HEADER METAL BINDING PROTEIN 24-AUG-11 3TJA TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREE IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREASE ACCESSORY PROTEIN UREE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: UREE, HP_0070; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.BANASZAK,M.BELLUCCI,B.ZAMBELLI,W.R.RYPNIEWSKI,S.CIURLI REVDAT 3 13-SEP-23 3TJA 1 REMARK REVDAT 2 01-FEB-12 3TJA 1 JRNL REVDAT 1 02-NOV-11 3TJA 0 JRNL AUTH K.BANASZAK,V.MARTIN-DIACONESCU,M.BELLUCCI,B.ZAMBELLI, JRNL AUTH 2 W.RYPNIEWSKI,M.J.MARONEY,S.CIURLI JRNL TITL CRYSTALLOGRAPHIC AND X-RAY ABSORPTION SPECTROSCOPIC JRNL TITL 2 CHARACTERIZATION OF HELICOBACTER PYLORI UREE BOUND TO NI2+ JRNL TITL 3 AND ZN2+ REVEALS A ROLE FOR THE DISORDERED C-TERMINAL ARM IN JRNL TITL 4 METAL TRAFFICKING. JRNL REF BIOCHEM.J. V. 441 1017 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22010876 JRNL DOI 10.1042/BJ20111659 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 38745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.75000 REMARK 3 B22 (A**2) : -1.45000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.476 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4826 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6515 ; 1.947 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 6.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;39.729 ;24.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 906 ;17.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3526 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2978 ; 1.135 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4793 ; 1.930 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 3.307 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1719 ; 5.262 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3990 -0.4999 3.9104 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1717 REMARK 3 T33: 0.2679 T12: 0.0289 REMARK 3 T13: 0.0698 T23: 0.1308 REMARK 3 L TENSOR REMARK 3 L11: 4.6829 L22: 3.1315 REMARK 3 L33: 4.7551 L12: 3.7668 REMARK 3 L13: -2.6779 L23: -1.6347 REMARK 3 S TENSOR REMARK 3 S11: -0.1687 S12: -0.0659 S13: -0.0286 REMARK 3 S21: -0.0304 S22: -0.0320 S23: 0.0734 REMARK 3 S31: 0.5285 S32: 0.0140 S33: 0.2007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3214 5.9967 -0.3723 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.1028 REMARK 3 T33: 0.1085 T12: -0.0111 REMARK 3 T13: -0.0171 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.5896 L22: 4.7222 REMARK 3 L33: 2.4924 L12: -1.2533 REMARK 3 L13: -0.4992 L23: -0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.1680 S13: -0.2460 REMARK 3 S21: 0.0991 S22: 0.0444 S23: 0.0180 REMARK 3 S31: 0.3041 S32: 0.0770 S33: -0.0416 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9465 13.7959 -23.1234 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0729 REMARK 