HEADER HYDROLASE/PEPTIDE 29-AUG-11 3TL0 TITLE STRUCTURE OF SHP2 N-SH2 DOMAIN IN COMPLEX WITH RLNPYAQLWHR PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SH2 DOMAIN, (UNP RESIDUES 1-106); COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RLNPYAQLWHR PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PEPTIDE WAS SYNTHESIZED WITH STANDARD FMOC.HBTU SOURCE 14 CHEMISTRY KEYWDS SH2 DOMAIN, PROTEIN-PROTEIN INTERACTIONS, PHOSPHORYLATED TYROSINE, KEYWDS 2 HYDROLASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,J.ZHANG,C.YUAN,R.L.HARD,I.H.PARK,C.LI,C.E.BELL,D.PEI REVDAT 4 30-OCT-24 3TL0 1 REMARK REVDAT 3 06-DEC-23 3TL0 1 REMARK REVDAT 2 13-SEP-23 3TL0 1 REMARK SEQADV LINK REVDAT 1 28-SEP-11 3TL0 0 JRNL AUTH Y.ZHANG,J.ZHANG,C.YUAN,R.L.HARD,I.H.PARK,C.LI,C.BELL,D.PEI JRNL TITL SIMULTANEOUS BINDING OF TWO PEPTIDYL LIGANDS BY A SRC JRNL TITL 2 HOMOLOGY 2 DOMAIN. JRNL REF BIOCHEMISTRY V. 50 7637 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21800896 JRNL DOI 10.1021/BI200439V REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0100 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 9354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 691 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 855 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1165 ; 2.096 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 104 ; 6.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;35.603 ;24.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 126 ;16.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.902 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 125 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 666 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 523 ; 1.525 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 2.721 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 332 ; 3.777 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 335 ; 5.982 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9880 5.0250 26.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.2078 REMARK 3 T33: 0.2022 T12: 0.0386 REMARK 3 T13: -0.0316 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 20.7418 L22: 0.9716 REMARK 3 L33: 9.2798 L12: -1.6130 REMARK 3 L13: -0.0162 L23: 1.7382 REMARK 3 S TENSOR REMARK 3 S11: -0.4294 S12: -0.0325 S13: -0.0407 REMARK 3 S21: 0.6072 S22: 0.6326 S23: -0.2301 REMARK 3 S31: 0.5029 S32: 0.6678 S33: -0.2032 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3000 1.8620 14.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.2587 REMARK 3 T33: 0.1634 T12: -0.1092 REMARK 3 T13: 0.0607 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 5.2533 L22: 16.8595 REMARK 3 L33: 1.1772 L12: 8.8569 REMARK 3 L13: -0.7583 L23: 1.1762 REMARK 3 S TENSOR REMARK 3 S11: -0.1880 S12: -0.1080 S13: -0.7102 REMARK 3 S21: -0.6276 S22: 0.4011 S23: -0.8129 REMARK 3 S31: -0.3519 S32: 0.4226 S33: -0.2131 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5340 8.3710 18.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.3045 T22: 0.1633 REMARK 3 T33: 0.1250 T12: -0.0751 REMARK 3 T13: -0.0365 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.6434 L22: 5.3847 REMARK 3 L33: 1.4641 L12: 1.5573 REMARK 3 L13: -0.0569 L23: 0.9533 REMARK 3 S TENSOR REMARK 3 S11: -0.3622 S12: 0.0916 S13: -0.1799 REMARK 3 S21: -0.5268 S22: 0.2150 S23: -0.0230 REMARK 3 S31: -0.3922 S32: 0.2182 S33: 0.1472 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7990 20.5460 27.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.1270 REMARK 3 T33: 0.2047 T12: -0.0274 REMARK 3 T13: -0.0538 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: -0.5987 L22: 4.0498 REMARK 3 L33: 1.3349 L12: 1.4346 REMARK 3 L13: -0.6823 L23: -0.0436 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: -0.0457 S13: 0.1284 REMARK 3 S21: -0.4337 S22: 0.1782 S23: 0.0332 REMARK 3 S31: -0.0276 S32: -0.0130 S33: -0.0909 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8610 16.1200 33.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.1641 REMARK 3 T33: 0.1900 T12: 0.0051 REMARK 3 T13: -0.0412 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.4350 L22: 6.5793 REMARK 3 L33: 3.2902 L12: -1.4212 REMARK 3 L13: 2.1249 L23: -2.1280 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.0810 S13: 0.0958 REMARK 3 S21: -0.0286 S22: 0.0267 S23: 0.3196 REMARK 3 S31: -0.0232 S32: 0.0277 S33: 0.0408 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4930 9.9130 31.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.1812 REMARK 3 T33: 0.1748 T12: -0.0350 REMARK 3 T13: -0.0302 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 7.8945 L22: 6.9362 REMARK 3 L33: 1.7426 L12: 4.0859 REMARK 3 L13: -0.5613 L23: 1.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.2392 S13: 0.0965 REMARK 3 S21: 0.0944 S22: -0.2857 S23: 0.2884 REMARK 3 S31: 0.1817 S32: 0.0320 S33: 0.2400 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9880 12.0380 24.