HEADER RNA BINDING PROTEIN 23-AUG-11 3TJ0 TITLE CRYSTAL STRUCTURE OF INFLUENZA B VIRUS NUCLEOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA B VIRUS; SOURCE 3 ORGANISM_TAXID: 554810; SOURCE 4 STRAIN: B/MANAGUA/4577.01/2008; SOURCE 5 GENE: NP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA-BINDING, HOMO-OLIGOMERIZATION, TRANSCRIPTION REGULATION, NUCLEUS, KEYWDS 2 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.L.NG,H.ZHANG,J.LIU,S.W.N.AU,J.WANG,P.C.SHAW REVDAT 2 01-NOV-23 3TJ0 1 SEQADV REVDAT 1 20-JUN-12 3TJ0 0 JRNL AUTH A.K.L.NG,M.K.H.LAM,H.ZHANG,J.LIU,S.W.N.AU,P.K.S.CHAN,J.WANG, JRNL AUTH 2 P.C.SHAW JRNL TITL STRUCTURAL BASIS FOR RNA BINDING AND HOMO-OLIGOMER FORMATION JRNL TITL 2 BY INFLUENZA B VIRUS NUCLEOPROTEIN JRNL REF J.VIROL. V. 86 6758 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22496219 JRNL DOI 10.1128/JVI.00073-12 REMARK 2 REMARK 2 RESOLUTION. 3.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 19862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0597 - 6.1797 0.90 2743 138 0.2353 0.2354 REMARK 3 2 6.1797 - 4.9067 0.92 2670 142 0.2531 0.2912 REMARK 3 3 4.9067 - 4.2869 0.93 2687 131 0.1954 0.2750 REMARK 3 4 4.2869 - 3.8952 0.94 2689 147 0.2123 0.2709 REMARK 3 5 3.8952 - 3.6161 0.94 2701 158 0.2500 0.3169 REMARK 3 6 3.6161 - 3.4030 0.94 2684 153 0.3012 0.3542 REMARK 3 7 3.4030 - 3.2326 0.94 2665 154 0.3393 0.4013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.50 REMARK 3 SHRINKAGE RADIUS : 0.16 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 47.07 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.30300 REMARK 3 B22 (A**2) : 54.12030 REMARK 3 B33 (A**2) : -34.81730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7128 REMARK 3 ANGLE : 0.729 9563 REMARK 3 CHIRALITY : 0.048 1075 REMARK 3 PLANARITY : 0.002 1228 REMARK 3 DIHEDRAL : 11.943 2724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97941 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19883 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COOT REMARK 200 STARTING MODEL: 2Q06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM-POTASSIUM PHOSPHATE, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.47550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.67100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.04150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.47550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.67100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.04150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.47550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.67100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.04150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.47550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.67100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.04150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 