HEADER METAL BINDING PROTEIN 24-AUG-11 3TJ8 TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREE BOUND TO NI2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREASE ACCESSORY PROTEIN UREE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: UREE, HP_0070; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.BANASZAK,M.BELLUCCI,B.ZAMBELLI,W.R.RYPNIEWSKI,S.CIURLI REVDAT 4 03-APR-24 3TJ8 1 REMARK REVDAT 3 28-FEB-24 3TJ8 1 REMARK LINK REVDAT 2 01-FEB-12 3TJ8 1 JRNL REVDAT 1 02-NOV-11 3TJ8 0 JRNL AUTH K.BANASZAK,V.MARTIN-DIACONESCU,M.BELLUCCI,B.ZAMBELLI, JRNL AUTH 2 W.RYPNIEWSKI,M.J.MARONEY,S.CIURLI JRNL TITL CRYSTALLOGRAPHIC AND X-RAY ABSORPTION SPECTROSCOPIC JRNL TITL 2 CHARACTERIZATION OF HELICOBACTER PYLORI UREE BOUND TO NI2+ JRNL TITL 3 AND ZN2+ REVEALS A ROLE FOR THE DISORDERED C-TERMINAL ARM IN JRNL TITL 4 METAL TRAFFICKING. JRNL REF BIOCHEM.J. V. 441 1017 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22010876 JRNL DOI 10.1042/BJ20111659 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 48955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2474 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3353 ; 2.576 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.032 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;15.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1831 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 1.641 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 2.523 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 917 ; 4.027 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 857 ; 6.235 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8826 15.8713 -14.9695 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1376 REMARK 3 T33: 0.1635 T12: 0.0023 REMARK 3 T13: 0.0122 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 5.1589 L22: 2.6176 REMARK 3 L33: 2.7124 L12: -0.7440 REMARK 3 L13: -0.3846 L23: 0.2194 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0344 S13: -0.2878 REMARK 3 S21: 0.2288 S22: -0.0130 S23: 0.3933 REMARK 3 S31: 0.0559 S32: -0.4892 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3477 24.9558 -14.7520 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1314 REMARK 3 T33: 0.2201 T12: 0.0364 REMARK 3 T13: 0.0176 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.3712 L22: 3.0927 REMARK 3 L33: 3.5991 L12: -2.2936 REMARK 3 L13: -0.8880 L23: 1.5239 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0206 S13: 0.3468 REMARK 3 S21: 0.1535 S22: -0.0170 S23: 0.1257 REMARK 3 S31: -0.3517 S32: -0.2194 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4190 15.0714 -15.6013 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0680 REMARK 3 T33: 0.1004 T12: -0.0014 REMARK 3 T13: -0.0004 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 5.6870 L22: 1.4552 REMARK 3 L33: 2.1585 L12: -1.1358 REMARK 3 L13: -0.7075 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.0920 S13: -0.1874 REMARK 3 S21: 0.1385 S22: 0.0084 S23: 0.2899 REMARK 3 S31: -0.0075 S32: -0.3020 S33: 0.0567 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7951 12.4225 -5.4848 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0715 REMARK 3 T33: 0.0605 T12: -0.0181 REMARK 3 T13: -0.0372 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 1.9767 L22: 2.3165 REMARK 3 L33: 1.7004 L12: -0.7041 REMARK 3 L13: 0.2729 L23: -0.6417 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0547 S13: 0.0519 REMARK 3 S21: -0.0332 S22: -0.1533 S23: -0.1831 REMARK 3 S31: -0.1390 S32: 0.1852 S33: 0.1930 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0520 13.1252 -12.