HEADER LYASE 31-AUG-11 3TM7 TITLE PROCESSED ASPARTATE DECARBOXYLASE MUTANT WITH ASN72 MUTATED TO ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE 1-DECARBOXYLASE BETA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE; COMPND 5 EC: 4.1.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE; COMPND 11 EC: 4.1.1.11; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B0131, JW0127, PAND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 83333; SOURCE 14 STRAIN: K12; SOURCE 15 GENE: B0131, JW0127, PAND; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: C41DE3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS AUTO-PROCESSING, LYASE, PYRUVOYL EXPDTA X-RAY DIFFRACTION AUTHOR M.E.WEBB,C.M.C.LOBLEY,F.SOLIMAN,M.L.KILKENNY,A.G.SMITH,C.ABELL, AUTHOR 2 T.L.BLUNDELL REVDAT 5 28-FEB-24 3TM7 1 REMARK SEQADV REVDAT 4 17-JUL-19 3TM7 1 REMARK REVDAT 3 24-JAN-18 3TM7 1 AUTHOR REVDAT 2 23-MAY-12 3TM7 1 JRNL REVDAT 1 11-APR-12 3TM7 0 JRNL AUTH M.E.WEBB,C.M.LOBLEY,F.SOLIMAN,M.L.KILKENNY,A.G.SMITH, JRNL AUTH 2 T.L.BLUNDELL,C.ABELL JRNL TITL STRUCTURE OF ESCHERICHIA COLI ASPARTATE ALPHA-DECARBOXYLASE JRNL TITL 2 ASN72ALA: PROBING THE ROLE OF ASN72 IN PYRUVOYL COFACTOR JRNL TITL 3 FORMATION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 414 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22505409 JRNL DOI 10.1107/S1744309112009487 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2507 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.1730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1904 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1764 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2581 ; 1.613 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4070 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 7.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2125 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 353 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2130 ; 0.253 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1209 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.313 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 90 ; 0.341 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.468 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1216 ; 2.165 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1942 ; 3.302 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 688 ; 3.798 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 639 ; 5.542 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9781 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING OPTIMIZED REMARK 200 FOR 1.488 AND 0.98A REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36655 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.75 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 59.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.75 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6-2.4M AMMONIUM SULPHATE, 0.1M REMARK 280 CITRIC ACID, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.93567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.87133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.90350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 179.83917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.96783 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.93567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 143.87133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 179.83917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.90350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.96783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -215.