3 T33: 0.0692 T12: 0.0053 REMARK 3 T13: -0.0572 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.1828 L22: 3.4598 REMARK 3 L33: 2.3291 L12: 1.4056 REMARK 3 L13: 1.6285 L23: 1.5194 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: 0.2230 S13: 0.0256 REMARK 3 S21: -0.0957 S22: -0.0919 S23: -0.0459 REMARK 3 S31: -0.1401 S32: 0.0547 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8291 16.6769 -20.4277 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.0868 REMARK 3 T33: 0.0720 T12: -0.0025 REMARK 3 T13: -0.0747 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 3.1118 L22: 6.6743 REMARK 3 L33: 3.1702 L12: -0.5721 REMARK 3 L13: 1.1070 L23: 0.4202 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.0120 S13: 0.1824 REMARK 3 S21: 0.0727 S22: -0.2290 S23: -0.0721 REMARK 3 S31: -0.1080 S32: -0.1738 S33: 0.1643 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8813 11.5375 -13.1194 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1401 REMARK 3 T33: 0.1744 T12: -0.0185 REMARK 3 T13: -0.0447 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.6785 L22: 4.7399 REMARK 3 L33: 7.5623 L12: 2.1902 REMARK 3 L13: 2.7614 L23: -0.6211 REMARK 3 S TENSOR REMARK 3 S11: 0.2703 S12: -0.0879 S13: -0.4415 REMARK 3 S21: 0.2478 S22: -0.2272 S23: -0.1652 REMARK 3 S31: 0.5743 S32: -0.1213 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): -43.6353 11.2655 -52.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: 0.1858 REMARK 3 T33: 0.1589 T12: -0.0285 REMARK 3 T13: -0.0095 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.0710 L22: 2.4908 REMARK 3 L33: 2.9218 L12: -1.3479 REMARK 3 L13: -0.8103 L23: -0.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.1356 S12: -0.0250 S13: 0.2924 REMARK 3 S21: 0.0152 S22: -0.0433 S23: -0.0178 REMARK 3 S31: -0.0080 S32: -0.1771 S33: -0.0923 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7428 11.1516 -55.1141 REMARK 3 T TENSOR REMARK 3 T11: 0.1019 T22: 0.1266 REMARK 3 T33: 0.1375 T12: -0.0138 REMARK 3 T13: -0.0067 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 3.8161 L22: 4.1126 REMARK 3 L33: 5.6584 L12: -1.1507 REMARK 3 L13: -2.0297 L23: -0.2101 REMARK 3 S TENSOR REMARK 3 S11: 0.3008 S12: 0.1796 S13: 0.4818 REMARK 3 S21: -0.0757 S22: -0.0265 S23: -0.2691 REMARK 3 S31: -0.2743 S32: -0.1474 S33: -0.2743 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): -34.8516 1.7269 -29.3559 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.1072 REMARK 3 T33: 0.0874 T12: -0.0341 REMARK 3 T13: -0.0458 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.3547 L22: 5.3764 REMARK 3 L33: 5.9875 L12: 0.8264 REMARK 3 L13: 0.6336 L23: 2.2207 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.0923 S13: -0.0491 REMARK 3 S21: 0.1172 S22: -0.1511 S23: 0.1020 REMARK 3 S31: 0.3072 S32: -0.3606 S33: 0.1352 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4860 -7.1811 -28.5218 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.1260 REMARK 3 T33: 0.2751 T12: 0.0140 REMARK 3 T13: -0.1416 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 16.9073 L22: 4.2054 REMARK 3 L33: 17.2861 L12: -0.7325 REMARK 3 L13: -8.2971 L23: 3.3452 REMARK 3 S TENSOR REMARK 3 S11: -0.1256 S12: -0.3438 S13: -0.8473 REMARK 3 S21: 0.8316 S22: -0.1624 S23: -0.7552 REMARK 3 S31: 1.2701 S32: 0.6150 S33: 0.2880 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): -36.9155 4.4652 -37.7809 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.1634 REMARK 3 T33: 0.0563 T12: 0.0384 REMARK 3 T13: -0.0078 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.7239 L22: 18.0799 REMARK 3 L33: 8.0117 L12: -1.4403 REMARK 3 L13: 3.9148 L23: 3.2700 REMARK 3 S TENSOR REMARK 3 S11: -0.2678 S12: 0.0638 S13: 0.1162 REMARK 3 S21: -0.2650 S22: 0.1126 S23: 0.0532 REMARK 3 S31: -0.7774 S32: -0.1176 S33: 0.1552 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 23 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7004 32.3997 -11.6439 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1391 REMARK 3 T33: 0.1465 T12: -0.0136 REMARK 3 T13: -0.0126 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.6978 L22: 1.6732 REMARK 3 L33: 2.2617 L12: 0.3257 REMARK 3 L13: 1.7427 L23: 0.6494 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: 0.0699 S13: 0.1977 REMARK 3 S21: -0.4230 S22: -0.0585 S23: 0.1823 REMARK 3 S31: -0.1056 S32: 0.0015 S33: 0.2274 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 78 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6495 29.8329 -2.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.1189 REMARK 3 T33: 0.0984 T12: -0.0141 REMARK 3 T13: -0.0093 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.3306 L22: 3.0540 REMARK 3 L33: 2.1236 L12: 1.2486 REMARK 3 L13: -0.2943 L23: -0.0849 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.1371 S13: 0.2210 REMARK 3 S21: 0.0317 S22: -0.0190 S23: -0.1072 REMARK 3 S31: -0.2393 S32: 0.1439 S33: -0.0121 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 79 C 118 REMARK 3 ORIGIN FOR THE GROUP (A): -28.6230 22.6664 15.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.1224 REMARK 3 T33: 0.0537 T12: -0.0224 REMARK 3 T13: 0.0013 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.4461 L22: 2.8563 REMARK 3 L33: 2.4173 L12: -0.8437 REMARK 3 L13: -1.2989 L23: -0.0770 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.0740 S13: 0.0624 REMARK 3 S21: 0.0195 S22: -0.0582 S23: -0.0239 REMARK 3 S31: 0.0139 S32: 0.1016 S33: 0.1055 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 119 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7963 14.4705 20.1692 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.1243 REMARK 3 T33: 0.0956 T12: 0.0461 REMARK 3 T13: 0.0356 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 