53.47550 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -61.67100 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 99.04150 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -53.47550 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 61.67100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 99.04150 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 106.95100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 123.34200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 53.47550 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 61.67100 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 99.04150 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 53.47550 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 61.67100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 99.04150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 ASP A 5 REMARK 465 ILE A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 ASN A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 ILE A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 THR A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 THR A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 ILE A 32 REMARK 465 ILE A 33 REMARK 465 ARG A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 THR A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 PRO A 40 REMARK 465 PRO A 41 REMARK 465 SER A 42 REMARK 465 ASN A 43 REMARK 465 LYS A 44 REMARK 465 ARG A 45 REMARK 465 THR A 46 REMARK 465 ARG A 47 REMARK 465 ASN A 48 REMARK 465 PRO A 49 REMARK 465 SER A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 ALA A 54 REMARK 465 THR A 55 REMARK 465 THR A 56 REMARK 465 SER A 57 REMARK 465 SER A 58 REMARK 465 GLU A 59 REMARK 465 ASP A 60 REMARK 465 ASP A 61 REMARK 465 VAL A 62 REMARK 465 GLY A 63 REMARK 465 ARG A 64 REMARK 465 LYS A 65 REMARK 465 THR A 66 REMARK 465 GLN A 67 REMARK 465 LYS A 68 REMARK 465 LYS A 69 REMARK 465 GLN A 70 REMARK 465 THR A 71 REMARK 465 PRO A 72 REMARK 465 THR A 127 REMARK 465 GLU A 128 REMARK 465 PHE A 129 REMARK 465 GLN A 130 REMARK 465 LYS A 131 REMARK 465 LYS A 132 REMARK 465 LYS A 133 REMARK 465 ASN A 134 REMARK 465 ALA A 135 REMARK 465 ARG A 136 REMARK 465 ASP A 137 REMARK 465 VAL A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 GLY A 141 REMARK 465 LYS A 142 REMARK 465 GLU A 143 REMARK 465 GLU A 144 REMARK 465 ILE A 145 REMARK 465 ASP A 146 REMARK 