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.90350 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 119 REMARK 465 ALA B 120 REMARK 465 ILE B 121 REMARK 465 PRO B 122 REMARK 465 VAL B 123 REMARK 465 GLN B 124 REMARK 465 VAL B 125 REMARK 465 ALA B 126 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 ALA D 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 22 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 THR B 117 OG1 CG2 REMARK 470 LYS C 14 CG CD CE NZ REMARK 470 HIS C 21 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 96 CG CD OE1 OE2 REMARK 470 GLU D 109 CD OE1 OE2 REMARK 470 ARG D 116 CG CD NE CZ NH1 NH2 REMARK 470 THR D 117 OG1 CG2 REMARK 470 GLN D 124 CG CD OE1 NE2 REMARK 470 VAL D 125 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 B 2 O HOH B 211 0.85 REMARK 500 O HOH D 182 O HOH D 218 1.65 REMARK 500 O2 SO4 B 2 O HOH B 221 1.71 REMARK 500 S SO4 B 2 O HOH B 211 1.76 REMARK 500 O HOH B 177 O HOH B 212 1.81 REMARK 500 O HOH B 21 O HOH B 213 1.85 REMARK 500 O HOH B 222 O HOH B 224 1.89 REMARK 500 O HOH B 19 O HOH B 212 1.89 REMARK 500 O HOH B 148 O HOH B 191 1.93 REMARK 500 O HOH D 138 O HOH D 218 1.96 REMARK 500 O1 SO4 B 2 O HOH B 225 1.97 REMARK 500 O HOH B 129 O HOH B 176 1.98 REMARK 500 O HOH B 170 O HOH B 216 2.04 REMARK 500 O4 SO4 B 2 O HOH B 222 2.09 REMARK 500 O HOH A 186 O HOH D 173 2.12 REMARK 500 O2 SO4 B 2 O HOH B 211 2.12 REMARK 500 O HOH B 224 O HOH B 225 2.15 REMARK 500 O HOH B 192 O HOH B 223 2.18 REMARK 500 O HOH D 185 O HOH D 190 2.18 REMARK 500 O HOH D 158 O HOH D 207 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 216 O HOH D 2 6655 1.65 REMARK 500 O HOH B 176 O HOH D 178 11555 1.67 REMARK 500 O HOH B 222 O HOH C 104 11555 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 95 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 29 125.57 -39.58 REMARK 500 THR B 57 -150.33 -148.80 REMARK 500 ASP D 29 122.94 -38.42 REMARK 500 THR D 57 -149.84 -149.02 REMARK 500 ALA D 118 78.94 53.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 25 CYS B 26 123.96 REMARK 500 ARG D 116 THR D 117 34.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AW8 RELATED DB: PDB REMARK 900 A POINT MUTANT OF THE SAME PROTIEIN REMARK 900 RELATED ID: 1PPY RELATED DB: PDB REMARK 900 AN ALTERNATIVE POINT MUTANT OF THE SAME PROTIEIN REMARK 900 RELATED ID: 1PQE RELATED DB: PDB REMARK 900 AN ALTERNATIVE POINT MUTANT OF THE SAME PROTIEIN REMARK 900 RELATED ID: 1PQF RELATED DB: PDB REMARK 900 AN ALTERNATIVE POINT MUTANT OF THE SAME PROTIEIN REMARK 900 RELATED ID: 1PQH RELATED DB: PDB REMARK 900 AN ALTERNATIVE POINT MUTANT OF THE SAME PROTIEIN REMARK 900 RELATED ID: 1PYQ RELATED DB: PDB REMARK 900 AN ALTERNATIVE POINT MUTANT OF THE SAME PROTIEIN DBREF 3TM7 A 1 24 UNP P0A790 PAND_ECOLI 1 24 DBREF 3TM7 B 25 126 UNP P0A790 PAND_ECOLI 25 126 DBREF 3TM7 C 1 24 UNP P0A790 PAND_ECOLI 1 24 DBREF 3TM7 D 25 126 UNP P0A790 PAND_ECOLI 25 126 SEQADV 3TM7 GLY A -1 UNP P0A790 EXPRESSION TAG SEQADV 3TM7 SER A 0 UNP P0A790 EXPRESSION TAG SEQADV 3TM7 ALA B 72 UNP