HEADER OXYGEN TRANSPORT 31-AUG-11 3TM3 TITLE WILD-TYPE HEMOGLOBIN FROM VITREOSCILLA STERCORARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SOLUBLE CYTOCHROME O; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITREOSCILLA STERCORARIA; SOURCE 3 ORGANISM_TAXID: 61; SOURCE 4 GENE: VHB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDH88 KEYWDS GLOBIN 8-HELIX FOLD, OXYGEN STORAGE, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.RATAKONDA,A.ANAND,K.DIKSHIT,B.C.STARK,A.J.HOWARD REVDAT 2 28-FEB-24 3TM3 1 REMARK REVDAT 1 16-APR-14 3TM3 0 JRNL AUTH S.RATAKONDA,A.ANAND,K.DIKSHIT,B.C.STARK,A.J.HOWARD JRNL TITL CRYSTALLOGRAPHIC STRUCTURE DETERMINATION OF B10 MUTANTS OF JRNL TITL 2 VITREOSCILLA HEMOGLOBIN: ROLE OF TYR29 (B10) IN THE JRNL TITL 3 STRUCTURE OF THE LIGAND-BINDING SITE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 215 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23519792 JRNL DOI 10.1107/S1744309112044818 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9362 - 3.8896 0.99 1370 152 0.1707 0.2241 REMARK 3 2 3.8896 - 3.0883 1.00 1319 147 0.1607 0.1700 REMARK 3 3 3.0883 - 2.6982 1.00 1296 144 0.1584 0.1832 REMARK 3 4 2.6982 - 2.4516 1.00 1309 146 0.1519 0.1672 REMARK 3 5 2.4516 - 2.2760 1.00 1277 142 0.1566 0.1902 REMARK 3 6 2.2760 - 2.1418 1.00 1270 141 0.1588 0.1998 REMARK 3 7 2.1418 - 2.0346 1.00 1297 144 0.1704 0.2281 REMARK 3 8 2.0346 - 1.9461 1.00 1253 140 0.1866 0.2172 REMARK 3 9 1.9461 - 1.8711 0.99 1264 138 0.1988 0.1995 REMARK 3 10 1.8711 - 1.8066 1.00 1292 141 0.2279 0.3105 REMARK 3 11 1.8066 - 1.7501 0.99 1252 140 0.2644 0.3151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1186 REMARK 3 ANGLE : 1.087 1628 REMARK 3 CHIRALITY : 0.032 190 REMARK 3 PLANARITY : 0.005 201 REMARK 3 DIHEDRAL : 14.440 424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.9560 4.9883 58.8293 REMARK 3 T TENSOR REMARK 3 T11: 0.5730 T22: 0.0767 REMARK 3 T33: 0.2745 T12: -0.0047 REMARK 3 T13: 0.1145 T23: 0.1516 REMARK 3 L TENSOR REMARK 3 L11: 0.1179 L22: 0.1460 REMARK 3 L33: 0.4896 L12: -0.0872 REMARK 3 L13: -0.1617 L23: -0.0202 REMARK 3 S TENSOR REMARK 3 S11: -0.2640 S12: 0.0603 S13: -0.1613 REMARK 3 S21: -0.1286 S22: -0.0048 S23: 0.0249 REMARK 3 S31: 0.4706 S32: -0.0552 S33: -0.7325 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.6858 16.0497 50.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1706 REMARK 3 T33: 0.2341 T12: 0.0483 REMARK 3 T13: 0.0219 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.0095 L22: 0.0176 REMARK 3 L33: 0.0279 L12: -0.0158 REMARK 3 L13: 0.0134 L23: -0.0287 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: 0.0939 S13: 0.0319 REMARK 3 S21: -0.0543 S22: 0.0497 S23: -0.2589 REMARK 3 S31: 0.2743 S32: 0.0700 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 43) REMARK 3 ORIGIN FOR THE GROUP (A): 100.8318 24.2431 41.3948 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.2510 REMARK 3 T33: 0.2440 T12: 0.0118 REMARK 3 T13: 0.0090 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.0043 L22: 0.0284 REMARK 3 L33: 0.0192 L12: 0.0117 REMARK 3 L13: -0.0060 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0234 S13: 0.2639 REMARK 3 S21: 0.1123 S22: -0.2011 S23: -0.3071 REMARK 3 S31: -0.1578 S32: 0.2040 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 55) REMARK 3 ORIGIN FOR THE GROUP (A): 102.7659 