465 THR A 551 REMARK 465 ALA A 552 REMARK 465 GLU A 553 REMARK 465 ASP A 554 REMARK 465 TYR A 555 REMARK 465 ASP A 556 REMARK 465 ASP A 557 REMARK 465 LEU A 558 REMARK 465 ASP A 559 REMARK 465 TYR A 560 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 MET B 4 REMARK 465 ASP B 5 REMARK 465 ILE B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 ILE B 9 REMARK 465 ASN B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 THR B 13 REMARK 465 ILE B 14 REMARK 465 ASP B 15 REMARK 465 LYS B 16 REMARK 465 THR B 17 REMARK 465 PRO B 18 REMARK 465 GLU B 19 REMARK 465 GLU B 20 REMARK 465 ILE B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 GLY B 24 REMARK 465 THR B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 465 THR B 28 REMARK 465 THR B 29 REMARK 465 ARG B 30 REMARK 465 PRO B 31 REMARK 465 ILE B 32 REMARK 465 ILE B 33 REMARK 465 ARG B 34 REMARK 465 PRO B 35 REMARK 465 ALA B 36 REMARK 465 THR B 37 REMARK 465 LEU B 38 REMARK 465 ALA B 39 REMARK 465 PRO B 40 REMARK 465 PRO B 41 REMARK 465 SER B 42 REMARK 465 ASN B 43 REMARK 465 LYS B 44 REMARK 465 ARG B 45 REMARK 465 THR B 46 REMARK 465 ARG B 47 REMARK 465 ASN B 48 REMARK 465 PRO B 49 REMARK 465 SER B 50 REMARK 465 PRO B 51 REMARK 465 GLU B 52 REMARK 465 ARG B 53 REMARK 465 ALA B 54 REMARK 465 THR B 55 REMARK 465 THR B 56 REMARK 465 SER B 57 REMARK 465 SER B 58 REMARK 465 GLU B 59 REMARK 465 ASP B 60 REMARK 465 ASP B 61 REMARK 465 VAL B 62 REMARK 465 GLY B 63 REMARK 465 ARG B 64 REMARK 465 LYS B 65 REMARK 465 THR B 66 REMARK 465 GLN B 67 REMARK 465 LYS B 68 REMARK 465 LYS B 69 REMARK 465 GLN B 70 REMARK 465 THR B 71 REMARK 465 LYS B 125 REMARK 465 LYS B 126 REMARK 465 THR B 127 REMARK 465 GLU B 128 REMARK 465 PHE B 129 REMARK 465 GLN B 130 REMARK 465 LYS B 131 REMARK 465 LYS B 132 REMARK 465 LYS B 133 REMARK 465 ASN B 134 REMARK 465 ALA B 135 REMARK 465 ARG B 136 REMARK 465 ASP B 137 REMARK 465 VAL B 138 REMARK 465 LYS B 139 REMARK 465 GLU B 140 REMARK 465 GLY B 141 REMARK 465 LYS B 142 REMARK 465 GLU B 143 REMARK 465 GLU B 144 REMARK 465 ILE B 145 REMARK 465 ASP B 146 REMARK 465 HIS B 147 REMARK 465 ALA B 552 REMARK 465 GLU B 553 REMARK 465 ASP B 554 REMARK 465 TYR B 555 REMARK 465 ASP B 556 REMARK 465 ASP B 557 REMARK 465 LEU B 558 REMARK 465 ASP B 559 REMARK 465 TYR B 560 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 551 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 100 -58.91 -120.37 REMARK 500 LYS A 125 -74.93 -112.18 REMARK 500 ARG A 159 -71.34 -76.79 REMARK 500 ASP A 160 -0.46 66.73 REMARK 500 ASP A 161 -143.77 57.45 REMARK 500 LYS A 162 -122.19 40.69 REMARK 500 ARG A 170 71.32 61.51 REMARK 500 LEU A 224 -2.65 