22.7011 L22: 6.2477 REMARK 3 L33: 7.2112 L12: -0.7136 REMARK 3 L13: -0.4733 L23: 0.9362 REMARK 3 S TENSOR REMARK 3 S11: -0.2801 S12: -0.8613 S13: -0.5013 REMARK 3 S21: 0.8315 S22: 0.1667 S23: -0.1839 REMARK 3 S31: 0.1788 S32: 0.0877 S33: 0.1134 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 134 C 148 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2102 24.4648 7.2614 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.1675 REMARK 3 T33: 0.1550 T12: -0.0213 REMARK 3 T13: 0.0244 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 4.7118 L22: 12.8517 REMARK 3 L33: 5.8550 L12: -3.8071 REMARK 3 L13: -3.9364 L23: 1.5330 REMARK 3 S TENSOR REMARK 3 S11: 0.2735 S12: -0.1587 S13: 0.3975 REMARK 3 S21: -0.0053 S22: -0.0352 S23: -0.1495 REMARK 3 S31: -0.3716 S32: 0.2101 S33: -0.2383 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 36 REMARK 3 ORIGIN FOR THE GROUP (A): -41.9317 23.6948 46.9325 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.1520 REMARK 3 T33: 0.1600 T12: 0.0253 REMARK 3 T13: 0.0198 T23: -0.0808 REMARK 3 L TENSOR REMARK 3 L11: 3.1271 L22: 4.0178 REMARK 3 L33: 4.1739 L12: 0.1346 REMARK 3 L13: 0.4159 L23: -0.1228 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: 0.1385 S13: -0.2233 REMARK 3 S21: -0.0645 S22: -0.0667 S23: 0.3986 REMARK 3 S31: 0.0266 S32: -0.2731 S33: 0.0974 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 37 D 51 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4319 25.5400 53.9336 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.1242 REMARK 3 T33: 0.1416 T12: -0.0436 REMARK 3 T13: 0.0127 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 16.9289 L22: 16.2818 REMARK 3 L33: 4.9081 L12: -14.1254 REMARK 3 L13: -3.5392 L23: 3.1602 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: -0.0296 S13: -0.5416 REMARK 3 S21: 0.4125 S22: -0.1723 S23: 0.5418 REMARK 3 S31: 0.1807 S32: 0.0108 S33: 0.2344 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 52 D 79 REMARK 3 ORIGIN FOR THE GROUP (A): -43.4860 24.1982 45.8992 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.1871 REMARK 3 T33: 0.0906 T12: 0.0166 REMARK 3 T13: -0.0101 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 3.5144 L22: 8.9073 REMARK 3 L33: 4.9034 L12: 1.8658 REMARK 3 L13: -0.6582 L23: -1.1107 REMARK 3 S TENSOR REMARK 3 S11: 0.1903 S12: -0.1277 S13: -0.0890 REMARK 3 S21: -0.0301 S22: -0.0430 S23: 0.4227 REMARK 3 S31: -0.1041 S32: -0.3861 S33: -0.1472 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 80 D 133 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1808 36.1475 23.6463 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.1692 REMARK 3 T33: 0.2262 T12: -0.0358 REMARK 3 T13: 0.0417 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.2466 L22: 6.0555 REMARK 3 L33: 6.3996 L12: -1.0417 REMARK 3 L13: -0.4088 L23: 1.0754 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.0148 S13: 0.1742 REMARK 3 S21: 0.1249 S22: 0.1627 S23: -0.3818 REMARK 3 S31: -0.8514 S32: 0.1062 S33: -0.1922 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 134 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2271 30.9649 32.