HEADER HYDROLASE 25-AUG-11 3TK1 TITLE CRYSTAL STRUCTURE OF A MEAB AND RV1496 ORTHOLOG FROM MYCOBACTERIUM TITLE 2 THERMORESISTIBLE BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE ATPASE/PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1078020; SOURCE 4 STRAIN: ATCC 19527; SOURCE 5 GENE: KEK_00260; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MEAB, MMAA, METHYLMALONIC ACIDURIA, KEYWDS 3 RV1496, THERMOPHILE, GDP, RAS-LIKE GTPASE, G-PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 13-SEP-23 3TK1 1 REMARK SEQADV REVDAT 5 03-JUN-15 3TK1 1 JRNL REVDAT 4 22-APR-15 3TK1 1 REMARK REVDAT 3 19-DEC-12 3TK1 1 COMPND DBREF SEQADV SOURCE REVDAT 2 12-SEP-12 3TK1 1 JRNL REVDAT 1 05-OCT-11 3TK1 0 JRNL AUTH T.E.EDWARDS,L.BAUGH,J.BULLEN,R.O.BAYDO,P.WITTE,K.THOMPKINS, JRNL AUTH 2 I.Q.PHAN,J.ABENDROTH,M.C.CLIFTON,B.SANKARAN,W.C.VAN VOORHIS, JRNL AUTH 3 P.J.MYLER,B.L.STAKER,C.GRUNDNER,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-LIKE JRNL TITL 2 GTPASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 16 91 2015 JRNL REFN ISSN 1345-711X JRNL PMID 25832174 JRNL DOI 10.1007/S10969-015-9197-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, REMARK 1 AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, REMARK 1 AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, REMARK 1 AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, REMARK 1 AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, REMARK 1 AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, REMARK 1 AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER REMARK 1 TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG REMARK 1 TITL 2 TARGETS. REMARK 1 REF TUBERCULOSIS (EDINB) V. 95 142 2015 REMARK 1 REFN ISSN 1472-9792 REMARK 1 PMID 25613812 REMARK 1 DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 23269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.775 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.044 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4554 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2908 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6210 ; 1.492 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7101 ; 1.176 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 5.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;33.103 ;23.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 717 ;16.513 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.920 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 772 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5098 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 888 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5544 6.6226 -21.2493 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.2206 REMARK 3 T33: 0.0500 T12: -0.0732 REMARK 3 T13: -0.0380 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.4627 L22: 0.7730 REMARK 3 L33: 1.1178 L12: -0.3573 REMARK 3 L13: -0.6326 L23: 0.1362 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: -0.1818 S13: 0.0099 REMARK 3 S21: -0.0942 S22: -0.0603 S23: 0.0225 REMARK 3 S31: -0.1098 S32: 0.4035 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 326 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5887 -1.9554 0.9304 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0460 REMARK 3 T33: 0.0880 T12: 0.0151 REMARK 3 T13: -0.0242 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.2769 L22: 0.4449 REMARK 3 L33: 0.1541 L12: 0.1232 REMARK 3 L13: -0.0568 L23: -0.