HEADER TRANSFERASE 31-AUG-11 3TMA TITLE CRYSTAL STRUCTURE OF TRMN FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: TTC1157, TT_C1157; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ROSSMANN FOLD METHYLTRANSFERASE, THUMP DOMAIN, TRNA KEYWDS 2 METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FISLAGE,M.ROOVERS,I.TUSZYNSKA,J.M.BUJNICKI,L.DROOGMANS,W.VERSEES REVDAT 4 13-SEP-23 3TMA 1 REMARK SEQADV REVDAT 3 03-OCT-12 3TMA 1 JRNL REVDAT 2 09-MAY-12 3TMA 1 COMPND REVDAT 1 14-MAR-12 3TMA 0 JRNL AUTH M.FISLAGE,M.ROOVERS,I.TUSZYNSKA,J.M.BUJNICKI,L.DROOGMANS, JRNL AUTH 2 W.VERSEES JRNL TITL CRYSTAL STRUCTURES OF THE TRNA:M2G6 METHYLTRANSFERASE JRNL TITL 2 TRM14/TRMN FROM TWO DOMAINS OF LIFE. JRNL REF NUCLEIC ACIDS RES. V. 40 5149 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22362751 JRNL DOI 10.1093/NAR/GKS163 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2715 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3699 ; 1.516 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;27.362 ;20.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;16.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;20.992 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2102 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 1.455 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 2.477 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 3.841 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 6.092 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2600 32.9880 55.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.0905 REMARK 3 T33: 0.0154 T12: -0.0149 REMARK 3 T13: 0.0121 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.4655 L22: 1.1338 REMARK 3 L33: 1.5339 L12: -0.5160 REMARK 3 L13: 0.5321 L23: -0.1930 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.0372 S13: 0.0005 REMARK 3 S21: 0.0616 S22: 0.0868 S23: -0.1050 REMARK 3 S31: -0.0096 S32: 0.0498 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6460 28.3080 46.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1775 REMARK 3 T33: 0.0924 T12: -0.0004 REMARK 3 T13: 0.0083 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.7720 L22: 0.1817 REMARK 3 L33: 1.5766 L12: 0.4160 REMARK 3 L13: 1.8765 L23: 0.4709 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.2555 S13: -0.0698 REMARK 3 S21: 0.0357 S22: 0.0348 S23: -0.0410 REMARK 3 S31: 0.0604 S32: 0.1502 S33: -0.0686 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7000 22.4320 28.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.0448 T22: 0.1026 REMARK 3 T33: 0.0179 T12: -0.0298 REMARK 3 T13: 0.0018 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 1.8278 L22: 1.0698 REMARK 3 L33: 3.6175 L12: 0.4252 REMARK 3 L13: -0.3692 L23: -0.6895 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: 0.1310 S13: -0.1075 REMARK 3 S21: -0.1096 S22: 0.0856 S23: -0.0346 REMARK 3 S31: 0.3290 S32: -0.0326 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3980 33.5410 24.0570 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1297 REMARK 3 T33: 0.0472 T12: -0.0257 REMARK 3 T13: 0.0129 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 4.9408 L22: 0.9018 REMARK 3 L33: 2.1619 L12: -0.4007 REMARK 3 L13: 1.0763 L23: 0.4999 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.1252 S13: -0.0805 REMARK 3 S21: -0.0519 S22: 0.1454 S23: 0.0453 REMARK 3 S31: -0.0848 S32: 0.1035 S33: 0.0052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : MONOCHROMATOR (HORIZONTALLY SIDE REMARK 200 DIFFRACTING SILICON 111 CRYSTAL) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.30 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3TLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CITRATE/PHOSPHATE, 15% PEG REMARK 280 6000, 200 MM NACL, 100 MM SODIUM CITRATE, PH 3.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.36667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.18333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.18333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.36667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 96.36667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ARG A 266 REMARK 465 LEU A 267 REMARK 465 GLY A 268 REMARK 465 ARG A 269 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 98 CZ NH1 NH2 REMARK 480 GLU A 142 CD OE1 OE2 REMARK 480 ARG A 153 CZ NH1 NH2 REMARK 480 LEU A 164 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PO4 A 401 O HOH A 696 2.07 REMARK 500 O HOH A 569 O HOH A 664 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 645 O HOH A 645 6555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 55 -62.03 -92.98 REMARK 500 HIS A 55 -65.96 -90.89 REMARK 500 GLU A 88 -104.99 -54.74 REMARK 500 ARG A 157 22.82 -78.68 REMARK 500 LEU A 164 -17.72 78.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 68 GLU A 69 149.