76.92 REMARK 500 ILE A 271 -13.59 68.84 REMARK 500 LYS A 272 -63.99 -95.63 REMARK 500 LYS A 285 -18.29 78.89 REMARK 500 SER A 289 -62.31 -91.14 REMARK 500 GLU A 351 159.73 173.92 REMARK 500 ASP A 376 71.43 60.42 REMARK 500 CYS A 416 162.42 173.52 REMARK 500 ARG A 447 -132.21 36.81 REMARK 500 SER A 448 71.09 38.15 REMARK 500 SER A 459 -10.50 67.34 REMARK 500 ILE A 474 71.29 61.94 REMARK 500 ASN A 488 69.42 35.62 REMARK 500 ARG A 492 -7.02 62.08 REMARK 500 ASP A 493 -139.98 53.95 REMARK 500 ALA A 494 175.03 174.52 REMARK 500 LYS A 511 -134.77 42.15 REMARK 500 ASN A 529 -4.27 82.83 REMARK 500 ILE A 536 -78.08 -78.78 REMARK 500 GLN A 537 175.04 170.66 REMARK 500 THR B 73 18.99 58.40 REMARK 500 ASP B 101 159.64 176.39 REMARK 500 ILE B 169 -61.72 -120.91 REMARK 500 ARG B 170 71.52 61.14 REMARK 500 LEU B 224 -2.07 77.22 REMARK 500 LEU B 268 -60.04 -141.78 REMARK 500 ILE B 271 -13.91 70.30 REMARK 500 LYS B 285 -18.47 76.49 REMARK 500 SER B 289 -63.38 -91.04 REMARK 500 VAL B 323 -62.71 -96.32 REMARK 500 PHE B 347 -159.45 44.64 REMARK 500 ASN B 348 -82.82 -145.85 REMARK 500 GLU B 350 -7.19 87.78 REMARK 500 CYS B 416 171.17 174.41 REMARK 500 ASN B 451 -126.57 61.14 REMARK 500 ASP B 456 -13.24 70.28 REMARK 500 SER B 459 -8.34 64.91 REMARK 500 VAL B 467 -63.35 -121.83 REMARK 500 ARG B 472 149.00 -176.47 REMARK 500 PRO B 473 49.58 -83.38 REMARK 500 ILE B 474 73.28 40.01 REMARK 500 ARG B 492 -68.79 -131.33 REMARK 500 ASP B 493 -16.77 76.01 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 218 GLY A 219 -134.26 REMARK 500 MET A 487 ASN A 488 143.39 REMARK 500 PHE B 347 ASN B 348 124.79 REMARK 500 ASN B 348 VAL B 349 139.86 REMARK 500 GLY B 449 GLY B 450 -143.27 REMARK 500 ILE B 538 LYS B 539 141.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS THE NATURAL POLYMORPHISM OF THE PROTEIN. DBREF 3TJ0 A 1 560 UNP C4LQ26 C4LQ26_9INFB 1 560 DBREF 3TJ0 B 1 560 UNP C4LQ26 C4LQ26_9INFB 1 560 SEQADV 3TJ0 GLY A -1 UNP C4LQ26 EXPRESSION TAG SEQADV 3TJ0 SER A 0 UNP C4LQ26 EXPRESSION TAG SEQADV 3TJ0 LYS A 142 UNP C4LQ26 ARG 142 SEE REMARK 999 SEQADV 3TJ0 GLN A 537 UNP C4LQ26 PRO 537 SEE REMARK 999 SEQADV 3TJ0 GLY B -1 UNP C4LQ26 EXPRESSION TAG SEQADV 3TJ0 SER B 0 UNP C4LQ26 EXPRESSION TAG SEQADV 3TJ0 LYS B 142 UNP C4LQ26 ARG 142 SEE REMARK 999 SEQADV 3TJ0 GLN B 537 UNP C4LQ26 PRO 537 SEE REMARK 999 SEQRES 1 A 562 GLY SER MET SER ASN MET ASP ILE ASP GLY ILE ASN THR SEQRES 2 A 562 GLY THR ILE ASP LYS THR PRO GLU GLU ILE THR SER GLY SEQRES 3 A 562 THR SER GLY THR THR ARG PRO ILE ILE ARG PRO ALA THR SEQRES 4 A 562 LEU ALA PRO PRO SER ASN LYS ARG THR ARG ASN PRO SER SEQRES 5 A 562 PRO GLU ARG ALA THR THR SER SER GLU ASP