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.1256 REMARK 3 T33: 0.0464 T12: -0.0179 REMARK 3 T13: -0.0395 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.5987 L22: 5.2005 REMARK 3 L33: 4.1290 L12: 1.7445 REMARK 3 L13: -1.2905 L23: -2.7775 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.1079 S13: -0.0512 REMARK 3 S21: -0.0092 S22: -0.0661 S23: -0.1539 REMARK 3 S31: -0.1605 S32: 0.3854 S33: 0.0873 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6742 12.0697 -12.1328 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.0562 REMARK 3 T33: 0.0859 T12: -0.0070 REMARK 3 T13: -0.0200 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 5.3462 L22: 1.4723 REMARK 3 L33: 3.2325 L12: -0.5959 REMARK 3 L13: 0.1902 L23: -0.4767 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: -0.0839 S13: -0.1287 REMARK 3 S21: 0.0491 S22: -0.0209 S23: -0.0183 REMARK 3 S31: -0.0007 S32: 0.1404 S33: 0.1186 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 6 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5493 24.3628 6.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.1319 REMARK 3 T33: 0.2138 T12: 0.0352 REMARK 3 T13: 0.0583 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 7.0732 L22: 26.9697 REMARK 3 L33: 22.9363 L12: 1.5771 REMARK 3 L13: -4.2118 L23: -1.7464 REMARK 3 S TENSOR REMARK 3 S11: 0.1598 S12: 0.0128 S13: -0.2791 REMARK 3 S21: -0.2702 S22: 0.1779 S23: -1.0661 REMARK 3 S31: 0.7119 S32: 0.0277 S33: -0.3377 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1065 15.8218 14.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.0954 REMARK 3 T33: 0.1882 T12: -0.0429 REMARK 3 T13: -0.0944 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 6.3349 L22: 2.6556 REMARK 3 L33: 3.7702 L12: -0.3753 REMARK 3 L13: -0.1595 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.2172 S12: 0.2004 S13: -0.1154 REMARK 3 S21: -0.1375 S22: 0.1950 S23: -0.1767 REMARK 3 S31: 0.6821 S32: 0.1042 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4761 21.2914 12.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.1082 REMARK 3 T33: 0.1815 T12: -0.0061 REMARK 3 T13: -0.0668 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.9734 L22: 3.3021 REMARK 3 L33: 4.6846 L12: 0.7592 REMARK 3 L13: -2.2747 L23: -0.6893 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.1140 S13: 0.0731 REMARK 3 S21: -0.2173 S22: 0.0918 S23: -0.4190 REMARK 3 S31: 0.2477 S32: -0.0467 S33: -0.1014 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4596 13.7551 7.2156 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1850 REMARK 3 T33: 0.0671 T12: -0.0936 REMARK 3 T13: -0.0545 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.3962 L22: 1.7337 REMARK 3 L33: 1.8392 L12: 0.1811 REMARK 3 L13: 0.6404 L23: 1.2685 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: -0.2538 S13: 0.1652 REMARK 3 S21: 0.1735 S22: -0.2432 S23: 0.0947 REMARK 3 S31: -0.1059 S32: 0.0235 S33: 0.2638 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6846 13.5123 10.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1778 REMARK 3 T33: 0.1582 T12: -0.0432 REMARK 3 T13: -0.0541 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 2.7838 L22: 4.7663 REMARK 3 L33: 2.8664 L12: 2.3472 REMARK 3 L13: 0.0361 L23: 0.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.2288 S13: 0.2891 REMARK 3 S21: 0.3073 S22: -0.1647 S23: 0.5351 REMARK 3 S31: -0.1272 S32: -0.0303 S33: 0.1823 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0174 16.1121 7.8959 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.2460 REMARK 3 T33: 0.2433 T12: -0.0692 REMARK 3 T13: -0.0810 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 4.5855 L22: 1.9933 REMARK 3 L33: 0.7133 L12: -0.4084 REMARK 3 L13: 0.9662 L23: 0.8986 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: 0.1571 S13: 0.2245 REMARK 3 S21: -0.0341 S22: -0.1231 S23: -0.0631 REMARK 3 S31: -0.0425 S32: 0.0116 S33: 0.0929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91885 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 58.