL AND 100 MM TRIS PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.88000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 ILE A 16 REMARK 465 LEU A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LYS A 20 REMARK 465 SER A 21 REMARK 465 THR A 122 REMARK 465 VAL A 123 REMARK 465 GLU A 124 REMARK 465 GLY A 125 REMARK 465 ILE A 126 REMARK 465 GLU A 187 REMARK 465 GLN C 640 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 THR B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 ASP B 10 REMARK 465 ASP B 11 REMARK 465 LEU B 12 REMARK 465 SER B 13 REMARK 465 THR B 14 REMARK 465 ALA B 15 REMARK 465 ILE B 16 REMARK 465 LEU B 17 REMARK 465 LYS B 18 REMARK 465 GLN B 19 REMARK 465 LYS B 20 REMARK 465 SER B 21 REMARK 465 ARG B 22 REMARK 465 VAL B 123 REMARK 465 GLU B 124 REMARK 465 GLY B 125 REMARK 465 ILE B 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 THR B 127 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH A 327 1.86 REMARK 500 O HOH B 232 O HOH B 308 2.08 REMARK 500 OE2 GLU A 34 O HOH A 304 2.10 REMARK 500 O HOH A 215 O HOH A 286 2.10 REMARK 500 O HOH A 260 O HOH A 262 2.13 REMARK 500 O HOH B 250 O HOH B 315 2.14 REMARK 500 O HOH A 233 O HOH A 322 2.14 REMARK 500 O HOH B 296 O HOH D 88 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 34 50.88 -96.93 REMARK 500 MET A 158 -52.96 67.55 REMARK 500 CYS A 184 79.02 -115.97 REMARK 500 GLU A 185 159.92 171.80 REMARK 500 GLN C 638 39.16 -86.34 REMARK 500 ASN B 24 101.31 160.05 REMARK 500 LEU B 140 108.74 -53.30 REMARK 500 MET B 158 10.77 -141.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QQ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P97 N-TERMINAL DOMAIN REMARK 900 RELATED ID: 3QQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P97N IN COMPLEX WITH FAF1-UBX DBREF 3TIW A 1 187 UNP P55072 TERA_HUMAN 1 187 DBREF 3TIW C 622 640 UNP Q9UKV5 AMFR2_HUMAN 622 640 DBREF 3TIW B 1 187 UNP P55072 TERA_HUMAN 1 187 DBREF 3TIW D 622 640 UNP Q9UKV5 AMFR2_HUMAN 622 640 SEQRES 1 A 187 MET ALA SER GLY SER ASP THR LYS SER ASP ASP LEU SER SEQRES 2 A 187 THR ALA ILE LEU LYS GLN LYS SER ARG PRO ASN ARG LEU SEQRES 3 A 187 ILE VAL ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SEQRES 4 A 187 SER LEU SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE SEQRES 5 A 187 ARG GLY ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG SEQRES 6 A 187 GLU ALA VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER SEQRES 7 A 187 ASP GLU LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN SEQRES 8 A 187 LEU ARG VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO SEQRES 9 A 187 CYS PRO ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU SEQRES 10 A 187 PRO ILE ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU SEQRES 11 A 187 PHE GLU VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR SEQRES 12 A 187 ARG PRO ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY SEQRES 13 A 187 GLY MET ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP SEQRES 14 A 187 PRO SER PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE SEQRES 15 A 187 HIS CYS GLU GLY GLU SEQRES 1 C 19 VAL THR LEU ARG ARG ARG MET LEU ALA ALA ALA ALA GLU SEQRES 2 C 19 ARG ARG LEU GLN LYS GLN SEQRES 1 B 187 MET ALA SER GLY SER ASP THR LYS SER ASP ASP LEU SER SEQRES 2 B 187 THR ALA ILE LEU LYS GLN LYS SER ARG PRO ASN ARG LEU SEQRES 3 B 187 ILE VAL ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SEQRES 4 B 187 SER LEU SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE SEQRES 5 B 187 ARG GLY ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG SEQRES 6 B 187 GLU ALA VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER SEQRES 7 B 187 ASP GLU LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN SEQRES 8 B 187 LEU ARG VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO SEQRES 9 B 187 CYS PRO ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU SEQRES 10 B 187 PRO ILE ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU SEQRES 11 B 187 PHE GLU VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR SEQRES 12 B 187 ARG PRO ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY SEQRES 13 B 187 GLY MET ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP SEQRES 14 B 187 PRO SER PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE SEQRES 15 B 187 HIS CYS GLU GLY GLU SEQRES 1 D 19 VAL THR LEU ARG ARG ARG MET LEU ALA ALA ALA ALA GLU SEQRES 2 D 19 ARG ARG LEU GLN LYS GLN HET CL A 188 1 HET CL C 2 1 HET CL B 188 1 HET CL D 4 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 4(CL 1-) FORMUL 9 HOH *381(H2 O) HELIX 1 1 SER A 42 GLN A 50 1 9 HELIX 2 2 ASN A 85 LEU A 92 1 8 HELIX 3 3 ASN A 129 TYR A 134 1 6 HELIX 4 4 TYR A 134 LEU A 140 1 7 HELIX 5 5 LEU C 624 GLN C 638 1 15 HELIX 6 6 SER B 42 GLN B 50 1 9 HELIX 7 7 LYS B 62 ARG B 64 5 3 HELIX 8 8 ASN B 85 LEU B 92 1 8 HELIX 9 9 ASN B 129 TYR B 134 1 6 HELIX 10 10 TYR B 134 LEU B 140 1 7 HELIX 11 11 LEU D 624 GLN D 638 1 15 SHEET 1 A 7 ARG A 25 GLU A 30 0 SHEET 2 A 7 LYS A 81 MET A 84 1 O ILE A 82 N ASP A 29 SHEET 3 A 7 VAL A 38 LEU A 41 -1 N SER A 40 O ARG A 83 SHEET 4 A 7 GLU A 66 SER A 73 1 O ILE A 70 N VAL A 39 SHEET 5 A 7 THR A 56 LYS A 60 -1 N LEU A 59 O ALA A 67 SHEET 6 A 7 VAL A 99 PRO A 104 -1 O GLN A 103 N LEU A 58 SHEET 7 A 7 ARG A 25 GLU A 30 -1 N LEU A 26 O ILE A 100 SHEET 1 B 3 LYS A 109 TYR A 110 0 SHEET 2 B 3 TYR A 173 ILE A 175 1 O ILE A 175 N LYS A 109 SHEET 3 B 3 PRO A 145 ARG A 147 -1 N ILE A 146 O CYS A 174 SHEET 1 C 4 ILE A 151 ARG A 155 0 SHEET 2 C 4 ALA A 160 ASP A 169 -1 O VAL A 161 N VAL A 154 SHEET 3 C 4 ARG A 113 PRO A 118 -1 N LEU A 117 O LYS A 164 SHEET 4 C 4 VAL A 181 HIS A 183 1 O VAL A 181 N ILE A 114 SHEET 1 D 7 ARG B 25 ASP B 29 0 SHEET 2 D 7 LYS B 81 ARG B 83 1 O ILE B 82 N ASP B 29 SHEET 3 D 7 VAL B 38 LEU B 41 -1 N SER B 40 O ARG B 83 SHEET 4 D 7 GLU B 66 SER B 73 1 O ILE B 70 N VAL B 39 SHEET 5 D 7 THR B 56 LYS B 60 -1 N LEU B 59 O ALA B 67 SHEET 6 D 7 VAL B 99 PRO B 104 -1 O GLN B 103 N LEU B 58 SHEET 7 D 7 ARG B 25 ASP B 29 -1 N LEU B 26 O ILE B 100 SHEET 1 E 4 ILE B 151 GLY B 156 0 SHEET 2 E 4 ARG B 159 ASP B 169 -1 O VAL B 161 N VAL B 154 SHEET 3 E 4 ARG B 113 PRO B 118 -1 N LEU B 117 O LYS B 164 SHEET 4 E 4 VAL B 181 CYS B 184 1 O HIS B 183 N ILE B 114 SHEET 1 F 2 ARG B 144 ARG B 147 0 SHEET 2 F 2 TYR B 173 VAL B 176 -1 O VAL B 176 N ARG B 144 CISPEP 1 ASP A 169 PRO A 170 0 5.86 CISPEP 2 SER A 171 PRO A 172 0 -1.63 CISPEP 3 ASP B 169 PRO B 170 0 5.18 CISPEP 4 SER B 171 PRO B 172 0 0.88 SITE 1 AC1 4 ARG A 53 HOH A 318 ARG C 626 ARG C 627 SITE 1 AC2 5 HOH C 100 HOH C 296 THR C 623 LEU C 624 SITE 2 AC2 5 ARG C 627 SITE 1 AC3 3 ARG B 53 ARG D 626 ARG D 627 SITE 1 AC4 3 HOH D 356 LEU D 624 ARG D 627 CRYST1 70.240 70.240 74.820 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014237 0.008220 0.000000 0.00000 SCALE2 0.000000 0.016439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013365 0.00000