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.2781 T22: 0.0143 REMARK 3 T33: 0.5740 T12: -0.1007 REMARK 3 T13: -0.2863 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 3.3869 L22: 6.1563 REMARK 3 L33: 58.8933 L12: -5.1618 REMARK 3 L13: 0.4221 L23: -19.7260 REMARK 3 S TENSOR REMARK 3 S11: -0.2297 S12: -0.5434 S13: 0.9901 REMARK 3 S21: -1.7061 S22: 0.3107 S23: 0.4299 REMARK 3 S31: 2.2294 S32: -2.1635 S33: -0.0810 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2240 13.0210 17.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.2718 REMARK 3 T33: 0.4160 T12: 0.0409 REMARK 3 T13: -0.2394 T23: 0.2294 REMARK 3 L TENSOR REMARK 3 L11: 3.5417 L22: 9.4488 REMARK 3 L33: 16.1165 L12: -6.2805 REMARK 3 L13: 5.4390 L23: 6.9989 REMARK 3 S TENSOR REMARK 3 S11: -0.1909 S12: -0.5631 S13: 0.0178 REMARK 3 S21: -0.6099 S22: -0.4362 S23: -0.0443 REMARK 3 S31: -0.6283 S32: -0.8830 S33: 0.6272 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9290 1.2550 25.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.1920 T22: 0.1151 REMARK 3 T33: 0.1843 T12: -0.0045 REMARK 3 T13: -0.0080 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 7.8262 L22: 5.1421 REMARK 3 L33: 5.8253 L12: 5.4551 REMARK 3 L13: -2.9738 L23: -0.7022 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: -0.2229 S13: -0.4217 REMARK 3 S21: 0.1972 S22: 0.0911 S23: 0.4030 REMARK 3 S31: 0.0155 S32: 0.2964 S33: 0.0926 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 46.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP OF CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1AYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M BIS-TRIS, 0.2 M REMARK 280 LI2SO4, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.66150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.37450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.37450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.49225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.37450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.37450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.83075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.37450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.37450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.49225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.37450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.37450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.83075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 CYS A 104 REMARK 465 ALA A 105 REMARK 465 ASP A 106 REMARK 465 ARG B 199 REMARK 465 HIS B 207 REMARK 465 ARG B 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 TRP B 206 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 206 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 76 OE2 GLU A 76 7556 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 76 CG GLU A 76 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 65 45.00 -106.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TKZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME SH2 DOMAIN DETERMINED IN A 1:2 COMPLEX WITH A REMARK 900 DIFFERENT PEPTIDE. DBREF 3TL0 A 1 106 UNP Q06124 PTN11_HUMAN 1 106 DBREF 3TL0 B 199 208 PDB 3TL0 3TL0 199 208 SEQADV 3TL0 GLY A -2 UNP Q06124 EXPRESSION TAG SEQADV 3TL0 SER A -1 UNP Q06124 EXPRESSION TAG SEQADV 3TL0 HIS A 0 UNP Q06124 EXPRESSION TAG SEQRES 1 A 109 GLY SER HIS MET THR SER ARG ARG TRP PHE HIS PRO ASN SEQRES 2 A 109 ILE THR GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG SEQRES 3 A 109 GLY VAL ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER SEQRES 4 A 109 ASN PRO GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY SEQRES 5 A 109 ALA VAL THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR SEQRES 6 A 109 TYR ASP LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA SEQRES 7 A 109 GLU LEU VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU SEQRES 8 A 109 LYS GLU LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO SEQRES 9 A 109 LEU ASN CYS ALA ASP SEQRES 1 B 10 ARG LEU ASN PTR ALA GLN LEU TRP HIS ARG MODRES 3TL0 PTR B 202 TYR O-PHOSPHOTYROSINE HET PTR B 202 16 HET SO4 A 107 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *23(H2 O) HELIX 1 1 THR A 12 GLY A 24 1 13 HELIX 2 2 THR A 73 HIS A 84 1 12 SHEET 1 A 4 ALA A 50 LYS A 55 0 SHEET 2 A 4 PHE A 41 ARG A 47 -1 N ARG A 47 O ALA A 50 SHEET 3 A 4 SER A 28 PRO A 33 -1 N SER A 28 O ARG A 46 SHEET 4 A 4 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 B 2 GLN A 57 ASN A 58 0 SHEET 2 B 2 TYR A 63 ASP A 64 -1 O ASP A 64 N GLN A 57 LINK C ASN B 201 N PTR B 202 1555 1555 1.35 LINK C PTR B 202 N ALA B 203 1555 1555 1.33 SITE 1 AC1 4 HIS A 84 HIS A 85 GLY A 86 GLN A 87 CRYST1 62.749 62.749 75.323 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013276 0.00000