HEADER OXIDOREDUCTASE 29-AUG-11 3TL3 TITLE STRUCTURE OF A SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE FROM TITLE 2 MYCOBACTERIUM ULCERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS; SOURCE 3 ORGANISM_TAXID: 362242; SOURCE 4 STRAIN: AGY99; SOURCE 5 GENE: MUL_0987; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3TL3 1 REMARK SEQADV REVDAT 3 08-NOV-17 3TL3 1 REMARK REVDAT 2 22-APR-15 3TL3 1 JRNL REVDAT 1 07-SEP-11 3TL3 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3389 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2159 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4624 ; 1.342 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5301 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 5.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;34.675 ;23.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;11.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 581 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3898 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0987 -19.9726 -24.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0407 REMARK 3 T33: 0.0202 T12: 0.0090 REMARK 3 T13: 0.0095 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.4565 L22: 1.6732 REMARK 3 L33: 1.5234 L12: -0.0675 REMARK 3 L13: -0.0287 L23: 0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0086 S13: 0.0214 REMARK 3 S21: -0.1840 S22: -0.0125 S23: -0.0732 REMARK 3 S31: 0.0442 S32: 0.0859 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8097 -6.9950 -21.9015 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0774 REMARK 3 T33: 0.0636 T12: 0.0161 REMARK 3 T13: -0.0018 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.2388 L22: 1.5012 REMARK 3 L33: 0.8077 L12: 1.3973 REMARK 3 L13: -0.1681 L23: 0.4376 REMARK 3 S TENSOR REMARK 3 S11: 0.1246 S12: 0.0849 S13: 0.0383 REMARK 3 S21: -0.0869 S22: -0.0382 S23: -0.0124 REMARK 3 S31: -0.0360 S32: 0.0047 S33: -0.0865 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0406 -6.2607 -12.6614 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0712 REMARK 3 T33: 0.0537 T12: 0.0023 REMARK 3 T13: 0.0021 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 3.2152 L22: 3.1830 REMARK 3 L33: 0.7572 L12: 2.5112 REMARK 3 L13: -0.5187 L23: -0.3580 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.0075 S13: 0.0755 REMARK 3 S21: -0.0083 S22: 0.0201 S23: -0.0975 REMARK 3 S31: -0.0869 S32: -0.0036 S33: -0.0582 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5248 -14.7573 -8.4096 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.0917 REMARK 3 T33: 0.0526 T12: -0.0024 REMARK 3 T13: 0.0054 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.3681 L22: 0.9243 REMARK 3 L33: 1.4853 L12: 0.1520 REMARK 3 L13: 0.6139 L23: -0.0650 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.1307 S13: -0.0163 REMARK 3 S21: -0.0348 S22: -0.0159 S23: -0.1342 REMARK 3 S31: -0.0218 S32: 0.2464 S33: 0.0403 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0486 25.0517 -17.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.0457 REMARK 3 T33: 0.0357 T12: -0.0067 REMARK 3 T13: -0.0126 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.4430 L22: 1.4668 REMARK 3 L33: 1.0962 L12: -0.0109 REMARK 3 L13: -0.0075 L23: -0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.0494 S13: 0.0613 REMARK 3 S21: -0.1488 S22: -0.0147 S23: 0.0258 REMARK 3 S31: -0.0750 S32: -0.0545 S33: 0.0487 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5853 13.3127 -18.3534 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0749 REMARK 3 T33: 0.0485 T12: 0.0096 REMARK 3 T13: 0.0232 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.0930 L22: 3.8193 REMARK 3 L33: 1.6194 L12: 2.8707 REMARK 3 L13: 1.0688 L23: 1.0375 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.1391 S13: -0.1140 REMARK 3 S21: -0.1030 S22: 0.0263 S23: -0.1233 REMARK 3 S31: -0.0427 S32: 0.0652 S33: -0.0666 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 136 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5419 9.3794 -10.5983 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0471 REMARK 3 T33: 0.0605 T12: -0.0016 REMARK 3 T13: 0.0066 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.2616 L22: 1.8205 REMARK 3 L33: 1.5427 L12: 0.6692 REMARK 3 L13: 0.7828 L23: 0.8038 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0487 S13: -0.0279 REMARK 3 S21: -0.0798 S22: -0.0736 S23: 0.2250 REMARK 3 S31: 0.0928 S32: -0.0881 S33: 0.0445 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 175 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8288 15.7781 -4.5852 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0713 REMARK 3 T33: 0.0447 T12: -0.0031 REMARK 3 T13: -0.0006 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7176 L22: 0.6268 REMARK 3 L33: 1.1285 L12: 0.0149 REMARK 3 L13: -0.2936 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0834 S13: -0.0399 REMARK 3 S21: -0.0622 S22: -0.0057 S23: 0.0565 REMARK 3 S31: -0.0017 S32: -0.1516 S33: 0.0119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3TL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38385 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1UAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.7 MG/ML MYULA.00554.A.A1 PS00974. REMARK 280 0.1 M MMT BUFFER, PH 8.0, 25% PEG1500, CRYOPROTECTION 20% REMARK 280 ETHYLENE GLYCOL , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.62250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.77650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.62250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.77650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 132 REMARK 465 PRO A 133 REMARK 465 ALA A 149 REMARK 465 PHE A 150 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 LEU A 200 REMARK 465 ARG A 249 REMARK 465 MET A 250 REMARK 465 ALA A 251 REMARK 465 PRO A 252 REMARK 465 ARG A 253 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ILE B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 91 REMARK 465 LEU B 92 REMARK 465 SER B 93 REMARK 465 ARG B 94 REMARK 465 ASP B 95 REMARK 465 GLY B 96 REMARK 465 VAL B 97 REMARK 465 PHE B 98 REMARK 465 GLY B 132 REMARK 465 PRO B 133 REMARK 465 ARG B 249 REMARK 465 MET B 250 REMARK 465 ALA B 251 REMARK 465 PRO B 252 REMARK 465 ARG B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 92 CG CD1 CD2 REMARK 470 SER A 93 OG REMARK 470 LEU A 100 CG CD1 CD2 REMARK 470 ASN A 134 CG OD1 ND2 REMARK 470 VAL A 147 CG1 CG2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 SER A 207 OG REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ASN B 134 CG OD1 ND2 REMARK 470 VAL B 147 CG1 CG2 REMARK 470 ASP B 151 CG OD1 OD2 REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 56 OG1 THR B 58 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 214 CG HIS A 214 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 146 130.79 26.01 REMARK 500 HIS A 214 122.02 -174.36 REMARK 500 ASP A 245 14.08 -154.94 REMARK 500 ASP B 245 17.05 -152.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 5 ALA B 6 -36.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYULA.00554.A RELATED DB: TARGETDB DBREF 3TL3 A 1 253 UNP A0PMN1 A0PMN1_MYCUA 1 253 DBREF 3TL3 B 1 253 UNP A0PMN1 A0PMN1_MYCUA 1 253 SEQADV 3TL3 GLY A -3 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 PRO A -2 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 GLY A -1 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 SER A 0 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 GLY B -3 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 PRO B -2 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 GLY B -1 UNP A0PMN1 EXPRESSION TAG SEQADV 3TL3 SER B 0 UNP A0PMN1 EXPRESSION TAG SEQRES 1 A 257 GLY PRO GLY SER MET GLU ILE ARG ASP ALA VAL ALA VAL SEQRES 2 A 257 VAL THR GLY GLY ALA SER GLY LEU GLY LEU ALA THR THR SEQRES 3 A 257 LYS ARG LEU LEU ASP ALA GLY ALA GLN VAL VAL VAL LEU SEQRES 4 A 257 ASP ILE ARG GLY GLU ASP VAL VAL ALA ASP LEU GLY ASP SEQRES 5 A 257 ARG ALA ARG PHE ALA ALA ALA ASP VAL THR ASP GLU ALA SEQRES 6 A 257 