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.0457 S13: 0.0087 REMARK 3 S21: 0.0945 S22: 0.0952 S23: -0.0574 REMARK 3 S31: -0.0082 S32: -0.0331 S33: -0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3TK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23270 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3MD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYTHA.00200.A.A1 PS00590 AT 42.4 MG/ML REMARK 280 WITH 2 MM GDP AGAINST PACT SCREEN CONDITION B10, 0.2 M MGCL2, REMARK 280 0.1 M MES PH 6.0, 20% PEG 6000 WITH 25% ETHYLENE GLYCOL AS CRYO- REMARK 280 PROTECTANT, CRYSTAL TRACKING ID 215739B10, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 89 REMARK 465 PRO A 90 REMARK 465 SER A 91 REMARK 465 SER A 92 REMARK 465 VAL A 93 REMARK 465 ARG A 94 REMARK 465 SER A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 SER A 98 REMARK 465 ILE A 99 REMARK 465 LEU A 100 REMARK 465 GLY A 101 REMARK 465 ASP A 114 REMARK 465 ALA A 115 REMARK 465 TYR A 116 REMARK 465 VAL A 117 REMARK 465 ARG A 118 REMARK 465 PRO A 119 REMARK 465 SER A 120 REMARK 465 PRO A 121 REMARK 465 SER A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 THR A 125 REMARK 465 TYR A 223 REMARK 465 PRO A 224 REMARK 465 ARG A 225 REMARK 465 GLU A 226 REMARK 465 ARG A 326 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 95 REMARK 465 GLY B 96 REMARK 465 GLY B 97 REMARK 465 GLY B 154 REMARK 465 VAL B 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 MET A 74 CG SD CE REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 THR A 104 OG1 CG2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 VAL A 153 CG1 CG2 REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 THR A 227 OG1 CG2 REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 LEU A 325 CG CD1 CD2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 VAL B 93 CG1 CG2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 THR B 104 OG1 CG2 REMARK 470 TYR B 116 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 157 CG CD OE1 NE2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 ARG B 269 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 287 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 295 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 324 CG CD OE1 OE2 REMARK 470 LEU B 325 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 157 48.33 -107.20 REMARK 500 SER B 92 43.95 38.04 REMARK 500 PRO B 119 170.61 -52.89 REMARK 500 SER B 123 -61.96 -90.10 REMARK 500 GLN B 157 45.88 -108.45 REMARK 500 GLU B 226 56.48 -116.97 REMARK 500 GLU B 324 22.68 46.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MD0 RELATED DB: PDB REMARK 900 M. TUBERCULOSIS RV1496 REMARK 900 RELATED ID: 3P32 RELATED DB: PDB REMARK 900 M. TUBERCULOSIS RV1496 REMARK 900 RELATED ID: 3NXS RELATED DB: PDB REMARK 900 M. SMEGMATIS RV1496 ORTHOLOG REMARK 900 RELATED ID: MYTHA.00200.A RELATED DB: TARGETDB DBREF 3TK1 A 1 326 UNP G7CAR0 G7CAR0_MYCTH 1 326 DBREF 3TK1 B 1 326 UNP G7CAR0 G7CAR0_MYCTH 1 326 SEQADV 3TK1 GLY A -3 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 PRO A -2 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 GLY A -1 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 SER A 0 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 