P0A790 ASN 72 ENGINEERED MUTATION SEQADV 3TM7 GLY C -1 UNP P0A790 EXPRESSION TAG SEQADV 3TM7 SER C 0 UNP P0A790 EXPRESSION TAG SEQADV 3TM7 ALA D 72 UNP P0A790 ASN 72 ENGINEERED MUTATION SEQRES 1 A 26 GLY SER MET ILE ARG THR MET LEU GLN GLY LYS LEU HIS SEQRES 2 A 26 ARG VAL LYS VAL THR HIS ALA ASP LEU HIS TYR GLU GLY SEQRES 1 B 102 SER CYS ALA ILE ASP GLN ASP PHE LEU ASP ALA ALA GLY SEQRES 2 B 102 ILE LEU GLU ASN GLU ALA ILE ASP ILE TRP ASN VAL THR SEQRES 3 B 102 ASN GLY LYS ARG PHE SER THR TYR ALA ILE ALA ALA GLU SEQRES 4 B 102 ARG GLY SER ARG ILE ILE SER VAL ALA GLY ALA ALA ALA SEQRES 5 B 102 HIS CYS ALA SER VAL GLY ASP ILE VAL ILE ILE ALA SER SEQRES 6 B 102 PHE VAL THR MET PRO ASP GLU GLU ALA ARG THR TRP ARG SEQRES 7 B 102 PRO ASN VAL ALA TYR PHE GLU GLY ASP ASN GLU MET LYS SEQRES 8 B 102 ARG THR ALA LYS ALA ILE PRO VAL GLN VAL ALA SEQRES 1 C 26 GLY SER MET ILE ARG THR MET LEU GLN GLY LYS LEU HIS SEQRES 2 C 26 ARG VAL LYS VAL THR HIS ALA ASP LEU HIS TYR GLU GLY SEQRES 1 D 102 SER CYS ALA ILE ASP GLN ASP PHE LEU ASP ALA ALA GLY SEQRES 2 D 102 ILE LEU GLU ASN GLU ALA ILE ASP ILE TRP ASN VAL THR SEQRES 3 D 102 ASN GLY LYS ARG PHE SER THR TYR ALA ILE ALA ALA GLU SEQRES 4 D 102 ARG GLY SER ARG ILE ILE SER VAL ALA GLY ALA ALA ALA SEQRES 5 D 102 HIS CYS ALA SER VAL GLY ASP ILE VAL ILE ILE ALA SER SEQRES 6 D 102 PHE VAL THR MET PRO ASP GLU GLU ALA ARG THR TRP ARG SEQRES 7 D 102 PRO ASN VAL ALA TYR PHE GLU GLY ASP ASN GLU MET LYS SEQRES 8 D 102 ARG THR ALA LYS ALA ILE PRO VAL GLN VAL ALA HET SO4 B 2 5 HET SO4 D 1 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *227(H2 O) HELIX 1 1 GLN B 30 GLY B 37 1 8 HELIX 2 2 ALA B 74 CYS B 78 5 5 HELIX 3 3 ASP B 95 ARG B 99 1 5 HELIX 4 4 GLN D 30 GLY D 37 1 8 HELIX 5 5 ALA D 74 CYS D 78 5 5 HELIX 6 6 ASP D 95 ARG D 99 1 5 SHEET 1 A 6 ARG B 54 TYR B 58 0 SHEET 2 A 6 ALA B 43 ASN B 48 -1 N ILE B 46 O PHE B 55 SHEET 3 A 6 ILE B 84 PRO B 94 -1 O ALA B 88 N ASP B 45 SHEET 4 A 6 ILE A 2 LYS A 14 -1 N MET A 5 O VAL B 91 SHEET 5 A 6 ASN B 104 GLU B 109 1 O ALA B 106 N HIS A 11 SHEET 6 A 6 GLU B 113 LYS B 115 -1 O LYS B 115 N TYR B 107 SHEET 1 B 4 HIS A 17 ASP A 19 0 SHEET 2 B 4 ILE B 69 ALA B 72 1 O VAL B 71 N HIS A 17 SHEET 3 B 4 CYS B 26 ASP B 29 -1 N ALA B 27 O SER B 70 SHEET 4 B 4 ILE B 60 ALA B 62 1 O ALA B 62 N ILE B 28 SHEET 1 C 9 HIS C 17 ASP C 19 0 SHEET 2 C 9 ILE D 69 ALA D 72 1 O VAL D 71 N HIS C 17 SHEET 3 C 9 CYS D 26 ASP D 29 -1 N ALA D 27 O SER D 70 SHEET 4 C 9 ARG D 54 ALA D 62 1 O ILE D 60 N ILE D 28 SHEET 5 C 9 ALA D 43 ASN D 48 -1 N ILE D 46 O PHE D 55 SHEET 6 C 9 ILE D 84 PRO D 94 -1 O ALA D 88 N ASP D 45 SHEET 7 C 9 ILE C 2 LYS C 14 -1 N VAL C 13 O VAL D 85 SHEET 8 C 9 ASN D 104 GLU D 109 1 O ALA D 106 N HIS C 11 SHEET 9 C 9 GLU D 113 MET D 114 -1 O GLU D 113 N GLU D 109 CISPEP 1 GLY A -1 SER A 0 0 4.05 CISPEP 2 THR D 117 ALA D 118 0 -7.69 SITE 1 AC1 13 SER B 25 THR B 57 ALA B 72 ALA B 74 SITE 2 AC1 13 ALA B 75 HOH B 211 HOH B 221 HOH B 222 SITE 3 AC1 13 HOH B 223 HOH B 225 HOH C 104 TRP D 47 SITE 4 AC1 13 ARG D 54 SITE 1 AC2 8 TRP B 47 ARG B 54 GLY C 24 SER D 25 SITE 2 AC2 8 ALA D 72 ALA D 74 ALA D 75 HOH D 135 CRYST1 71.083 71.083 215.807 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014068 0.008122 0.000000 0.00000 SCALE2 0.000000 0.016244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004634 0.00000