HEADER OXIDOREDUCTASE 02-SEP-11 3TNZ TITLE CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) C217A, TITLE 2 C239A BOUND TO FMN AND MONO-IODOTYROSINE (MIT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IODOTYROSINE DEHALOGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IYD-1; COMPND 5 EC: 1.22.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: 10090; SOURCE 6 GENE: DEHAL1, IYD, IYD-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS OXIDOREDUCTASE, FLAVOPROTEIN, MEMBRANE, TRANSMEMBRANE, DEHALOGENASE, KEYWDS 2 IODIDE SALVAGE, FMN, MONO-IODOTYROSINE, MIT, NADP EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BUSS,P.M.MCTAMNEY,S.E.ROKITA REVDAT 3 13-SEP-23 3TNZ 1 REMARK SEQADV REVDAT 2 04-APR-12 3TNZ 1 JRNL REVDAT 1 29-FEB-12 3TNZ 0 JRNL AUTH J.M.BUSS,P.M.MCTAMNEY,S.E.ROKITA JRNL TITL EXPRESSION OF A SOLUBLE FORM OF IODOTYROSINE DEIODINASE FOR JRNL TITL 2 ACTIVE SITE CHARACTERIZATION BY ENGINEERING THE NATIVE JRNL TITL 3 MEMBRANE PROTEIN FROM MUS MUSCULUS. JRNL REF PROTEIN SCI. V. 21 351 2012 JRNL REFN ISSN 0961-8368 JRNL PMID 22238141 JRNL DOI 10.1002/PRO.2020 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5384 - 4.9896 1.00 2679 141 0.1795 0.1873 REMARK 3 2 4.9896 - 3.9646 1.00 2704 161 0.1240 0.1477 REMARK 3 3 3.9646 - 3.4647 1.00 2686 138 0.1529 0.1801 REMARK 3 4 3.4647 - 3.1485 1.00 2705 123 0.1635 0.1912 REMARK 3 5 3.1485 - 2.9231 1.00 2685 149 0.1616 0.2152 REMARK 3 6 2.9231 - 2.7510 1.00 2691 159 0.1692 0.1787 REMARK 3 7 2.7510 - 2.6133 1.00 2702 145 0.1601 0.2242 REMARK 3 8 2.6133 - 2.4997 1.00 2654 154 0.2057 0.2510 REMARK 3 9 2.4997 - 2.4035 1.00 2716 142 0.2023 0.2781 REMARK 3 10 2.4035 - 2.3206 1.00 2704 132 0.2404 0.2573 REMARK 3 11 2.3206 - 2.2500 0.96 2601 123 0.2721 0.3375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 45.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.720 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00420 REMARK 3 B22 (A**2) : -0.00420 REMARK 3 B33 (A**2) : 0.00850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3790 REMARK 3 ANGLE : 1.384 5142 REMARK 3 CHIRALITY : 0.084 572 REMARK 3 PLANARITY : 0.007 638 REMARK 3 DIHEDRAL : 15.627 1456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 66:287) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5607 -9.9542 8.4838 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1675 REMARK 3 T33: 0.1440 T12: 0.0365 REMARK 3 T13: -0.0077 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.2147 L22: 0.7651 REMARK 3 L33: 0.8253 L12: -0.2910 REMARK 3 L13: 0.0471 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0401 S13: -0.0838 REMARK 3 S21: -0.0469 S22: -0.0012 S23: -0.0383 REMARK 3 S31: 0.0273 S32: 0.0983 S33: -0.0382 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 66:286) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9248 -2.1584 14.4572 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1746 REMARK 3 T33: 0.1408 T12: 0.0307 REMARK 3 T13: -0.0044 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.1057 L22: 0.9393 REMARK 3 L33: 0.7697 L12: -0.3968 REMARK 3 L13: -0.0088 L23: 0.0589 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.0683 S13: -0.0346 REMARK 3 S21: 0.0288 S22: 0.0139 S23: 0.0876 REMARK 3 S31: -0.0615 S32: -0.0712 S33: -0.0261 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 66:286 