ASP VAL GLY SEQRES 6 A 562 ARG LYS THR GLN LYS LYS GLN THR PRO THR GLU ILE LYS SEQRES 7 A 562 LYS SER VAL TYR ASN MET VAL VAL LYS LEU GLY GLU PHE SEQRES 8 A 562 TYR ASN GLN MET MET VAL LYS ALA GLY LEU ASN ASP ASP SEQRES 9 A 562 MET GLU ARG ASN LEU ILE GLN ASN ALA HIS ALA VAL GLU SEQRES 10 A 562 ARG ILE LEU LEU ALA ALA THR ASP ASP LYS LYS THR GLU SEQRES 11 A 562 PHE GLN LYS LYS LYS ASN ALA ARG ASP VAL LYS GLU GLY SEQRES 12 A 562 LYS GLU GLU ILE ASP HIS ASN LYS THR GLY GLY THR PHE SEQRES 13 A 562 TYR LYS MET VAL ARG ASP ASP LYS THR ILE TYR PHE SER SEQRES 14 A 562 PRO ILE ARG ILE THR PHE LEU LYS GLU GLU VAL LYS THR SEQRES 15 A 562 MET TYR LYS THR THR MET GLY SER ASP GLY PHE SER GLY SEQRES 16 A 562 LEU ASN HIS ILE MET ILE GLY HIS SER GLN MET ASN ASP SEQRES 17 A 562 VAL CYS PHE GLN ARG SER LYS ALA LEU LYS ARG VAL GLY SEQRES 18 A 562 LEU ASP PRO SER LEU ILE SER THR PHE ALA GLY SER THR SEQRES 19 A 562 ILE PRO ARG ARG SER GLY ALA THR GLY VAL ALA ILE LYS SEQRES 20 A 562 GLY GLY GLY THR LEU VAL ALA GLU ALA ILE ARG PHE ILE SEQRES 21 A 562 GLY ARG ALA MET ALA ASP ARG GLY LEU LEU ARG ASP ILE SEQRES 22 A 562 LYS ALA LYS THR ALA TYR GLU LYS ILE LEU LEU ASN LEU SEQRES 23 A 562 LYS ASN LYS CYS SER ALA PRO GLN GLN LYS ALA LEU VAL SEQRES 24 A 562 ASP GLN VAL ILE GLY SER ARG ASN PRO GLY ILE ALA ASP SEQRES 25 A 562 ILE GLU ASP LEU THR LEU LEU ALA ARG SER MET VAL VAL SEQRES 26 A 562 VAL ARG PRO SER VAL ALA SER LYS VAL VAL LEU PRO ILE SEQRES 27 A 562 SER ILE TYR ALA LYS ILE PRO GLN LEU GLY PHE ASN VAL SEQRES 28 A 562 GLU GLU TYR SER MET VAL GLY TYR GLU ALA MET ALA LEU SEQRES 29 A 562 TYR ASN MET ALA THR PRO VAL SER ILE LEU ARG MET GLY SEQRES 30 A 562 ASP ASP ALA LYS ASP LYS SER GLN LEU PHE PHE MET SER SEQRES 31 A 562 CYS PHE GLY ALA ALA TYR GLU ASP LEU ARG VAL LEU SER SEQRES 32 A 562 ALA LEU THR GLY THR GLU PHE LYS PRO ARG SER ALA LEU SEQRES 33 A 562 LYS CYS LYS GLY PHE HIS VAL PRO ALA LYS GLU GLN VAL SEQRES 34 A 562 GLU GLY MET GLY ALA ALA LEU MET SER ILE LYS LEU GLN SEQRES 35 A 562 PHE TRP ALA PRO MET THR ARG SER GLY GLY ASN GLU VAL SEQRES 36 A 562 GLY GLY ASP GLY GLY SER GLY GLN ILE SER CYS SER PRO SEQRES 37 A 562 VAL PHE ALA VAL GLU ARG PRO ILE ALA LEU SER LYS GLN SEQRES 38 A 562 ALA VAL ARG ARG MET LEU SER MET ASN ILE GLU GLY ARG SEQRES 39 A 562 ASP ALA ASP VAL LYS GLY ASN LEU LEU LYS MET MET ASN SEQRES 40 A 562 ASP SER MET ALA LYS LYS THR SER GLY ASN ALA PHE ILE SEQRES 41 A 562 GLY LYS LYS MET PHE GLN ILE SER ASP LYS ASN LYS THR SEQRES 42 A 562 ASN PRO VAL GLU ILE GLN ILE LYS GLN THR ILE PRO ASN SEQRES 43 A 562 PHE PHE PHE GLY ARG ASP THR ALA GLU ASP TYR ASP ASP SEQRES 44 A 562 LEU ASP TYR SEQRES 1 B 562 GLY