HEADER TRANSFERASE 31-AUG-11 3TM4 TITLE CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH S- TITLE 2 ADENOSYLMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE N2-)-METHYLTRANSFERASE TRM14; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PF1002; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS ROSSMANN FOLD, METHYLTRANSFERASE, THUMP DOMAIN, TRNA KEYWDS 2 METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FISLAGE,M.ROOVERS,I.TUSZYNSKA,J.M.BUJNICKI,L.DROOGMANS,W.VERSEES REVDAT 4 13-SEP-23 3TM4 1 REMARK SEQADV REVDAT 3 03-OCT-12 3TM4 1 JRNL REVDAT 2 09-MAY-12 3TM4 1 COMPND REVDAT 1 14-MAR-12 3TM4 0 JRNL AUTH M.FISLAGE,M.ROOVERS,I.TUSZYNSKA,J.M.BUJNICKI,L.DROOGMANS, JRNL AUTH 2 W.VERSEES JRNL TITL CRYSTAL STRUCTURES OF THE TRNA:M2G6 METHYLTRANSFERASE JRNL TITL 2 TRM14/TRMN FROM TWO DOMAINS OF LIFE. JRNL REF NUCLEIC ACIDS RES. V. 40 5149 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22362751 JRNL DOI 10.1093/NAR/GKS163 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.10000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : 3.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5982 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8082 ; 1.400 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 752 ; 7.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;36.013 ;23.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1106 ;15.022 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.189 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 924 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4408 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3653 ; 1.607 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5893 ; 2.664 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2329 ; 4.178 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2175 ; 6.534 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.930 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.070 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00150 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS (DCCM) IN (+ REMARK 200 --+) GEOMETRY REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-ACETATE, 32% PEG 4000, 15% REMARK 280 GLYCEROL, CRYSTAL WAS SOAKED IN CRYSTALLIZATION SOLUTION REMARK 280 CONTAINING 1 MM S-ADENOSYLMETHIONINE, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.58500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO IDENTICAL MOLECULES REMARK 300 CONNECTED BY NCS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 298 REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 GLY A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 LEU B 298 REMARK 465 LYS B 299 REMARK 465 ILE B 300 REMARK 465 GLY B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 31 CD OE1 NE2 REMARK 480 GLU A 96 CD OE1 OE2 REMARK 480 LYS A 190 CD CE NZ REMARK 480 ARG A 251 CZ NH1 NH2 REMARK 480 LYS A 252 CG CD CE NZ REMARK 480 MET A 305 SD CE REMARK 480 GLN B 31 CD OE1 NE2 REMARK 480 LYS B 92 CD CE NZ REMARK 480 GLU B 94 CD OE1 OE2 REMARK 480 GLU B 96 CG CD OE1 OE2 REMARK 480 GLU B 97 CG CD OE1 OE2 REMARK 480 GLU B 148 CD OE1 OE2 REMARK 480 SER B 304 CB OG REMARK 480 MET B 305 SD CE REMARK 480 GLU B 341 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 