29.1891 49.7599 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.5602 REMARK 3 T33: 0.5217 T12: -0.1922 REMARK 3 T13: 0.0972 T23: 0.1055 REMARK 3 L TENSOR REMARK 3 L11: -0.0024 L22: -0.0016 REMARK 3 L33: -0.0010 L12: 0.0018 REMARK 3 L13: -0.0003 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.1811 S12: 0.2514 S13: 0.4157 REMARK 3 S21: -0.3423 S22: 0.3992 S23: -0.2340 REMARK 3 S31: -0.5696 S32: 0.0732 S33: 0.0150 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 67) REMARK 3 ORIGIN FOR THE GROUP (A): 89.1013 15.9190 57.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1620 REMARK 3 T33: 0.2132 T12: 0.0017 REMARK 3 T13: -0.0150 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.0266 L22: 0.0541 REMARK 3 L33: 0.0198 L12: -0.0174 REMARK 3 L13: -0.0114 L23: 0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: -0.0677 S13: -0.1912 REMARK 3 S21: 0.4319 S22: 0.0648 S23: -0.0244 REMARK 3 S31: -0.0766 S32: 0.1306 S33: 0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 90) REMARK 3 ORIGIN FOR THE GROUP (A): 83.2573 23.5843 51.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.2889 REMARK 3 T33: 0.1689 T12: 0.0410 REMARK 3 T13: 0.0200 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.0999 L22: 0.1280 REMARK 3 L33: 0.1633 L12: -0.1190 REMARK 3 L13: -0.1383 L23: 0.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: 0.1169 S13: -0.2396 REMARK 3 S21: 0.1350 S22: 0.0394 S23: 0.0567 REMARK 3 S31: -0.1308 S32: -0.2912 S33: -0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 114) REMARK 3 ORIGIN FOR THE GROUP (A): 96.8104 9.6746 48.7800 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.1664 REMARK 3 T33: 0.2389 T12: -0.0096 REMARK 3 T13: 0.0467 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1143 L22: 0.1026 REMARK 3 L33: 0.1044 L12: 0.0700 REMARK 3 L13: -0.0527 L23: 0.0402 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: 0.1424 S13: -0.2676 REMARK 3 S21: -0.2517 S22: -0.0171 S23: -0.2052 REMARK 3 S31: 0.2517 S32: 0.0661 S33: -0.0057 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 146) REMARK 3 ORIGIN FOR THE GROUP (A): 84.2213 15.8604 46.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.2294 REMARK 3 T33: 0.2105 T12: -0.1230 REMARK 3 T13: -0.0038 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.1343 L22: 0.0252 REMARK 3 L33: 1.4870 L12: 0.0605 REMARK 3 L13: -0.4381 L23: -0.1934 REMARK 3 S TENSOR REMARK 3 S11: -0.0982 S12: 0.1107 S13: -0.1339 REMARK 3 S21: -0.1622 S22: 0.2580 S23: 0.3063 REMARK 3 S31: 0.4376 S32: -0.7596 S33: -0.0355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI111 - SAGITTAL SECOND CRYSTAL REMARK 200 OPTICS : SI(111) MONOCHROMATOR WITH REMARK 200 SAGITTALLY BENT SECOND CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.050 REMARK 200 R MERGE (I) : 0.05480 REMARK 200 R SYM (I) : 0.05480 REMARK 200 FOR THE DATA SET : 10.