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.1909 T22: 0.1967 REMARK 3 T33: 0.0881 T12: -0.0206 REMARK 3 T13: -0.0370 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.4657 L22: 12.9279 REMARK 3 L33: 8.4468 L12: 1.6993 REMARK 3 L13: -1.6453 L23: -1.6242 REMARK 3 S TENSOR REMARK 3 S11: -0.3343 S12: 0.2723 S13: 0.0486 REMARK 3 S21: 0.3210 S22: 0.3693 S23: -0.3780 REMARK 3 S31: 0.0562 S32: -0.0485 S33: -0.0350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59300 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TJ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M AMMONIUM SULFATE, 1.0M LITHIUM REMARK 280 SULFATE, 0.1M SODIUM CITRATE PH 5.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.49950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.23400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.49950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.23400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 150 REMARK 465 PRO A 151 REMARK 465 HIS A 152 REMARK 465 SER A 153 REMARK 465 GLU A 154 REMARK 465 PRO A 155 REMARK 465 ASN A 156 REMARK 465 PHE A 157 REMARK 465 LYS A 158 REMARK 465 VAL A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ALA A 162 REMARK 465 SER A 163 REMARK 465 ASP A 164 REMARK 465 PHE A 165 REMARK 465 LYS A 166 REMARK 465 VAL A 167 REMARK 465 VAL A 168 REMARK 465 VAL A 169 REMARK 465 LYS A 170 REMARK 465 PRO B 151 REMARK 465 HIS B 152 REMARK 465 SER B 153 REMARK 465 GLU B 154 REMARK 465 PRO B 155 REMARK 465 ASN B 156 REMARK 465 PHE B 157 REMARK 465 LYS B 158 REMARK 465 VAL B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 ALA B 162 REMARK 465 SER B 163 REMARK 465 ASP B 164 REMARK 465 PHE B 165 REMARK 465 LYS B 166 REMARK 465 VAL B 167 REMARK 465 VAL B 168 REMARK 465 VAL B 169 REMARK 465 LYS B 170 REMARK 465 SER C 149 REMARK 465 MET C 150 REMARK 465 PRO C 151 REMARK 465 HIS C 152 REMARK 465 SER C 153 REMARK 465 GLU C 154 REMARK 465 PRO C 155 REMARK 465 ASN C 156 REMARK 465 PHE C 157 REMARK 465 LYS C 158 REMARK 465 VAL C 159 REMARK 465 SER C 160 REMARK 465 LEU C 161 REMARK 465 ALA C 162 REMARK 465 SER C 163 REMARK 465 ASP C 164 REMARK 465 PHE C 165 REMARK 465 LYS C 166 REMARK 465 VAL C 167 REMARK 465 VAL C 168 REMARK 465 VAL C 169 REMARK 465 LYS C 170 REMARK 465 PRO D 151 REMARK 465 HIS D 152 REMARK 465 SER D 153 REMARK 465 GLU D 154 REMARK 465 PRO D 155 REMARK 465 ASN D 156 REMARK 465 PHE D 157 REMARK 465 LYS D 158 REMARK 465 VAL D 159 REMARK 465 SER D 160 REMARK 465 LEU D 161 REMARK 465 ALA D 162 REMARK 465 SER D 163 REMARK 465 ASP D 164 REMARK 465 PHE D 165 REMARK 465 LYS