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44800 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TJ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.33250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.33250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.77600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.57250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.77600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.57250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.33250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.77600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.57250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.33250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.77600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.57250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 253 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 150 REMARK 465 PRO A 151 REMARK 465 HIS A 152 REMARK 465 SER A 153 REMARK 465 GLU A 154 REMARK 465 PRO A 155 REMARK 465 ASN A 156 REMARK 465 PHE A 157 REMARK 465 LYS A 158 REMARK 465 VAL A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ALA A 162 REMARK 465 SER A 163 REMARK 465 ASP A 164 REMARK 465 PHE A 165 REMARK 465 LYS A 166 REMARK 465 VAL A 167 REMARK 465 VAL A 168 REMARK 465 VAL A 169 REMARK 465 LYS A 170 REMARK 465 SER B 153 REMARK 465 GLU B 154 REMARK 465 PRO B 155 REMARK 465 ASN B 156 REMARK 465 PHE B 157 REMARK 465 LYS B 158 REMARK 465 VAL B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 ALA B 162 REMARK 465 SER B 163 REMARK 465 ASP B 164 REMARK 465 PHE B 165 REMARK 465 LYS B 166 REMARK 465 VAL B 167 REMARK 465 VAL B 168 REMARK 465 VAL B 169 REMARK 465 LYS B 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CZ NH1 NH2 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 38 CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 128 CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 38 CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 GLU B 109 CG CD OE1 OE2 REMARK 470 LYS B 120 CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 143 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 31 CG ARG A 31 CD -0.194 REMARK 500 LYS A 32 CE LYS A 32 NZ 0.171 REMARK 500 GLU A 90 CD GLU A 90 OE1 -0.073 REMARK 500 SER A 110 CB SER A 110 OG -0.083 REMARK 500 GLU A 113 CD GLU A 113 OE1 0.071 REMARK 500 PHE A 114 CE2 PHE A 114 CD2 0.126 REMARK 500 SER B 138 CB SER B 138 OG -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 LYS A 115 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 PHE B 112 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B 141 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP B 141 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 -128.36 54.86 REMARK 500 GLU B 67 -113.55 42.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 171 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HIS B 102 NE2 87.7 REMARK 620 3 HIS B 152 NE2 88.4 92.7 REMARK 620 4 HOH B 249 O 178.3 93.3 90.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 174 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TJ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREE BOUND TO ZN2+ REMARK 900 RELATED ID: 3TJA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREE IN THE APO FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE CORRESPONDS TO GB ABM16833.1 DBREF 3TJ8 A 1 170 UNP Q09064 UREE_HELPY 1 170 DBREF 3TJ8 B 1 170 UNP Q09064 UREE_HELPY 1 170 SEQADV 3TJ8 TYR A 22 UNP Q09064 HIS 22 SEE REMARK 999 SEQADV 3TJ8 TYR B 22 UNP Q09064 HIS 22 SEE REMARK 999 SEQRES 1 A 170 MET ILE ILE GLU ARG LEU VAL GLY ASN LEU ARG ASP LEU SEQRES 2 A 170 ASN PRO LEU ASP PHE SER VAL ASP TYR VAL ASP LEU GLU SEQRES 3 A 170 TRP PHE GLU THR ARG LYS LYS ILE ALA ARG PHE LYS THR SEQRES 4 A 170 ARG GLN GLY LYS ASP ILE ALA ILE ARG LEU LYS ASP ALA SEQRES 5 A 170 PRO LYS LEU GLY LEU SER GLN GLY ASP ILE LEU PHE LYS SEQRES 6 A 170 GLU GLU LYS GLU ILE ILE ALA VAL ASN ILE LEU ASP SER SEQRES 7 A 170 GLU VAL ILE HIS ILE GLN ALA LYS SER VAL ALA GLU VAL SEQRES 8 A 170 ALA LYS ILE CYS TYR GLU ILE GLY ASN ARG HIS ALA ALA SEQRES 9 A 170 LEU TYR TYR GLY GLU SER GLN PHE GLU