SER MET SER ASN MET ASP ILE ASP GLY ILE ASN THR SEQRES 2 B 562 GLY THR ILE ASP LYS THR PRO GLU GLU ILE THR SER GLY SEQRES 3 B 562 THR SER GLY THR THR ARG PRO ILE ILE ARG PRO ALA THR SEQRES 4 B 562 LEU ALA PRO PRO SER ASN LYS ARG THR ARG ASN PRO SER SEQRES 5 B 562 PRO GLU ARG ALA THR THR SER SER GLU ASP ASP VAL GLY SEQRES 6 B 562 ARG LYS THR GLN LYS LYS GLN THR PRO THR GLU ILE LYS SEQRES 7 B 562 LYS SER VAL TYR ASN MET VAL VAL LYS LEU GLY GLU PHE SEQRES 8 B 562 TYR ASN GLN MET MET VAL LYS ALA GLY LEU ASN ASP ASP SEQRES 9 B 562 MET GLU ARG ASN LEU ILE GLN ASN ALA HIS ALA VAL GLU SEQRES 10 B 562 ARG ILE LEU LEU ALA ALA THR ASP ASP LYS LYS THR GLU SEQRES 11 B 562 PHE GLN LYS LYS LYS ASN ALA ARG ASP VAL LYS GLU GLY SEQRES 12 B 562 LYS GLU GLU ILE ASP HIS ASN LYS THR GLY GLY THR PHE SEQRES 13 B 562 TYR LYS MET VAL ARG ASP ASP LYS THR ILE TYR PHE SER SEQRES 14 B 562 PRO ILE ARG ILE THR PHE LEU LYS GLU GLU VAL LYS THR SEQRES 15 B 562 MET TYR LYS THR THR MET GLY SER ASP GLY PHE SER GLY SEQRES 16 B 562 LEU ASN HIS ILE MET ILE GLY HIS SER GLN MET ASN ASP SEQRES 17 B 562 VAL CYS PHE GLN ARG SER LYS ALA LEU LYS ARG VAL GLY SEQRES 18 B 562 LEU ASP PRO SER LEU ILE SER THR PHE ALA GLY SER THR SEQRES 19 B 562 ILE PRO ARG ARG SER GLY ALA THR GLY VAL ALA ILE LYS SEQRES 20 B 562 GLY GLY GLY THR LEU VAL ALA GLU ALA ILE ARG PHE ILE SEQRES 21 B 562 GLY ARG ALA MET ALA ASP ARG GLY LEU LEU ARG ASP ILE SEQRES 22 B 562 LYS ALA LYS THR ALA TYR GLU LYS ILE LEU LEU ASN LEU SEQRES 23 B 562 LYS ASN LYS CYS SER ALA PRO GLN GLN LYS ALA LEU VAL SEQRES 24 B 562 ASP GLN VAL ILE GLY SER ARG ASN PRO GLY ILE ALA ASP SEQRES 25 B 562 ILE GLU ASP LEU THR LEU LEU ALA ARG SER MET VAL VAL SEQRES 26 B 562 VAL ARG PRO SER VAL ALA SER LYS VAL VAL LEU PRO ILE SEQRES 27 B 562 SER ILE TYR ALA LYS ILE PRO GLN LEU GLY PHE ASN VAL SEQRES 28 B 562 GLU GLU TYR SER MET VAL GLY TYR GLU ALA MET ALA LEU SEQRES 29 B 562 TYR ASN MET ALA THR PRO VAL SER ILE LEU ARG MET GLY SEQRES 30 B 562 ASP ASP ALA LYS ASP LYS SER GLN LEU PHE PHE MET SER SEQRES 31 B 562 CYS PHE GLY ALA ALA TYR GLU ASP LEU ARG VAL LEU SER SEQRES 32 B 562 ALA LEU THR GLY THR GLU PHE LYS PRO ARG SER ALA LEU SEQRES 33 B 562 LYS CYS LYS GLY PHE HIS VAL PRO ALA LYS GLU GLN VAL SEQRES 34 B 562 GLU GLY MET GLY ALA ALA LEU MET SER ILE LYS LEU GLN SEQRES 35 B 562 PHE TRP ALA PRO MET THR ARG SER GLY GLY ASN GLU VAL SEQRES 36 B 562 GLY GLY ASP GLY GLY SER GLY GLN ILE SER CYS SER PRO SEQRES 37 B 562 VAL PHE ALA VAL GLU ARG PRO ILE ALA LEU SER LYS GLN SEQRES 38 B 562 ALA VAL ARG ARG MET LEU SER MET ASN ILE GLU GLY ARG SEQRES 39 B 562 ASP ALA ASP VAL LYS GLY ASN LEU LEU LYS MET MET ASN SEQRES 40 B 562 