650 O HOH A 651 1.90 REMARK 500 O HOH A 585 O HOH A 637 2.00 REMARK 500 NH2 ARG A 168 O HOH A 610 2.02 REMARK 500 OD1 ASP B 130 O HOH B 577 2.07 REMARK 500 OE1 GLU A 243 O HOH A 689 2.12 REMARK 500 OD1 ASP B 174 O HOH B 631 2.12 REMARK 500 O HOH B 589 O HOH B 590 2.12 REMARK 500 O HOH A 541 O HOH A 684 2.13 REMARK 500 O HOH B 669 O HOH B 670 2.14 REMARK 500 O HOH A 651 O HOH A 652 2.16 REMARK 500 NH2 ARG B 168 O HOH B 633 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 117 -0.23 -55.50 REMARK 500 LYS A 173 -118.29 47.73 REMARK 500 MET A 305 -37.68 62.60 REMARK 500 LYS A 323 -92.54 -115.07 REMARK 500 GLU B 48 151.47 -49.98 REMARK 500 SER B 95 -70.01 -34.41 REMARK 500 VAL B 117 11.58 -66.14 REMARK 500 ASP B 130 75.17 -103.87 REMARK 500 ASP B 130 76.43 -104.92 REMARK 500 LYS B 173 -116.69 50.70 REMARK 500 LYS B 323 -94.85 -118.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 354 GLY B 355 -147.28 REMARK 500 HIS B 369 HIS B 370 -148.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH REMARK 900 S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 3TMA RELATED DB: PDB REMARK 900 RELATED ID: 3TM5 RELATED DB: PDB DBREF 3TM4 A 1 365 UNP Q8U248 Q8U248_PYRFU 1 365 DBREF 3TM4 B 1 365 UNP Q8U248 Q8U248_PYRFU 1 365 SEQADV 3TM4 LEU A 366 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 GLU A 367 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS A 368 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS A 369 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS A 370 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS A 371 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS A 372 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS A 373 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 LEU B 366 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 GLU B 367 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS B 368 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS B 369 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS B 370 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS B 371 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS B 372 UNP Q8U248 EXPRESSION TAG SEQADV 3TM4 HIS B 373 UNP Q8U248 EXPRESSION TAG SEQRES 1 A 373 MET LYS PHE LEU LEU THR THR ALA GLN GLY ILE GLU ASP SEQRES 2 A 373 ILE ALA LYS ARG GLU VAL SER LEU LEU LEU LYS LYS LEU SEQRES 3 A 373 GLY ILE SER PHE GLN ILE GLU GLU LYS PRO LEU GLY ILE SEQRES 4 A 373 GLU GLY ARG LEU LEU LEU GLU ALA GLU LYS ALA TYR TYR SEQRES 5 A 373 VAL ASP GLU LYS GLY ARG LYS ARG GLU LEU SER ILE SER SEQRES 6 A 373 THR TYR LEU ASN GLU ASN SER ARG LEU LEU HIS ARG VAL SEQRES 7 A 373 ILE ILE GLU ILE ALA SER GLU LYS PHE ASN GLY ILE GLU SEQRES 8 A 373 LYS ASP GLU SER GLU GLU ALA LEU LYS ARG ILE LYS ASP SEQRES 9 A 373 PHE VAL SER SER LEU PRO VAL GLU GLN PHE VAL LYS VAL SEQRES 10 A 373 SER GLU THR PHE ALA VAL ARG SER PHE ARG LYS GLY ASP SEQRES 11 A 373 HIS ASN ILE THR SER ILE ASP ILE ALA ARG THR VAL GLY SEQRES 12 A 373 GLU ALA ILE PHE GLU ARG LEU SER ARG PHE GLY THR PRO SEQRES 13 A 373 LEU VAL ASN LEU ASP HIS PRO ALA VAL ILE PHE ARG ALA SEQRES 14 A 373 GLU LEU ILE LYS ASP VAL PHE PHE LEU GLY ILE ASP THR SEQRES 15 A 373 THR GLY ASP SER SER LEU HIS LYS ARG PRO TRP ARG VAL SEQRES 16 A 