GLY B -3 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 PRO B -2 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 GLY B -1 UNP G7CAR0 EXPRESSION TAG SEQADV 3TK1 SER B 0 UNP G7CAR0 EXPRESSION TAG SEQRES 1 A 330 GLY PRO GLY SER MET THR GLN THR VAL LYS ASP LEU ALA SEQRES 2 A 330 ALA ALA ILE ARG SER GLY ASP ARG ALA ALA LEU PRO ARG SEQRES 3 A 330 ALA ILE THR LEU VAL GLU SER THR ARG ALA ASP HIS ARG SEQRES 4 A 330 GLU ARG ALA GLN GLU LEU LEU LEU GLU LEU MET PRO ASP SEQRES 5 A 330 ALA GLY ARG ALA MET HIS VAL GLY ILE THR GLY VAL PRO SEQRES 6 A 330 GLY VAL GLY LYS SER THR SER ILE GLU ALA LEU GLY MET SEQRES 7 A 330 HIS LEU ILE GLU GLN GLY HIS ARG VAL ALA VAL LEU ALA SEQRES 8 A 330 VAL ASP PRO SER SER VAL ARG SER GLY GLY SER ILE LEU SEQRES 9 A 330 GLY ASP LYS THR ARG MET ALA ARG LEU ALA VAL HIS PRO SEQRES 10 A 330 ASP ALA TYR VAL ARG PRO SER PRO SER SER GLY THR LEU SEQRES 11 A 330 GLY GLY VAL ALA LYS ALA THR ARG GLU THR ILE VAL LEU SEQRES 12 A 330 LEU GLU ALA ALA GLY PHE ASP VAL VAL LEU VAL GLU THR SEQRES 13 A 330 VAL GLY VAL GLY GLN SER GLU VAL THR VAL ALA ASP MET SEQRES 14 A 330 VAL ASP THR PHE VAL PHE LEU THR LEU ALA ARG THR GLY SEQRES 15 A 330 ASP GLN LEU GLN GLY ILE LYS LYS GLY VAL LEU GLU LEU SEQRES 16 A 330 ALA ASP ILE VAL VAL VAL ASN LYS ALA ASP GLY GLU HIS SEQRES 17 A 330 ALA VAL GLU ALA ARG LYS ALA ALA ARG GLU LEU ALA GLY SEQRES 18 A 330 ALA MET ARG LEU ILE TYR PRO ARG GLU THR LEU TRP ARG SEQRES 19 A 330 PRO PRO VAL LEU THR MET SER ALA LEU GLU GLY THR GLY SEQRES 20 A 330 VAL ALA GLU LEU TRP GLU THR VAL LEU LYS HIS ARG GLN SEQRES 21 A 330 VAL LEU ILE ASP ALA GLY GLU PHE GLU LYS ARG ARG ARG SEQRES 22 A 330 ASP GLN GLU VAL ASN TRP MET TRP THR MET VAL ARG ASP SEQRES 23 A 330 ALA VAL ILE ASP ARG VAL MET THR SER PRO GLY VAL ARG SEQRES 24 A 330 GLU ILE ARG ALA GLU VAL GLU ARG GLN VAL ARG GLU GLY SEQRES 25 A 330 GLU LEU THR ALA ALA LEU ALA ALA GLN ARG LEU LEU ASP SEQRES 26 A 330 ALA ALA GLU LEU ARG SEQRES 1 B 330 GLY PRO GLY SER MET THR GLN THR VAL LYS ASP LEU ALA SEQRES 2 B 330 ALA ALA ILE ARG SER GLY ASP ARG ALA ALA LEU PRO ARG SEQRES 3 B 330 ALA ILE THR LEU VAL GLU SER THR ARG ALA ASP HIS ARG SEQRES 4 B 330 GLU ARG ALA GLN GLU LEU LEU LEU GLU LEU MET PRO ASP SEQRES 5 B 330 ALA GLY ARG ALA MET HIS VAL GLY ILE THR GLY VAL PRO SEQRES 6 B 330 GLY VAL GLY LYS SER THR SER ILE GLU ALA LEU GLY MET SEQRES 7 B 330 HIS LEU ILE GLU GLN GLY HIS ARG VAL ALA VAL LEU ALA SEQRES 8 B 330 VAL ASP PRO SER SER VAL ARG SER GLY GLY SER ILE LEU SEQRES 9 B 330 GLY ASP LYS THR ARG MET ALA ARG LEU ALA VAL HIS PRO SEQRES 10 B 330 ASP ALA TYR VAL ARG PRO SER PRO SER SER GLY THR LEU SEQRES 11 B 330 GLY GLY VAL ALA LYS ALA THR ARG GLU THR ILE VAL LEU SEQRES 12 B 330 LEU GLU ALA ALA GLY PHE ASP VAL VAL LEU VAL GLU THR SEQRES 13 B 330 VAL GLY VAL GLY GLN SER GLU VAL THR VAL ALA ASP MET SEQRES 14 B 330 VAL ASP THR PHE VAL PHE LEU THR LEU ALA ARG THR GLY SEQRES 15 B 330 ASP GLN LEU GLN GLY ILE LYS LYS GLY VAL LEU GLU LEU SEQRES 16 B 330 ALA ASP ILE VAL VAL VAL ASN LYS ALA ASP GLY GLU HIS SEQRES 17 B 330 ALA VAL GLU ALA ARG LYS ALA ALA ARG GLU LEU ALA GLY SEQRES 18 B 330 ALA MET ARG LEU ILE TYR PRO ARG GLU THR LEU TRP ARG SEQRES 19 B 330 PRO PRO VAL LEU THR MET SER ALA LEU GLU GLY THR GLY SEQRES 20 B 330 VAL ALA GLU LEU TRP GLU THR VAL LEU LYS HIS ARG GLN SEQRES 21 B 330 VAL LEU ILE ASP ALA GLY GLU PHE