ASP SER MET ALA LYS LYS THR SER GLY ASN ALA PHE ILE SEQRES 41 B 562 GLY LYS LYS MET PHE GLN ILE SER ASP LYS ASN LYS THR SEQRES 42 B 562 ASN PRO VAL GLU ILE GLN ILE LYS GLN THR ILE PRO ASN SEQRES 43 B 562 PHE PHE PHE GLY ARG ASP THR ALA GLU ASP TYR ASP ASP SEQRES 44 B 562 LEU ASP TYR HELIX 1 1 GLU A 74 GLY A 98 1 25 HELIX 2 2 ASP A 101 ASN A 106 1 6 HELIX 3 3 LEU A 107 THR A 122 1 16 HELIX 4 4 LEU A 174 GLY A 187 1 14 HELIX 5 5 ASP A 189 PHE A 209 1 21 HELIX 6 6 ARG A 211 VAL A 218 1 8 HELIX 7 7 LEU A 224 PHE A 228 5 5 HELIX 8 8 PRO A 234 ARG A 236 5 3 HELIX 9 9 SER A 237 VAL A 242 1 6 HELIX 10 10 GLY A 246 ASP A 264 1 19 HELIX 11 11 ARG A 265 LEU A 268 5 4 HELIX 12 12 LYS A 272 LEU A 284 1 13 HELIX 13 13 ALA A 290 SER A 303 1 14 HELIX 14 14 GLY A 307 VAL A 324 1 18 HELIX 15 15 PRO A 335 ALA A 340 1 6 HELIX 16 16 LYS A 341 GLY A 346 1 6 HELIX 17 17 GLY A 356 ALA A 366 1 11 HELIX 18 18 ASP A 377 GLY A 391 1 15 HELIX 19 19 ASP A 396 GLY A 405 1 10 HELIX 20 20 SER A 477 MET A 487 1 11 HELIX 21 21 ASP A 495 ALA A 509 1 15 HELIX 22 22 GLU B 74 GLY B 98 1 25 HELIX 23 23 ASP B 101 ASN B 106 1 6 HELIX 24 24 LEU B 107 THR B 122 1 16 HELIX 25 25 LYS B 175 GLY B 187 1 13 HELIX 26 26 ASP B 189 PHE B 209 1 21 HELIX 27 27 ARG B 211 VAL B 218 1 8 HELIX 28 28 LEU B 224 PHE B 228 5 5 HELIX 29 29 PRO B 234 ARG B 236 5 3 HELIX 30 30 SER B 237 VAL B 242 1 6 HELIX 31 31 ALA B 243 LYS B 245 5 3 HELIX 32 32 GLY B 246 ASP B 264 1 19 HELIX 33 33 ILE B 271 LEU B 284 1 14 HELIX 34 34 ALA B 290 GLY B 302 1 13 HELIX 35 35 GLY B 307 MET B 321 1 15 HELIX 36 36 PRO B 335 ALA B 340 1 6 HELIX 37 37 GLY B 356 ALA B 366 1 11 HELIX 38 38 ASP B 377 GLY B 391 1 15 HELIX 39 39 ALA B 392 GLU B 395 5 4 HELIX 40 40 ASP B 396 GLY B 405 1 10 HELIX 41 41 SER B 477 MET B 487 1 11 HELIX 42 42 ASP B 495 LYS B 510 1 16 SHEET 1 A 2 GLY A 151 GLY A 152 0 SHEET 2 A 2 ILE A 171 THR A 172 -1 O ILE A 171 N GLY A 152 SHEET 1 B 2 TYR A 155 VAL A 158 0 SHEET 2 B 2 TYR A 165 PRO A 168 -1 O SER A 167 N LYS A 156 SHEET 1 C 2 VAL A 369 ILE A 371 0 SHEET 2 C 2 ALA A 432 LEU A 434 -1 O ALA A 433 N SER A 370 SHEET 1 D 2 PHE A 441 TRP A 442 0 SHEET 2 D 2 PHE A 523 GLN A 524 -1 O PHE A 523 N TRP A 442 SHEET 1 E 2 LYS B 149 THR B 150 0 SHEET 2 E 2 PHE B 173 LEU B 174 -1 O PHE B 173 N THR B 150 SHEET 1 F 2 TYR B 155 ARG B 159 0 SHEET 2 F 2 ILE B 164 PRO B 168 -1 O SER B 167 N LYS B 156 SHEET 1 G 2 VAL B 369 ILE B 371 0 SHEET 2 G 2 ALA B 432 LEU B 434 -1 O ALA B 433 N SER B 370 SHEET 1 H 2 PHE B 441 TRP B 442 0 SHEET 2 H 2 PHE B 523 GLN B 524 -1 O PHE B 523 N TRP B 442 CRYST1 106.951 123.342 198.083 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005048 0.00000