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.04 REMARK 200 R MERGE FOR SHELL (I) : 0.52880 REMARK 200 R SYM FOR SHELL (I) : 0.52880 REMARK 200 FOR SHELL : 1.237 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MG/ML PROTEIN IN 1.6M (NH4)2SO4, REMARK 280 0.05M NAH2P2O7, 3% ETHYLENE GLYCOL, STREAK-SEEDED, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.50750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 20.50750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.57800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.50650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.57800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.50650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.50750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.57800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.50650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 20.50750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.57800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.50650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 150.31200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.53750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 370 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 371 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 47 REMARK 465 GLN A 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 100 O HOH A 384 2.04 REMARK 500 O HOH A 364 O HOH A 372 2.17 REMARK 500 O2D HEM A 201 O HOH A 363 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 379 O HOH A 392 8557 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 54 93.07 -52.02 REMARK 500 VAL A 145 51.08 -110.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 HEM A 201 NA 98.7 REMARK 620 3 HEM A 201 NB 92.9 89.5 REMARK 620 4 HEM A 201 NC 94.2 167.1 89.0 REMARK 620 5 HEM A 201 ND 98.5 89.9 168.5 89.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VHB RELATED DB: PDB REMARK 900 THE WILD-TYPE VITREOSCILLA HEMOGLOBIN STRUCTURE COMPLEXED WITH REMARK 900 AZIDE, AS DETERMINED BY TARRICONE ET AL. REMARK 900 RELATED ID: 3TLD RELATED DB: PDB REMARK 900 Y29F MUTANT OF THIS PROTEIN. REMARK 900 RELATED ID: 3TM9 RELATED DB: PDB DBREF 3TM3 A 1 146 UNP P04252 BAHG_VITST 1 146 SEQRES 1 A 146 MET LEU ASP GLN GLN THR ILE ASN ILE ILE LYS ALA THR SEQRES 2 A 146 VAL PRO VAL LEU LYS GLU HIS GLY VAL THR ILE THR THR SEQRES 3 A 146 THR PHE TYR LYS ASN LEU PHE ALA LYS HIS PRO GLU VAL SEQRES 4 A 146 ARG PRO LEU PHE ASP MET GLY ARG GLN GLU SER LEU GLU SEQRES 5 A 146 GLN PRO LYS ALA LEU ALA MET THR VAL LEU ALA ALA ALA SEQRES 6 A 146 GLN ASN ILE GLU ASN LEU PRO ALA ILE LEU PRO ALA VAL SEQRES 7 A 146 LYS LYS ILE ALA VAL LYS HIS CYS GLN ALA GLY VAL ALA SEQRES 8 A 146 ALA ALA HIS TYR PRO ILE VAL GLY GLN GLU LEU LEU GLY SEQRES 9 A 146 ALA ILE LYS GLU VAL LEU GLY ASP ALA ALA THR ASP ASP SEQRES 10 A 146 ILE LEU ASP ALA TRP GLY LYS ALA TYR GLY VAL ILE ALA SEQRES 11 A 146 ASP VAL PHE ILE GLN VAL GLU ALA ASP LEU TYR ALA GLN SEQRES 12 A 146 ALA VAL GLU HET HEM A 201 73 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *92(H2 O) HELIX 1 1 ASP A 3 HIS A 20 1 18 HELIX 2 2 HIS A 20 HIS A 36 1 17 HELIX 3 3 PRO A 37 ASP A 44 5 8 HELIX 4 4 ALA A 56 ASN A 67 1 12 HELIX 5 5 ASN A 70 ALA A 73 5 4 HELIX 6 6 ILE A 74 GLY A 89 1 16 HELIX 7 7 ALA A 91 ALA A 93 5 3 HELIX 8 8 HIS A 94 GLY A 111 1 18 HELIX 9 9 ASP A 112 ALA A 114 5 3 HELIX 10 10 THR A 115 VAL A 145 1 31 LINK NE2 HIS A 85 FE HEM A 201 1555 1555 2.26 SITE 1 AC1 20 GLU A 38 LEU A 42 PHE A 43 GLU A 52 SITE 2 AC1 20 LEU A 57 THR A 60 VAL A 61 ILE A 81 SITE 3 AC1 20 LYS A 84 HIS A 85 VAL A 90 HIS A 94 SITE 4 AC1 20 TYR A 95 VAL A 98 PHE A 133 HOH A 301 SITE 5 AC1 20 HOH A 318 HOH A 351 HOH A 363 HOH A 369 CRYST1 75.156 99.013 41.015 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024381 0.00000