GLU LYS ARG ARG ARG SEQRES 22 B 330 ASP GLN GLU VAL ASN TRP MET TRP THR MET VAL ARG ASP SEQRES 23 B 330 ALA VAL ILE ASP ARG VAL MET THR SER PRO GLY VAL ARG SEQRES 24 B 330 GLU ILE ARG ALA GLU VAL GLU ARG GLN VAL ARG GLU GLY SEQRES 25 B 330 GLU LEU THR ALA ALA LEU ALA ALA GLN ARG LEU LEU ASP SEQRES 26 B 330 ALA ALA GLU LEU ARG HET GDP A 327 28 HET GDP B 327 28 HET CL B 328 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 CL CL 1- FORMUL 6 HOH *107(H2 O) HELIX 1 1 THR A 4 GLY A 15 1 12 HELIX 2 2 ALA A 18 GLU A 28 1 11 HELIX 3 3 ARG A 31 MET A 46 1 16 HELIX 4 4 PRO A 47 ALA A 49 5 3 HELIX 5 5 GLY A 64 GLN A 79 1 16 HELIX 6 6 GLY A 127 ALA A 143 1 17 HELIX 7 7 SER A 158 ASP A 164 1 7 HELIX 8 8 VAL A 188 ALA A 192 5 5 HELIX 9 9 GLU A 203 ILE A 222 1 20 HELIX 10 10 GLY A 243 ALA A 261 1 19 HELIX 11 11 GLU A 263 THR A 290 1 28 HELIX 12 12 SER A 291 GLU A 307 1 17 HELIX 13 13 THR A 311 ALA A 323 1 13 HELIX 14 14 THR B 4 GLY B 15 1 12 HELIX 15 15 ALA B 18 SER B 29 1 12 HELIX 16 16 ARG B 31 MET B 46 1 16 HELIX 17 17 PRO B 47 ALA B 49 5 3 HELIX 18 18 GLY B 64 GLN B 79 1 16 HELIX 19 19 THR B 125 ALA B 143 1 19 HELIX 20 20 SER B 158 ASP B 164 1 7 HELIX 21 21 VAL B 188 ALA B 192 5 5 HELIX 22 22 ASP B 201 GLU B 203 5 3 HELIX 23 23 HIS B 204 TYR B 223 1 20 HELIX 24 24 GLY B 243 ALA B 261 1 19 HELIX 25 25 GLU B 263 THR B 290 1 28 HELIX 26 26 SER B 291 GLU B 307 1 17 HELIX 27 27 THR B 311 GLU B 324 1 14 SHEET 1 A 6 ALA A 107 LEU A 109 0 SHEET 2 A 6 VAL A 83 VAL A 88 1 N VAL A 83 O ALA A 107 SHEET 3 A 6 VAL A 147 THR A 152 1 O LEU A 149 N LEU A 86 SHEET 4 A 6 MET A 53 THR A 58 1 N ILE A 57 O VAL A 150 SHEET 5 A 6 THR A 168 THR A 177 1 O VAL A 170 N GLY A 56 SHEET 6 A 6 GLN A 180 GLN A 182 -1 O GLN A 180 N ARG A 176 SHEET 1 B 7 ALA A 107 LEU A 109 0 SHEET 2 B 7 VAL A 83 VAL A 88 1 N VAL A 83 O ALA A 107 SHEET 3 B 7 VAL A 147 THR A 152 1 O LEU A 149 N LEU A 86 SHEET 4 B 7 MET A 53 THR A 58 1 N ILE A 57 O VAL A 150 SHEET 5 B 7 THR A 168 THR A 177 1 O VAL A 170 N GLY A 56 SHEET 6 B 7 ILE A 194 VAL A 197 1 O VAL A 196 N PHE A 171 SHEET 7 B 7 VAL A 233 THR A 235 1 O LEU A 234 N VAL A 195 SHEET 1 C 6 ALA B 107 LEU B 109 0 SHEET 2 C 6 VAL B 83 VAL B 88 1 N VAL B 85 O LEU B 109 SHEET 3 C 6 VAL B 147 THR B 152 1 O LEU B 149 N LEU B 86 SHEET 4 C 6 MET B 53 THR B 58 1 N ILE B 57 O VAL B 150 SHEET 5 C 6 THR B 168 THR B 177 1 O LEU B 172 N THR B 58 SHEET 6 C 6 GLN B 180 GLN B 182 -1 O GLN B 180 N ARG B 176 SHEET 1 D 7 ALA B 107 LEU B 109 0 SHEET 2 D 7 VAL B 83 VAL B 88 1 N VAL B 85 O LEU B 109 SHEET 3 D 7 VAL B 147 THR B 152 1 O LEU B 149 N LEU B 86 SHEET 4 D 7 MET B 53 THR B 58 1 N ILE B 57 O VAL B 150 SHEET 5 D 7 THR B 168 THR B 177 1 O LEU B 172 N THR B 58 SHEET 6 D 7 ILE B 194 VAL B 197 1 O VAL B 196 N THR B 173 SHEET 7 D 7 VAL B 233 THR B 235 1 O LEU B 234 N VAL B 195 SITE 1 AC1 13 PRO A 61 GLY A 62 VAL A 63 GLY A 64 SITE 2 AC1 13 LYS A 65 SER A 66 THR A 67 ASN A 198 SITE 3 AC1 13 LYS A 199 ASP A 201 SER A 237 ALA A 238 SITE 4 AC1 13 LEU A 239 SITE 1 AC2 18 ARG A 176 GLN A 180 GLY B 62 VAL B 63 SITE 2 AC2 18 GLY B 64 LYS B 65 SER B 66 THR B 67 SITE 3 AC2 18 ASN B 198 LYS B 199 ASP B 201 SER B 237 SITE 4 AC2 18 ALA B 238 LEU B 239 HOH B 339 HOH B 358 SITE 5 AC2 18 HOH B 384 HOH B 385 SITE 1 AC3 2 PHE B 264 GLU B 265 CRYST1 42.380 106.430 134.040 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007460 0.00000