D 166 REMARK 465 VAL D 167 REMARK 465 VAL D 168 REMARK 465 VAL D 169 REMARK 465 LYS D 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 86 CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 50 CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 109 CG CD OE1 OE2 REMARK 470 VAL B 148 CG1 CG2 REMARK 470 MET B 150 CG SD CE REMARK 470 ARG C 31 NE CZ NH1 NH2 REMARK 470 LYS C 54 CG CD CE NZ REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 ARG C 134 CD NE CZ NH1 NH2 REMARK 470 LYS D 50 CG CD CE NZ REMARK 470 ASP D 51 CG OD1 OD2 REMARK 470 LYS D 54 CG CD CE NZ REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 ARG D 101 CG CD NE CZ NH1 NH2 REMARK 470 MET D 150 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 LEU B 136 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 68.73 -118.86 REMARK 500 GLU A 67 -120.78 47.94 REMARK 500 GLU B 67 -125.46 44.13 REMARK 500 SER B 149 27.92 -157.54 REMARK 500 VAL C 7 57.08 -119.27 REMARK 500 GLU C 67 -103.34 59.42 REMARK 500 ASP D 51 53.86 -155.28 REMARK 500 GLU D 67 -121.46 55.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 172 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TJ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREE BOUND TO NI2+ REMARK 900 RELATED ID: 3TJ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREE BOUND TO ZN2+ REMARK 999 REMARK 999 SEQUENCE REMARK 999 TYR 22 IS AGREES WITH THE SEQUENCE IN GB ABM16833.1 DBREF 3TJA A 1 170 UNP Q09064 UREE_HELPY 1 170 DBREF 3TJA B 1 170 UNP Q09064 UREE_HELPY 1 170 DBREF 3TJA C 1 170 UNP Q09064 UREE_HELPY 1 170 DBREF 3TJA D 1 170 UNP Q09064 UREE_HELPY 1 170 SEQADV 3TJA TYR A 22 UNP Q09064 HIS 22 SEE REMARK 999 SEQADV 3TJA TYR B 22 UNP Q09064 HIS 22 SEE REMARK 999 SEQADV 3TJA TYR C 22 UNP Q09064 HIS 22 SEE REMARK 999 SEQADV 3TJA TYR D 22 UNP Q09064 HIS 22 SEE REMARK 999 SEQRES 1 A 170 MET ILE ILE GLU ARG LEU VAL GLY ASN LEU ARG ASP LEU SEQRES 2 A 170 ASN PRO LEU ASP PHE SER VAL ASP TYR VAL ASP LEU GLU SEQRES 3 A 170 TRP PHE GLU THR ARG LYS LYS ILE ALA ARG PHE LYS THR SEQRES 4 A 170 ARG GLN GLY LYS ASP ILE ALA ILE ARG LEU LYS ASP ALA SEQRES 5 A 170 PRO LYS LEU GLY LEU SER GLN GLY ASP ILE LEU PHE LYS SEQRES 6 A 170 GLU GLU LYS GLU ILE ILE ALA VAL ASN ILE LEU ASP SER SEQRES 7 A 170 GLU VAL ILE HIS ILE GLN ALA LYS SER VAL ALA GLU VAL SEQRES 8 A 170 ALA LYS ILE CYS TYR GLU ILE GLY ASN ARG HIS ALA ALA SEQRES 9 A 170 LEU TYR TYR GLY GLU SER GLN PHE GLU PHE LYS THR PRO SEQRES 10 A 170 PHE GLU LYS PRO THR LEU ALA LEU LEU GLU LYS LEU GLY SEQRES 11 A 170 VAL GLN ASN ARG VAL LEU SER SER LYS LEU ASP SER LYS SEQRES 12 A 170 GLU ARG LEU THR VAL SER MET PRO HIS SER GLU PRO ASN SEQRES 13 A 170 PHE LYS VAL SER LEU ALA SER ASP PHE LYS VAL VAL VAL SEQRES 14 A 170 LYS SEQRES 1 B 170 MET ILE ILE GLU ARG LEU VAL GLY ASN LEU ARG ASP LEU SEQRES 2 B 170 ASN PRO LEU ASP PHE SER VAL ASP TYR VAL ASP