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH REMARK 900 S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 3TM4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH REMARK 900 S-ADENOSYLMETHIONINE REMARK 900 RELATED ID: 3TM5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH REMARK 900 SINEFUNGIN DBREF 3TMA A 1 335 UNP Q72IH5 Q72IH5_THET2 1 335 SEQADV 3TMA GLY A -18 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA SER A -17 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA SER A -16 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A -15 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A -14 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A -13 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A -12 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A -11 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A -10 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA SER A -9 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA SER A -8 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA GLY A -7 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA LEU A -6 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA VAL A -5 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA PRO A -4 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA ARG A -3 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA GLY A -2 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA SER A -1 UNP Q72IH5 EXPRESSION TAG SEQADV 3TMA HIS A 0 UNP Q72IH5 EXPRESSION TAG SEQRES 1 A 354 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 354 VAL PRO ARG GLY SER HIS MET TRP LEU GLU ALA THR THR SEQRES 3 A 354 HIS PRO GLY LEU GLU ASP LEU LEU LEU GLU GLU LEU SER SEQRES 4 A 354 ALA LEU TYR PRO GLY GLU GLY ALA GLU VAL ASP ALA ARG SEQRES 5 A 354 LYS GLY ARG VAL ARG ILE PRO ARG ALA TRP VAL GLY GLU SEQRES 6 A 354 GLU ALA LEU GLY LEU ARG LEU ALA HIS HIS LEU VAL LEU SEQRES 7 A 354 PHE ARG ALA ARG LEU LEU LEU SER ARG GLU ASP PRO LEU SEQRES 8 A 354 GLY ALA LEU GLU ARG ALA ALA LEU ALA LEU PRO TRP PRO SEQRES 9 A 354 GLU LEU GLU GLY ALA GLY SER PHE ARG VAL GLU ALA ARG SEQRES 10 A 354 ARG GLU GLY GLU HIS PRO PHE THR SER PRO GLU VAL GLU SEQRES 11 A 354 ARG ARG VAL GLY GLU ALA LEU HIS ARG ALA TYR GLY VAL SEQRES 12 A 354 PRO VAL ASP LEU LYS ARG PRO ALA VAL ARG VAL ARG VAL SEQRES 13 A 354 ASP VAL ARG GLY GLU GLU ALA PHE LEU GLY VAL GLN LEU SEQRES 14 A 354 THR GLU ARG PRO LEU SER ARG ARG PHE PRO LYS ALA ALA SEQRES 15 A 354 LEU ARG GLY SER LEU THR PRO VAL LEU ALA GLN ALA LEU SEQRES 16 A 354 LEU ARG LEU ALA ASP ALA ARG PRO GLY MET ARG VAL LEU SEQRES 17 A 354 ASP PRO PHE THR GLY SER GLY THR ILE ALA LEU GLU ALA SEQRES 18 A 354 ALA SER THR LEU GLY PRO THR SER PRO VAL TYR ALA GLY SEQRES 19 A 354 ASP LEU ASP GLU LYS ARG LEU GLY LEU ALA ARG GLU ALA SEQRES 20 A 354 ALA LEU ALA SER GLY LEU SER TRP ILE ARG PHE LEU ARG SEQRES 21 A 354 ALA ASP ALA ARG HIS LEU PRO ARG PHE PHE PRO GLU VAL SEQRES 22 A 354 ASP ARG ILE LEU ALA ASN PRO PRO HIS GLY LEU ARG LEU SEQRES 23 A 354 GLY ARG LYS GLU GLY LEU PHE HIS LEU TYR TRP ASP PHE SEQRES 24 A 354 LEU ARG GLY ALA LEU ALA LEU LEU PRO PRO GLY GLY ARG SEQRES 25 A 354 VAL ALA LEU LEU THR LEU ARG PRO ALA LEU LEU LYS ARG SEQRES 26 A 354 ALA LEU PRO PRO GLY PHE ALA LEU ARG HIS ALA ARG VAL SEQRES 27 A 354 VAL GLU GLN GLY GLY VAL TYR PRO ARG VAL PHE VAL LEU SEQRES 28 A 354 GLU LYS LEU HET PO4 A 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *196(H2 O) HELIX 1 1 LEU A 11 TYR A 23 1 13 HELIX 2 2 GLY A 45 LEU A 51 5 7 HELIX 3 3 ASP A 70 ALA A 81 1 12 HELIX 4 4 GLU A 86 GLY A 91 1 6 HELIX 5 5 THR A 106 GLY A 123 1 18 HELIX 6 6 PRO A 154 ARG A 158 5 5 HELIX 7 7 PHE A 159 ALA A 163 5 5 HELIX 8 8 THR A 169 ALA A 180 1 12 HELIX 9 9 GLY A 196 GLY A 207 1 12 HELIX 10 10 ASP A 218 SER A 232 1 15 HELIX 11 11 ASP A 243 PHE A 250 5 8 HELIX 12 12 GLU A 271 LEU A 287 1 17 HELIX 13 13 ARG A 300 LEU A 308 1 9 SHEET 1 A 7 GLU A 29 ASP A 31 0 SHEET 2 A 7 ARG A 36 PRO A 40 -1 O ARG A 38 N GLU A 29 SHEET 3 A 7 TRP A 2 THR A 6 -1 N LEU A 3 O ILE A 39 SHEET 4 A 7 LEU A 57 LEU A 65 -1 O PHE A 60 N TRP A 2 SHEET 5 A 7 GLU A 143 GLN A 149 -1 O ALA A 144 N LEU A 64 SHEET 6 A 7 VAL A 133 ARG A 140 -1 N ARG A 140 O GLU A 143 SHEET 7 A 7 PHE A 93 GLU A 100 1 N ARG A 98 O VAL A 139 SHEET 1 B 7 ARG A 238 ARG A 241 0 SHEET 2 B 7 VAL A 212 ASP A 216 1 N VAL A 212 O ARG A 238 SHEET 3 B 7 VAL A 188 ASP A 190 1 N ASP A 190 O TYR A 213 SHEET 4 B 7 ARG A 256 ALA A 259 1 O LEU A 258 N LEU A 189 SHEET 5 B 7 ARG A 293 THR A 298 1 O ALA A 295 N ALA A 259 SHEET 6 B 7 ARG A 328 LYS A 334 -1 O PHE A 330 N LEU A 296 SHEET 7 B 7 PHE A 312 VAL A 319 -1 N ARG A 315 O VAL A 331 CISPEP 1 ARG A 165 GLY A 166 0 -8.06 SITE 1 AC1 7 GLU A 76 ARG A 120 ARG A 293 ARG A 315 SITE 2 AC1 7 HIS A 316 HOH A 559 HOH A 696 CRYST1 65.860 65.860 144.550 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015184 0.008766 0.000000 0.00000 SCALE2 0.000000 0.017533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006918 0.00000