PHE LYS THR PRO SEQRES 10 A 170 PHE GLU LYS PRO THR LEU ALA LEU LEU GLU LYS LEU GLY SEQRES 11 A 170 VAL GLN ASN ARG VAL LEU SER SER LYS LEU ASP SER LYS SEQRES 12 A 170 GLU ARG LEU THR VAL SER MET PRO HIS SER GLU PRO ASN SEQRES 13 A 170 PHE LYS VAL SER LEU ALA SER ASP PHE LYS VAL VAL VAL SEQRES 14 A 170 LYS SEQRES 1 B 170 MET ILE ILE GLU ARG LEU VAL GLY ASN LEU ARG ASP LEU SEQRES 2 B 170 ASN PRO LEU ASP PHE SER VAL ASP TYR VAL ASP LEU GLU SEQRES 3 B 170 TRP PHE GLU THR ARG LYS LYS ILE ALA ARG PHE LYS THR SEQRES 4 B 170 ARG GLN GLY LYS ASP ILE ALA ILE ARG LEU LYS ASP ALA SEQRES 5 B 170 PRO LYS LEU GLY LEU SER GLN GLY ASP ILE LEU PHE LYS SEQRES 6 B 170 GLU GLU LYS GLU ILE ILE ALA VAL ASN ILE LEU ASP SER SEQRES 7 B 170 GLU VAL ILE HIS ILE GLN ALA LYS SER VAL ALA GLU VAL SEQRES 8 B 170 ALA LYS ILE CYS TYR GLU ILE GLY ASN ARG HIS ALA ALA SEQRES 9 B 170 LEU TYR TYR GLY GLU SER GLN PHE GLU PHE LYS THR PRO SEQRES 10 B 170 PHE GLU LYS PRO THR LEU ALA LEU LEU GLU LYS LEU GLY SEQRES 11 B 170 VAL GLN ASN ARG VAL LEU SER SER LYS LEU ASP SER LYS SEQRES 12 B 170 GLU ARG LEU THR VAL SER MET PRO HIS SER GLU PRO ASN SEQRES 13 B 170 PHE LYS VAL SER LEU ALA SER ASP PHE LYS VAL VAL VAL SEQRES 14 B 170 LYS HET FMT A 171 3 HET FMT A 172 3 HET FMT A 173 3 HET FMT A 174 3 HET NI B 171 1 HET FMT B 172 3 HET FMT B 173 3 HET FMT B 174 3 HET FMT B 175 3 HET FMT B 176 3 HET FMT B 177 3 HETNAM FMT FORMIC ACID HETNAM NI NICKEL (II) ION FORMUL 3 FMT 10(C H2 O2) FORMUL 7 NI NI 2+ FORMUL 14 HOH *154(H2 O) HELIX 1 1 ARG A 11 LEU A 13 5 3 HELIX 2 2 ASN A 14 PHE A 18 5 5 HELIX 3 3 GLU A 26 THR A 30 5 5 HELIX 4 4 SER A 87 ARG A 101 1 15 HELIX 5 5 GLU A 119 GLY A 130 1 12 HELIX 6 6 ASP A 141 LYS A 143 5 3 HELIX 7 7 ASN B 9 LEU B 13 5 5 HELIX 8 8 ASN B 14 PHE B 18 5 5 HELIX 9 9 GLU B 26 THR B 30 5 5 HELIX 10 10 SER B 87 ARG B 101 1 15 HELIX 11 11 GLU B 119 LEU B 129 1 11 HELIX 12 12 ASP B 141 ARG B 145 5 5 SHEET 1 A 3 ILE A 2 ILE A 3 0 SHEET 2 A 3 ASP A 44 ARG A 48 1 O ARG A 48 N ILE A 3 SHEET 3 A 3 ILE A 34 LYS A 38 -1 N PHE A 37 O ILE A 45 SHEET 1 B 4 GLY A 8 ASN A 9 0 SHEET 2 B 4 ASP A 61 GLU A 66 -1 O ILE A 62 N GLY A 8 SHEET 3 B 4 GLU A 69 ILE A 75 -1 O ILE A 71 N LEU A 63 SHEET 4 B 4 SER A 19 LEU A 25 1 N LEU A 25 O ASN A 74 SHEET 1 C 5 GLN A 132 SER A 138 0 SHEET 2 C 5 SER A 78 GLN A 84 -1 N VAL A 80 O LEU A 136 SHEET 3 C 5 GLU A 113 PRO A 117 -1 O THR A 116 N ILE A 81 SHEET 4 C 5 LEU A 105 TYR A 107 -1 N TYR A 106 O LYS A 115 SHEET 5 C 5 ARG A 145 LEU A 146 -1 O LEU A 146 N LEU A 105 SHEET 1 D 3 ILE B 2 ILE B 3 0 SHEET 2 D 3 ASP B 44 ARG B 48 1 O ALA B 46 N ILE B 3 SHEET 3 D 3 ILE B 34 LYS B 38 -1 N PHE B 37 O ILE B 45 SHEET 1 E 3 SER B 19 LEU B 25 0 SHEET 2 E 3 GLU B 69 ILE B 75 1 O ILE B 70 N ASP B 21 SHEET 3 E 3 ILE B 62 GLU B 66 -1 N GLU B 66 O GLU B 69 SHEET 1 F 4 TYR B 106 TYR B 107 0 SHEET 2 F 4 GLU B 113 PRO B 117 -1 O LYS B 115 N TYR B 106 SHEET 3 F 4 SER B 78 GLN B 84 -1 N ILE B 81 O THR B 116 SHEET 4 F 4 GLN B 132 SER B 138 -1 O ARG B 134 N HIS B 82 LINK NE2 HIS A 102 NI NI B 171 1555 1555 2.08 LINK NE2 HIS B 102 NI NI B 171 1555 1555 2.15 LINK NE2 HIS B 152 NI NI B 171 1555 1555 1.93 LINK NI NI B 171 O HOH B 249 1555 1555 2.08 SITE 1 AC1 5 HIS A 102 GLU B 4 HIS B 102 HIS B 152 SITE 2 AC1 5 HOH B 249 SITE 1 AC2 6 ASN A 74 LEU A 76 ASP A 77 SER A 137 SITE 2 AC2 6 HOH A 217 HOH A 237 SITE 1 AC3 5 ARG A 31 ARG A 145 HOH A 194 ILE B 34 SITE 2 AC3 5 ARG B 36 SITE 1 AC4 3 HIS B 82 GLN B 132 ARG B 134 SITE 1 AC5 4 ILE A 34 ARG B 31 ARG B 145 HOH B 182 SITE 1 AC6 3 ARG A 48 ARG B 101 GLU B 119 SITE 1 AC7 3 HIS A 82 GLN A 132 ARG A 134 SITE 1 AC8 4 ARG A 40 ASN A 74 HOH A 217 HOH A 237 SITE 1 AC9 7 GLN A 84 SER A 110 PHE A 112 GLN B 84 SITE 2 AC9 7 SER B 110 PHE B 112 HOH B 222 SITE 1 BC1 2 ARG B 40 ASN B 74 SITE 1 BC2 5 GLN A 111 HOH A 183 HOH A 221 HOH A 248 SITE 2 BC2 5 ALA B 89 CRYST1 67.552 117.145 98.665 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010135 0.00000