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 66:286 ) REMARK 3 ATOM PAIRS NUMBER : 1773 REMARK 3 RMSD : 0.030 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15000 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 10,000, 0.1M CITRIC ACID PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 VAL A 36 REMARK 465 GLN A 37 REMARK 465 PRO A 38 REMARK 465 TRP A 39 REMARK 465 VAL A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 ASP A 46 REMARK 465 SER A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 GLN A 52 REMARK 465 VAL A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 ASP A 56 REMARK 465 ALA A 57 REMARK 465 GLU A 58 REMARK 465 GLU A 59 REMARK 465 TRP A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 MET B 33 REMARK 465 ALA B 34 REMARK 465 GLN B 35 REMARK 465 VAL B 36 REMARK 465 GLN B 37 REMARK 465 PRO B 38 REMARK 465 TRP B 39 REMARK 465 VAL B 40 REMARK 465 ASP B 41 REMARK 465 GLU B 42 REMARK 465 ASP B 43 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 ASP B 46 REMARK 465 SER B 47 REMARK 465 THR B 48 REMARK 465 GLU B 49 REMARK 465 ASP B 50 REMARK 465 LEU B 51 REMARK 465 GLN B 52 REMARK 465 VAL B 53 REMARK 465 GLU B 54 REMARK 465 GLU B 55 REMARK 465 ASP B 56 REMARK 465 ALA B 57 REMARK 465 GLU B 58 REMARK 465 GLU B 59 REMARK 465 TRP B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 ALA B 63 REMARK 465 GLU B 64 REMARK 465 GLU B 65 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 129 56.00 39.99 REMARK 500 PRO A 130 48.20 -81.86 REMARK 500 LYS A 159 -44.53 -143.64 REMARK 500 ASN A 175 -155.99 -143.57 REMARK 500 LEU A 256 -62.18 -99.48 REMARK 500 HIS A 286 -168.81 -104.94 REMARK 500 GLU B 129 56.45 38.41 REMARK 500 PRO B 130 46.44 -81.98 REMARK 500 LYS B 159 -45.63 -146.03 REMARK 500 ASN B 175 -155.77 -143.92 REMARK 500 LEU B 256 -63.25 -98.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IYR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IYR B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GB5 RELATED DB: PDB REMARK 900 THE WILD TYPE PROTEIN OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) REMARK 900 EXPRESSED IN SF9 BOUND TO FMN REMARK 900 RELATED ID: 3GFD RELATED DB: PDB REMARK 900 THE WILD TYPE PROTEIN OF M. MUSCULUS IYD EXPRESSED IN SF9 BOUND TO REMARK 900 FMN AND MONO-IODOTYROSINE (MIT) REMARK 900 RELATED ID: 3GH8 RELATED DB: PDB REMARK 900 THE WILD TYPE PROTEIN OF M. MUSCULUS IYD EXPRESSED IN SF9 BOUND TO REMARK 900 FMN AND DI-IODOTYROSINE (DIT) REMARK 900 RELATED ID: 3TO0 RELATED DB: PDB REMARK 900 THE C217A, C239A MUTANT PROTEIN OF M. MUSCULUS IYD BOUND TO FLAVIN REMARK 900 MONONUCLEOTIDE (FMN) DBREF 3TNZ A 34 285 UNP Q9DCX8 IYD1_MOUSE 34 285 DBREF 3TNZ B 34 285 UNP Q9DCX8 IYD1_MOUSE 34 285 SEQADV 3TNZ MET A 33 UNP Q9DCX8 INITIATING METHIONINE SEQADV 3TNZ ALA A 217 UNP Q9DCX8 CYS 217 ENGINEERED MUTATION SEQADV 3TNZ ALA A 239 UNP Q9DCX8 CYS 239 ENGINEERED MUTATION SEQADV 3TNZ HIS A 286 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS A 287 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS A 288 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS A 289 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS A 290 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS A 291 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ MET B 33 UNP Q9DCX8 INITIATING METHIONINE SEQADV 3TNZ ALA B 217 UNP Q9DCX8 CYS 