373 TYR ASP HIS PRO ALA HIS LEU LYS ALA SER ILE ALA ASN SEQRES 17 A 373 ALA MET ILE GLU LEU ALA GLU LEU ASP GLY GLY SER VAL SEQRES 18 A 373 LEU ASP PRO MET CYS GLY SER GLY THR ILE LEU ILE GLU SEQRES 19 A 373 LEU ALA LEU ARG ARG TYR SER GLY GLU ILE ILE GLY ILE SEQRES 20 A 373 GLU LYS TYR ARG LYS HIS LEU ILE GLY ALA GLU MET ASN SEQRES 21 A 373 ALA LEU ALA ALA GLY VAL LEU ASP LYS ILE LYS PHE ILE SEQRES 22 A 373 GLN GLY ASP ALA THR GLN LEU SER GLN TYR VAL ASP SER SEQRES 23 A 373 VAL ASP PHE ALA ILE SER ASN LEU PRO TYR GLY LEU LYS SEQRES 24 A 373 ILE GLY LYS LYS SER MET ILE PRO ASP LEU TYR MET LYS SEQRES 25 A 373 PHE PHE ASN GLU LEU ALA LYS VAL LEU GLU LYS ARG GLY SEQRES 26 A 373 VAL PHE ILE THR THR GLU LYS LYS ALA ILE GLU GLU ALA SEQRES 27 A 373 ILE ALA GLU ASN GLY PHE GLU ILE ILE HIS HIS ARG VAL SEQRES 28 A 373 ILE GLY HIS GLY GLY LEU MET VAL HIS LEU TYR VAL VAL SEQRES 29 A 373 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 373 MET LYS PHE LEU LEU THR THR ALA GLN GLY ILE GLU ASP SEQRES 2 B 373 ILE ALA LYS ARG GLU VAL SER LEU LEU LEU LYS LYS LEU SEQRES 3 B 373 GLY ILE SER PHE GLN ILE GLU GLU LYS PRO LEU GLY ILE SEQRES 4 B 373 GLU GLY ARG LEU LEU LEU GLU ALA GLU LYS ALA TYR TYR SEQRES 5 B 373 VAL ASP GLU LYS GLY ARG LYS ARG GLU LEU SER ILE SER SEQRES 6 B 373 THR TYR LEU ASN GLU ASN SER ARG LEU LEU HIS ARG VAL SEQRES 7 B 373 ILE ILE GLU ILE ALA SER GLU LYS PHE ASN GLY ILE GLU SEQRES 8 B 373 LYS ASP GLU SER GLU GLU ALA LEU LYS ARG ILE LYS ASP SEQRES 9 B 373 PHE VAL SER SER LEU PRO VAL GLU GLN PHE VAL LYS VAL SEQRES 10 B 373 SER GLU THR PHE ALA VAL ARG SER PHE ARG LYS GLY ASP SEQRES 11 B 373 HIS ASN ILE THR SER ILE ASP ILE ALA ARG THR VAL GLY SEQRES 12 B 373 GLU ALA ILE PHE GLU ARG LEU SER ARG PHE GLY THR PRO SEQRES 13 B 373 LEU VAL ASN LEU ASP HIS PRO ALA VAL ILE PHE ARG ALA SEQRES 14 B 373 GLU LEU ILE LYS ASP VAL PHE PHE LEU GLY ILE ASP THR SEQRES 15 B 373 THR GLY ASP SER SER LEU HIS LYS ARG PRO TRP ARG VAL SEQRES 16 B 373 TYR ASP HIS PRO ALA HIS LEU LYS ALA SER ILE ALA ASN SEQRES 17 B 373 ALA MET ILE GLU LEU ALA GLU LEU ASP GLY GLY SER VAL SEQRES 18 B 373 LEU ASP PRO MET CYS GLY SER GLY THR ILE LEU ILE GLU SEQRES 19 B 373 LEU ALA LEU ARG ARG TYR SER GLY GLU ILE ILE GLY ILE SEQRES 20 B 373 GLU LYS TYR ARG LYS HIS LEU ILE GLY ALA GLU MET ASN SEQRES 21 B 373 ALA LEU ALA ALA GLY VAL LEU ASP LYS ILE LYS PHE ILE SEQRES 22 B 373 GLN GLY ASP ALA THR GLN LEU SER GLN TYR VAL ASP SER SEQRES 23 B 373 VAL ASP PHE ALA ILE SER ASN LEU PRO TYR GLY LEU LYS SEQRES 24 B 373 ILE GLY LYS LYS SER MET ILE PRO ASP LEU TYR MET LYS SEQRES 25 B 373 PHE PHE ASN GLU LEU ALA LYS VAL LEU GLU LYS ARG GLY SEQRES 26 B 373 VAL PHE ILE THR THR GLU LYS LYS ALA ILE GLU GLU ALA SEQRES 27 B 373 ILE ALA GLU ASN GLY PHE GLU ILE ILE HIS HIS ARG VAL SEQRES 28 B 373 ILE GLY HIS GLY GLY LEU MET VAL HIS LEU TYR VAL VAL SEQRES 29 B 373 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET SAM A 401 27 HET SAM B 401 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *382(H2 O) HELIX 1 1 ILE A 11 LYS A 25 1 15 HELIX 2 2 PRO A 36 ILE A 39 5 4 HELIX 3 3 SER A 63 SER A 72 1 10 HELIX 4 4 GLU A 94 SER A 108 1 15 HELIX 5 5 LEU A 109 VAL A 115 5 7 HELIX 6 6 THR A 134 ARG A 152 1 19 HELIX 7 7 LYS A 203 GLU A 215 1 13 HELIX 