HEADER HYDROLASE 31-AUG-11 3TME TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+NVIAGLA TITLE 2 V23E AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE A (UNP RESIDUES 83-231); COMPND 5 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 6 EC: 3.1.31.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NUC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS STAPHYLOCOCCAL NUCLEASE, HYPERSTABLE, PDTP, IONIZABLE GROUP, HIGH- KEYWDS 2 ENERGY CONFORMATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ROBINSON,J.L.SCHLESSMAN,A.HEROUX,B.GARCIA-MORENO E. REVDAT 4 13-SEP-23 3TME 1 REMARK SEQADV REVDAT 3 06-MAR-13 3TME 1 JRNL TITLE REVDAT 2 19-OCT-11 3TME 1 REMARK REVDAT 1 14-SEP-11 3TME 0 JRNL AUTH A.C.ROBINSON,J.L.SCHLESSMAN,A.MAJUMDAR,B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+NVIAGLA V23E AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1132 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1532 ; 1.848 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 6.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;32.960 ;25.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;14.254 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 5.459 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 164 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 821 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 660 ; 1.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1063 ; 2.506 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 472 ; 3.388 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 462 ; 5.200 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5330 -24.3200 -16.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.0350 REMARK 3 T33: 0.0300 T12: 0.0214 REMARK 3 T13: -0.0139 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.8212 L22: 0.1952 REMARK 3 L33: 0.4324 L12: 0.4140 REMARK 3 L13: 0.3221 L23: 0.3751 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.0591 S13: -0.0356 REMARK 3 S21: 0.0377 S22: 0.0390 S23: 0.1118 REMARK 3 S31: 0.0740 S32: 0.0426 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0700 -20.6090 -10.5050 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0041 REMARK 3 T33: 0.0348 T12: 0.0527 REMARK 3 T13: -0.1048 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 9.7552 L22: -11.2330 REMARK 3 L33: 11.3186 L12: 0.4808 REMARK 3 L13: 2.2650 L23: -4.8989 REMARK 3 S TENSOR REMARK 3 S11: -0.4335 S12: -0.2981 S13: -0.1077 REMARK 3 S21: -0.1917 S22: -0.0083 S23: 0.2483 REMARK 3 S31: -0.7212 S32: 0.2366 S33: 0.4418 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2090 -18.9580 -19.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0380 REMARK 3 T33: 0.0527 T12: 0.0151 REMARK 3 T13: -0.0196 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.1552 L22: 1.4671 REMARK 3 L33: -0.2460 L12: -0.0069 REMARK 3 L13: -0.3039 L23: 0.1760 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.0109 S13: 0.0096 REMARK 3 S21: 0.0134 S22: 0.0887 S23: -0.0334 REMARK 3 S31: 0.0132 S32: 0.0118 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0460 -4.7440 -4.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: 0.1113 REMARK 3 T33: 0.0025 T12: -0.0152 REMARK 3 T13: -0.0030 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: -0.0074 L22: -1.2922 REMARK 3 L33: 7.3510 L12: 1.4375 REMARK 3 L13: 0.4061 L23: -3.6087 REMARK 3 S TENSOR REMARK 3 S11: 0.2063 S12: 0.0473 S13: 0.0262 REMARK 3 S21: -0.0999 S22: -0.2358 S23: 0.1717 REMARK 3 S31: -0.2199 S32: 0.6193 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6180 -14.2950 -3.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0449 REMARK 3 T33: 0.0131 T12: 0.0458 REMARK 3 T13: -0.0167 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: -0.0950 L22: 3.2391 REMARK 3 L33: 2.8154 L12: 1.7784 REMARK 3 L13: -0.6359 L23: 3.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.1356 S13: -0.0018 REMARK 3 S21: 0.1903 S22: 0.0445 S23: -0.0334 REMARK 3 S31: 0.2372 S32: 0.1101 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8880 -21.0440 -18.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0300 REMARK 3 T33: 0.0497 T12: -0.0060 REMARK 3 T13: -0.0055 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: -0.4516 L22: 0.7471 REMARK 3 L33: -0.0177 L12: -0.2424 REMARK 3 L13: 0.0319 L23: 0.9272 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.1516 S13: -0.1046 REMARK 3 S21: 0.0831 S22: -0.0596 S23: 0.0547 REMARK 3 S31: 0.0456 S32: 0.0090 S33: 0.0844 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2050 -13.6950 -15.