LEU GLU SEQRES 3 B 170 TRP PHE GLU THR ARG LYS LYS ILE ALA ARG PHE LYS THR SEQRES 4 B 170 ARG GLN GLY LYS ASP ILE ALA ILE ARG LEU LYS ASP ALA SEQRES 5 B 170 PRO LYS LEU GLY LEU SER GLN GLY ASP ILE LEU PHE LYS SEQRES 6 B 170 GLU GLU LYS GLU ILE ILE ALA VAL ASN ILE LEU ASP SER SEQRES 7 B 170 GLU VAL ILE HIS ILE GLN ALA LYS SER VAL ALA GLU VAL SEQRES 8 B 170 ALA LYS ILE CYS TYR GLU ILE GLY ASN ARG HIS ALA ALA SEQRES 9 B 170 LEU TYR TYR GLY GLU SER GLN PHE GLU PHE LYS THR PRO SEQRES 10 B 170 PHE GLU LYS PRO THR LEU ALA LEU LEU GLU LYS LEU GLY SEQRES 11 B 170 VAL GLN ASN ARG VAL LEU SER SER LYS LEU ASP SER LYS SEQRES 12 B 170 GLU ARG LEU THR VAL SER MET PRO HIS SER GLU PRO ASN SEQRES 13 B 170 PHE LYS VAL SER LEU ALA SER ASP PHE LYS VAL VAL VAL SEQRES 14 B 170 LYS SEQRES 1 C 170 MET ILE ILE GLU ARG LEU VAL GLY ASN LEU ARG ASP LEU SEQRES 2 C 170 ASN PRO LEU ASP PHE SER VAL ASP TYR VAL ASP LEU GLU SEQRES 3 C 170 TRP PHE GLU THR ARG LYS LYS ILE ALA ARG PHE LYS THR SEQRES 4 C 170 ARG GLN GLY LYS ASP ILE ALA ILE ARG LEU LYS ASP ALA SEQRES 5 C 170 PRO LYS LEU GLY LEU SER GLN GLY ASP ILE LEU PHE LYS SEQRES 6 C 170 GLU GLU LYS GLU ILE ILE ALA VAL ASN ILE LEU ASP SER SEQRES 7 C 170 GLU VAL ILE HIS ILE GLN ALA LYS SER VAL ALA GLU VAL SEQRES 8 C 170 ALA LYS ILE CYS TYR GLU ILE GLY ASN ARG HIS ALA ALA SEQRES 9 C 170 LEU TYR TYR GLY GLU SER GLN PHE GLU PHE LYS THR PRO SEQRES 10 C 170 PHE GLU LYS PRO THR LEU ALA LEU LEU GLU LYS LEU GLY SEQRES 11 C 170 VAL GLN ASN ARG VAL LEU SER SER LYS LEU ASP SER LYS SEQRES 12 C 170 GLU ARG LEU THR VAL SER MET PRO HIS SER GLU PRO ASN SEQRES 13 C 170 PHE LYS VAL SER LEU ALA SER ASP PHE LYS VAL VAL VAL SEQRES 14 C 170 LYS SEQRES 1 D 170 MET ILE ILE GLU ARG LEU VAL GLY ASN LEU ARG ASP LEU SEQRES 2 D 170 ASN PRO LEU ASP PHE SER VAL ASP TYR VAL ASP LEU GLU SEQRES 3 D 170 TRP PHE GLU THR ARG LYS LYS ILE ALA ARG PHE LYS THR SEQRES 4 D 170 ARG GLN GLY LYS ASP ILE ALA ILE ARG LEU LYS ASP ALA SEQRES 5 D 170 PRO LYS LEU GLY LEU SER GLN GLY ASP ILE LEU PHE LYS SEQRES 6 D 170 GLU GLU LYS GLU ILE ILE ALA VAL ASN ILE LEU ASP SER SEQRES 7 D 170 GLU VAL ILE HIS ILE GLN ALA LYS SER VAL ALA GLU VAL SEQRES 8 D 170 ALA LYS ILE CYS TYR GLU ILE GLY ASN ARG HIS ALA ALA SEQRES 9 D 170 LEU TYR TYR GLY GLU SER GLN PHE GLU PHE LYS THR PRO SEQRES 10 D 170 PHE GLU LYS PRO THR LEU ALA LEU LEU GLU LYS LEU GLY SEQRES 11 D 170 VAL GLN ASN ARG VAL LEU SER SER LYS LEU ASP SER LYS SEQRES 12 D 170 GLU ARG LEU THR VAL SER MET PRO HIS SER GLU PRO ASN SEQRES 13 D 170 PHE LYS VAL SER LEU ALA SER ASP PHE LYS VAL VAL VAL SEQRES 14 D 170 LYS HET SO4 A 171 5 HET CL A 172 1 HET SO4 B 171 5 HET SO4 C 171 5 HET SO4 D 171 5 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 10 HOH *100(H2 O) HELIX 1 1 ASN A 9 LEU A 13 5 5 HELIX 2 2 ASN A 14 PHE A 18 5 5 HELIX 3 3 GLU A 26 THR A 30 5 5 HELIX 4 4 SER A 87 ARG A 101 1 15 HELIX 5 5 