ALA VAL ALA SER ALA LEU ASP LEU ALA GLU THR MET GLY SEQRES 7 A 257 THR LEU ARG ILE VAL VAL ASN CYS ALA GLY THR GLY ASN SEQRES 8 A 257 ALA ILE ARG VAL LEU SER ARG ASP GLY VAL PHE SER LEU SEQRES 9 A 257 ALA ALA PHE ARG LYS ILE VAL ASP ILE ASN LEU VAL GLY SEQRES 10 A 257 SER PHE ASN VAL LEU ARG LEU ALA ALA GLU ARG ILE ALA SEQRES 11 A 257 LYS THR GLU PRO VAL GLY PRO ASN ALA GLU GLU ARG GLY SEQRES 12 A 257 VAL ILE ILE ASN THR ALA SER VAL ALA ALA PHE ASP GLY SEQRES 13 A 257 GLN ILE GLY GLN ALA ALA TYR SER ALA SER LYS GLY GLY SEQRES 14 A 257 VAL VAL GLY MET THR LEU PRO ILE ALA ARG ASP LEU ALA SEQRES 15 A 257 SER HIS ARG ILE ARG VAL MET THR ILE ALA PRO GLY LEU SEQRES 16 A 257 PHE ASP THR PRO LEU LEU ALA SER LEU PRO GLU GLU ALA SEQRES 17 A 257 ARG ALA SER LEU GLY LYS GLN VAL PRO HIS PRO SER ARG SEQRES 18 A 257 LEU GLY ASN PRO ASP GLU TYR GLY ALA LEU ALA VAL HIS SEQRES 19 A 257 ILE ILE GLU ASN PRO MET LEU ASN GLY GLU VAL ILE ARG SEQRES 20 A 257 LEU ASP GLY ALA ILE ARG MET ALA PRO ARG SEQRES 1 B 257 GLY PRO GLY SER MET GLU ILE ARG ASP ALA VAL ALA VAL SEQRES 2 B 257 VAL THR GLY GLY ALA SER GLY LEU GLY LEU ALA THR THR SEQRES 3 B 257 LYS ARG LEU LEU ASP ALA GLY ALA GLN VAL VAL VAL LEU SEQRES 4 B 257 ASP ILE ARG GLY GLU ASP VAL VAL ALA ASP LEU GLY ASP SEQRES 5 B 257 ARG ALA ARG PHE ALA ALA ALA ASP VAL THR ASP GLU ALA SEQRES 6 B 257 ALA VAL ALA SER ALA LEU ASP LEU ALA GLU THR MET GLY SEQRES 7 B 257 THR LEU ARG ILE VAL VAL ASN CYS ALA GLY THR GLY ASN SEQRES 8 B 257 ALA ILE ARG VAL LEU SER ARG ASP GLY VAL PHE SER LEU SEQRES 9 B 257 ALA ALA PHE ARG LYS ILE VAL ASP ILE ASN LEU VAL GLY SEQRES 10 B 257 SER PHE ASN VAL LEU ARG LEU ALA ALA GLU ARG ILE ALA SEQRES 11 B 257 LYS THR GLU PRO VAL GLY PRO ASN ALA GLU GLU ARG GLY SEQRES 12 B 257 VAL ILE ILE ASN THR ALA SER VAL ALA ALA PHE ASP GLY SEQRES 13 B 257 GLN ILE GLY GLN ALA ALA TYR SER ALA SER LYS GLY GLY SEQRES 14 B 257 VAL VAL GLY MET THR LEU PRO ILE ALA ARG ASP LEU ALA SEQRES 15 B 257 SER HIS ARG ILE ARG VAL MET THR ILE ALA PRO GLY LEU SEQRES 16 B 257 PHE ASP THR PRO LEU LEU ALA SER LEU PRO GLU GLU ALA SEQRES 17 B 257 ARG ALA SER LEU GLY LYS GLN VAL PRO HIS PRO SER ARG SEQRES 18 B 257 LEU GLY ASN PRO ASP GLU TYR GLY ALA LEU ALA VAL HIS SEQRES 19 B 257 ILE ILE GLU ASN PRO MET LEU ASN GLY GLU VAL ILE ARG SEQRES 20 B 257 LEU ASP GLY ALA ILE ARG MET ALA PRO ARG HET NA B 254 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *280(H2 O) HELIX 1 1 SER A 15 GLY A 29 1 15 HELIX 2 2 GLY A 39 LEU A 46 1 8 HELIX 3 3 ASP A 59 GLY A 74 1 16 HELIX 4 4 ALA A 83 THR A 85 5 3 HELIX 5 5 GLY A 86 ASP A 95 1 10 HELIX 6 6 SER A 99 ALA A 126 1 28 HELIX 7 7 GLY A 152 ALA A 178 1 27 HELIX 8 8 GLU A 202 GLN A 211 1 10 HELIX 9 9 ASN A 220 ASN A 234 1 15 HELIX 10 10 SER B 15 ALA B 28 1 14 HELIX 11 11 GLY B 39 LEU B 46 1 8 HELIX 12 12 ASP B 59 GLY B 74 1 16 HELIX 13 13 LEU B 100 LEU B 111 1 12 HELIX 14 14 LEU B 111 ALA B 126 1 16 HELIX 15 15 GLY B 155 ALA B 178 1 24 HELIX 16 16 THR B 194 ALA B 198 5 5 HELIX 17 17 PRO B 201 GLN B 211 1 11 HELIX 18 18 ASN B 220 ASN B 234 1 15 SHEET 1 A 7 ALA A 50 ALA A 54 0 SHEET 2 A 7 GLN A 31 ASP A 36 1 N VAL A 34 O ARG A 51 SHEET 3 A 7 VAL A 7 THR A 11 1 N ALA A 8 O VAL A 33 SHEET 4 A 7 LEU A 76 ASN A 81 1 O VAL A 80 N VAL A 9 SHEET 5 A 7 GLY A 139 THR A 144 1 O ILE A 142 N VAL A 79 SHEET 6 A 7 ILE A 182 PRO A 189 1 O ILE A 187 N ASN A 143 SHEET 7 A 7 VAL A 241 LEU A 244 1 O ILE A 242 N THR A 186 SHEET 1 B 7 ALA B 50 ALA B 54 0 SHEET 2 B 7 GLN B 31 ASP B 36 1 N VAL B 34 O ARG B 51 SHEET 3 B 7 VAL B 7 THR B 11 1 N ALA B 8 O VAL B 33 SHEET 4 B 7 LEU B 76 ASN B 81 1 O VAL B 80 N VAL B 9 SHEET 5 B 7 GLY B 139 THR B 144 1 O ILE B 142 N ASN B 81 SHEET 6 B 7 ILE B 182 PRO B 189 1 O MET B 185 N ASN B 143 SHEET 7 B 7 VAL B 241 LEU B 244 1 O ILE B 242 N THR B 186 CISPEP 1 HIS A 214 PRO A 215 0 -0.34 CISPEP 2 HIS B 214 PRO B 215 0 -0.18 SITE 1 AC1 6 GLU A 240 VAL A 241 GLU B 240 VAL B 241 SITE 2 AC1 6 HOH B 356 HOH B 358 CRYST1 54.946 73.245 109.553 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009128 0.00000