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0298 REMARK 3 T33: 0.0453 T12: 0.0042 REMARK 3 T13: -0.0004 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4507 L22: 0.6986 REMARK 3 L33: 0.0040 L12: 0.0707 REMARK 3 L13: 0.0565 L23: 0.0516 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: 0.0170 S13: -0.0304 REMARK 3 S21: 0.0351 S22: 0.0715 S23: 0.0220 REMARK 3 S31: 0.0528 S32: 0.0001 S33: -0.0232 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7510 -5.4900 -21.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.0411 REMARK 3 T33: 0.0508 T12: -0.0016 REMARK 3 T13: -0.0077 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.7695 L22: 1.0494 REMARK 3 L33: -0.4129 L12: -0.0782 REMARK 3 L13: 0.1886 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.0286 S13: -0.0067 REMARK 3 S21: -0.1078 S22: 0.0245 S23: 0.0637 REMARK 3 S31: -0.0661 S32: 0.0099 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2910 -2.4330 -8.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0650 REMARK 3 T33: 0.0445 T12: 0.0426 REMARK 3 T13: 0.0278 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.1881 L22: 1.0134 REMARK 3 L33: 1.3366 L12: -0.6250 REMARK 3 L13: 1.1270 L23: -1.1473 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: -0.1260 S13: -0.0502 REMARK 3 S21: 0.0821 S22: 0.3008 S23: 0.0624 REMARK 3 S31: -0.2680 S32: -0.2210 S33: -0.1772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3TME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MERIDIONALLY-BENT FUSED SILICA REMARK 200 MIRROR WITH PALLADIUM AND REMARK 200 UNCOATED STRIPES VERTICALLY- REMARK 200 FOCUSING AT 6.6:1 DEMAGNIFICATION REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.1 REMARK 200 STARTING MODEL: PDB ENTRY 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.35350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.05450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.35350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.05450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 83 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 -108.59 50.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QOL RELATED DB: PDB DBREF 3TME A 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 3TME ASN A 21 UNP P00644 ASP 103 ENGINEERED MUTATION SEQADV 3TME GLU A 23 UNP P00644 VAL 105 ENGINEERED MUTATION SEQADV 3TME VAL A 33 UNP P00644 THR 115 ENGINEERED MUTATION SEQADV 3TME ILE A 41 UNP P00644 THR 123 ENGINEERED MUTATION SEQADV 3TME A UNP P00644 THR 126 DELETION SEQADV 3TME A UNP P00644 LYS 127 DELETION SEQADV 3TME A UNP P00644 HIS 128 DELETION SEQADV 3TME A UNP P00644 PRO 129 DELETION SEQADV 3TME A UNP P00644 LYS 130 DELETION SEQADV 3TME A UNP P00644 LYS 131 DELETION SEQADV 3TME PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 3TME ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 3TME ALA A 59 UNP P00644 SER 141 ENGINEERED MUTATION SEQADV 3TME GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 3TME LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 3TME ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASN THR GLU LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET VAL PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP ILE PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 ALA ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET THP A 150 25 HET MRD A 151 8 HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 THP C10 H16 N2 O11 P2 FORMUL 3 MRD C6 H14 O2 FORMUL 4 HOH *118(H2 O) HELIX 1 1 TYR A 54 ASN A 68 1 15 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 HIS A 121 GLU A 135 1 15 HELIX 4 4 LEU A 137 SER A 141 5 5 SHEET 1 A 6 GLN A 30 MET A 32 0 SHEET 2 A 6 LYS A 24 TYR A 27 -1 N LEU A 25 O MET A 32 SHEET 3 A 6 LYS A 9 ILE A 15 -1 N ILE A 15 O LYS A 24 SHEET 4 A 6 ILE A 72 GLU A 75 -1 O VAL A 74 N GLU A 10 SHEET 5 A 6 GLY A 88 ALA A 94 -1 O TYR A 91 N GLU A 75 SHEET 6 A 6 PHE A 34 LEU A 36 1 N ARG A 35 O GLY A 88 SHEET 1 B 6 GLN A 30 MET A 32 0 SHEET 2 B 6 LYS A 24 TYR A 27 -1 N LEU A 25 O MET A 32 SHEET 3 B 6 LYS A 9 ILE A 15 -1 N ILE A 15 O LYS A 24 SHEET 4 B 6 ILE A 72 GLU A 75 -1 O VAL A 74 N GLU A 10 SHEET 5 B 6 GLY A 88 ALA A 94 -1 O TYR A 91 N GLU A 75 SHEET 6 B 6 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94 SHEET 1 C 2 VAL A 39 ASP A 40 0 SHEET 2 C 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 SITE 1 AC1 21 PRO A 11 ARG A 35 HOH A 48 LYS A 84 SITE 2 AC1 21 TYR A 85 ARG A 87 LEU A 89 TYR A 115 SITE 3 AC1 21 LYS A 127 HOH A 152 HOH A 164 HOH A 173 SITE 4 AC1 21 HOH A 187 HOH A 189 HOH A 192 HOH A 201 SITE 5 AC1 21 HOH A 203 HOH A 213 HOH A 232 HOH A 252 SITE 6 AC1 21 HOH A 263 SITE 1 AC2 6 GLU A 23 LYS A 24 LEU A 25 PHE A 34 SITE 2 AC2 6 THR A 62 HOH A 162 CRYST1 31.120 60.109 78.707 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012705 0.00000