GLU A 119 GLY A 130 1 12 HELIX 6 6 ASP A 141 ARG A 145 5 5 HELIX 7 7 ASN B 9 LEU B 13 5 5 HELIX 8 8 ASN B 14 PHE B 18 5 5 HELIX 9 9 GLU B 26 THR B 30 5 5 HELIX 10 10 SER B 87 HIS B 102 1 16 HELIX 11 11 GLU B 119 GLY B 130 1 12 HELIX 12 12 ASP B 141 ARG B 145 5 5 HELIX 13 13 ASN C 9 LEU C 13 5 5 HELIX 14 14 GLU C 26 THR C 30 5 5 HELIX 15 15 SER C 87 ARG C 101 1 15 HELIX 16 16 GLU C 119 LEU C 129 1 11 HELIX 17 17 ASP C 141 ARG C 145 5 5 HELIX 18 18 ASN D 9 LEU D 13 5 5 HELIX 19 19 ASN D 14 PHE D 18 5 5 HELIX 20 20 GLU D 26 THR D 30 5 5 HELIX 21 21 SER D 87 HIS D 102 1 16 HELIX 22 22 GLU D 119 GLY D 130 1 12 HELIX 23 23 ASP D 141 ARG D 145 5 5 SHEET 1 A 3 SER A 19 LEU A 25 0 SHEET 2 A 3 GLU A 69 ILE A 75 1 O ASN A 74 N LEU A 25 SHEET 3 A 3 ILE A 62 GLU A 66 -1 N GLU A 66 O GLU A 69 SHEET 1 B 2 ILE A 34 LYS A 38 0 SHEET 2 B 2 ASP A 44 ARG A 48 -1 O ILE A 45 N PHE A 37 SHEET 1 C 4 TYR A 106 TYR A 107 0 SHEET 2 C 4 GLU A 113 PRO A 117 -1 O LYS A 115 N TYR A 106 SHEET 3 C 4 SER A 78 GLN A 84 -1 N ILE A 81 O THR A 116 SHEET 4 C 4 GLN A 132 SER A 138 -1 O SER A 138 N SER A 78 SHEET 1 D 3 ILE B 2 ILE B 3 0 SHEET 2 D 3 ASP B 44 ARG B 48 1 O ALA B 46 N ILE B 3 SHEET 3 D 3 ILE B 34 LYS B 38 -1 N PHE B 37 O ILE B 45 SHEET 1 E 3 SER B 19 LEU B 25 0 SHEET 2 E 3 GLU B 69 ILE B 75 1 O ILE B 70 N ASP B 21 SHEET 3 E 3 ILE B 62 GLU B 66 -1 N LEU B 63 O ILE B 71 SHEET 1 F 4 TYR B 106 TYR B 107 0 SHEET 2 F 4 GLU B 113 PRO B 117 -1 O LYS B 115 N TYR B 106 SHEET 3 F 4 SER B 78 GLN B 84 -1 N ILE B 83 O PHE B 114 SHEET 4 F 4 GLN B 132 SER B 138 -1 O LEU B 136 N VAL B 80 SHEET 1 G 3 SER C 19 LEU C 25 0 SHEET 2 G 3 GLU C 69 ILE C 75 1 O ASN C 74 N VAL C 23 SHEET 3 G 3 ILE C 62 GLU C 66 -1 N GLU C 66 O GLU C 69 SHEET 1 H 2 ILE C 34 LYS C 38 0 SHEET 2 H 2 ASP C 44 ARG C 48 -1 O ILE C 45 N PHE C 37 SHEET 1 I 4 TYR C 106 TYR C 107 0 SHEET 2 I 4 GLU C 113 PRO C 117 -1 O LYS C 115 N TYR C 106 SHEET 3 I 4 SER C 78 GLN C 84 -1 N ILE C 83 O PHE C 114 SHEET 4 I 4 GLN C 132 SER C 138 -1 O ARG C 134 N HIS C 82 SHEET 1 J 3 ILE D 2 ILE D 3 0 SHEET 2 J 3 ASP D 44 ARG D 48 1 O ALA D 46 N ILE D 3 SHEET 3 J 3 ILE D 34 LYS D 38 -1 N PHE D 37 O ILE D 45 SHEET 1 K 3 SER D 19 LEU D 25 0 SHEET 2 K 3 GLU D 69 ILE D 75 1 O ILE D 70 N ASP D 21 SHEET 3 K 3 ILE D 62 GLU D 66 -1 N LEU D 63 O ILE D 71 SHEET 1 L 4 TYR D 106 TYR D 107 0 SHEET 2 L 4 GLU D 113 PRO D 117 -1 O LYS D 115 N TYR D 106 SHEET 3 L 4 SER D 78 GLN D 84 -1 N ILE D 81 O THR D 116 SHEET 4 L 4 GLN D 132 SER D 138 -1 O LEU D 136 N VAL D 80 SITE 1 AC1 4 MET B 1 ILE D 3 GLU D 4 ARG D 5 SITE 1 AC2 3 ARG C 31 LYS C 33 ILE C 34 SITE 1 AC3 4 ARG A 31 LYS A 32 LYS A 33 HOH A 193 SITE 1 AC4 4 ILE B 3 GLU B 4 ARG B 5 MET D 1 SITE 1 AC5 6 ASN A 74 ASP A 77 LYS A 139 ASN C 74 SITE 2 AC5 6 ASP C 77 LYS C 139 CRYST1 68.999 70.468 123.340 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008108 0.00000