8 8 GLY A 229 ARG A 238 1 10 HELIX 9 9 TYR A 250 ALA A 264 1 15 HELIX 10 10 VAL A 266 ILE A 270 5 5 HELIX 11 11 ASP A 276 TYR A 283 5 8 HELIX 12 12 MET A 305 VAL A 320 1 16 HELIX 13 13 GLU A 331 ASN A 342 1 12 HELIX 14 14 ILE B 11 LYS B 25 1 15 HELIX 15 15 PRO B 36 ILE B 39 5 4 HELIX 16 16 SER B 63 SER B 72 1 10 HELIX 17 17 GLU B 94 SER B 108 1 15 HELIX 18 18 LEU B 109 PHE B 114 5 6 HELIX 19 19 THR B 134 ARG B 152 1 19 HELIX 20 20 LYS B 203 ALA B 214 1 12 HELIX 21 21 GLY B 229 ARG B 238 1 10 HELIX 22 22 TYR B 250 GLY B 265 1 16 HELIX 23 23 VAL B 266 ASP B 268 5 3 HELIX 24 24 ASP B 276 TYR B 283 5 8 HELIX 25 25 MET B 305 VAL B 320 1 16 HELIX 26 26 GLU B 331 ASN B 342 1 12 SHEET 1 A 8 PHE A 30 GLU A 34 0 SHEET 2 A 8 ARG A 42 ALA A 47 -1 O GLU A 46 N GLN A 31 SHEET 3 A 8 LYS A 2 THR A 6 -1 N PHE A 3 O LEU A 45 SHEET 4 A 8 ARG A 77 LYS A 86 -1 O GLU A 81 N LYS A 2 SHEET 5 A 8 VAL A 175 ASP A 181 -1 O PHE A 176 N GLU A 85 SHEET 6 A 8 VAL A 165 ILE A 172 -1 N ARG A 168 O GLY A 179 SHEET 7 A 8 THR A 120 LYS A 128 1 N ARG A 124 O ALA A 169 SHEET 8 A 8 LEU A 157 VAL A 158 1 O LEU A 157 N PHE A 121 SHEET 1 B 2 ALA A 50 VAL A 53 0 SHEET 2 B 2 LYS A 59 LEU A 62 -1 O LEU A 62 N ALA A 50 SHEET 1 C 7 LYS A 271 GLN A 274 0 SHEET 2 C 7 ILE A 244 GLU A 248 1 N GLY A 246 O ILE A 273 SHEET 3 C 7 VAL A 221 ASP A 223 1 N ASP A 223 O ILE A 245 SHEET 4 C 7 VAL A 287 ASN A 293 1 O PHE A 289 N LEU A 222 SHEET 5 C 7 LEU A 321 THR A 329 1 O GLU A 322 N VAL A 287 SHEET 6 C 7 LEU A 357 LEU A 366 -1 O VAL A 364 N GLY A 325 SHEET 7 C 7 PHE A 344 HIS A 354 -1 N ILE A 352 O VAL A 359 SHEET 1 D 8 PHE B 30 GLU B 34 0 SHEET 2 D 8 ARG B 42 ALA B 47 -1 O GLU B 46 N GLN B 31 SHEET 3 D 8 LYS B 2 THR B 6 -1 N LEU B 5 O LEU B 43 SHEET 4 D 8 ARG B 77 LYS B 86 -1 O GLU B 81 N LYS B 2 SHEET 5 D 8 VAL B 175 ASP B 181 -1 O PHE B 176 N GLU B 85 SHEET 6 D 8 VAL B 165 ILE B 172 -1 N ILE B 172 O VAL B 175 SHEET 7 D 8 THR B 120 LYS B 128 1 N ARG B 124 O PHE B 167 SHEET 8 D 8 LEU B 157 VAL B 158 1 O LEU B 157 N PHE B 121 SHEET 1 E 2 ALA B 50 VAL B 53 0 SHEET 2 E 2 LYS B 59 LEU B 62 -1 O LEU B 62 N ALA B 50 SHEET 1 F 7 ILE B 270 GLN B 274 0 SHEET 2 F 7 ILE B 244 GLU B 248 1 N GLY B 246 O LYS B 271 SHEET 3 F 7 VAL B 221 ASP B 223 1 N VAL B 221 O ILE B 245 SHEET 4 F 7 VAL B 287 ASN B 293 1 O PHE B 289 N LEU B 222 SHEET 5 F 7 LEU B 321 THR B 329 1 O VAL B 326 N ALA B 290 SHEET 6 F 7 LEU B 357 LEU B 366 -1 O VAL B 364 N GLY B 325 SHEET 7 F 7 PHE B 344 HIS B 354 -1 N GLU B 345 O LYS B 365 SITE 1 AC1 20 HIS A 198 ALA A 200 HIS A 201 LEU A 202 SITE 2 AC1 20 PRO A 224 MET A 225 CYS A 226 GLY A 227 SITE 3 AC1 20 SER A 228 THR A 230 GLU A 248 LYS A 249 SITE 4 AC1 20 TYR A 250 HIS A 253 GLY A 275 ASP A 276 SITE 5 AC1 20 ALA A 277 ASN A 293 LEU A 309 HOH A 635 SITE 1 AC2 20 HIS B 198 ALA B 200 HIS B 201 LEU B 202 SITE 2 AC2 20 PRO B 224 MET B 225 CYS B 226 GLY B 227 SITE 3 AC2 20 SER B 228 THR B 230 GLU B 248 LYS B 249 SITE 4 AC2 20 TYR B 250 HIS B 253 GLY B 275 ASP B 276 SITE 5 AC2 20 ALA B 277 ASN B 293 HOH B 544 HOH B 579 CRYST1 82.080 45.170 121.430 90.00 91.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012183 0.000000 0.000381 0.00000 SCALE2 0.000000 0.022139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008239 0.00000