217 ENGINEERED MUTATION SEQADV 3TNZ ALA B 239 UNP Q9DCX8 CYS 239 ENGINEERED MUTATION SEQADV 3TNZ HIS B 286 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS B 287 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS B 288 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS B 289 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS B 290 UNP Q9DCX8 EXPRESSION TAG SEQADV 3TNZ HIS B 291 UNP Q9DCX8 EXPRESSION TAG SEQRES 1 A 259 MET ALA GLN VAL GLN PRO TRP VAL ASP GLU ASP LEU LYS SEQRES 2 A 259 ASP SER THR GLU ASP LEU GLN VAL GLU GLU ASP ALA GLU SEQRES 3 A 259 GLU TRP GLN GLU ALA GLU GLU SER VAL GLU HIS ILE PRO SEQRES 4 A 259 PHE SER HIS THR ARG TYR PRO GLU GLN GLU MET ARG MET SEQRES 5 A 259 ARG SER GLN GLU PHE TYR GLU LEU LEU ASN LYS ARG ARG SEQRES 6 A 259 SER VAL ARG PHE ILE SER SER GLU HIS VAL PRO MET GLU SEQRES 7 A 259 VAL ILE GLU ASN VAL ILE LYS ALA ALA GLY THR ALA PRO SEQRES 8 A 259 SER GLY ALA HIS THR GLU PRO TRP THR PHE VAL VAL VAL SEQRES 9 A 259 LYS ASP PRO ASP MET LYS HIS LYS ILE ARG GLU ILE ILE SEQRES 10 A 259 GLU GLU GLU GLU GLU ILE ASN TYR MET LYS ARG MET GLY SEQRES 11 A 259 LYS ARG TRP VAL THR ASP LEU LYS LYS LEU ARG THR ASN SEQRES 12 A 259 TRP ILE LYS GLU TYR LEU ASP THR ALA PRO VAL LEU ILE SEQRES 13 A 259 LEU ILE PHE LYS GLN VAL HIS GLY PHE ALA ALA ASN GLY SEQRES 14 A 259 LYS LYS LYS VAL HIS TYR TYR ASN GLU ILE SER VAL SER SEQRES 15 A 259 ILE ALA ALA GLY LEU LEU LEU ALA ALA LEU GLN ASN ALA SEQRES 16 A 259 GLY LEU VAL THR VAL THR THR THR PRO LEU ASN ALA GLY SEQRES 17 A 259 PRO ARG LEU ARG VAL LEU LEU GLY ARG PRO SER HIS GLU SEQRES 18 A 259 LYS LEU LEU VAL LEU LEU PRO VAL GLY TYR PRO SER ARG SEQRES 19 A 259 ASP ALA THR VAL PRO ASP LEU LYS ARG LYS ALA LEU ASP SEQRES 20 A 259 GLN ILE MET VAL THR VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 259 MET ALA GLN VAL GLN PRO TRP VAL ASP GLU ASP LEU LYS SEQRES 2 B 259 ASP SER THR GLU ASP LEU GLN VAL GLU GLU ASP ALA GLU SEQRES 3 B 259 GLU TRP GLN GLU ALA GLU GLU SER VAL GLU HIS ILE PRO SEQRES 4 B 259 PHE SER HIS THR ARG TYR PRO GLU GLN GLU MET ARG MET SEQRES 5 B 259 ARG SER GLN GLU PHE TYR GLU LEU LEU ASN LYS ARG ARG SEQRES 6 B 259 SER VAL ARG PHE ILE SER SER GLU HIS VAL PRO MET GLU SEQRES 7 B 259 VAL ILE GLU ASN VAL ILE LYS ALA ALA GLY THR ALA PRO SEQRES 8 B 259 SER GLY ALA HIS THR GLU PRO TRP THR PHE VAL VAL VAL SEQRES 9 B 259 LYS ASP PRO ASP MET LYS HIS LYS ILE ARG GLU ILE ILE SEQRES 10 B 259 GLU GLU GLU GLU GLU ILE ASN TYR MET LYS ARG MET GLY SEQRES 11 B 259 LYS ARG TRP VAL THR ASP LEU LYS LYS LEU ARG THR ASN SEQRES 12 B 259 TRP ILE LYS GLU TYR LEU ASP THR ALA PRO VAL LEU ILE SEQRES 13 B 259 LEU ILE PHE LYS GLN VAL HIS GLY PHE ALA ALA ASN GLY SEQRES 14 B 259 LYS LYS LYS VAL HIS TYR TYR ASN GLU ILE SER VAL SER SEQRES 15 B 259 ILE ALA ALA GLY LEU LEU LEU ALA ALA LEU GLN ASN ALA SEQRES 16 B 259 GLY LEU VAL THR VAL THR THR THR PRO LEU ASN ALA GLY SEQRES 17 B 259 PRO ARG LEU ARG VAL LEU LEU GLY ARG PRO SER HIS GLU SEQRES 18 B 259 LYS LEU LEU VAL LEU LEU PRO VAL GLY TYR PRO SER ARG SEQRES 19 B 259 ASP ALA THR VAL PRO ASP LEU LYS ARG LYS ALA LEU ASP SEQRES 20 B 259 GLN ILE MET VAL THR VAL HIS HIS HIS HIS HIS HIS HET FMN A 301 31 HET IYR A 302 14 HET FLC A 303 13 HET GOL A 304 6 HET GOL B 304 6 HET FMN B 301 31 HET IYR B 302 14 HET FLC B 303 13 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM IYR 3-IODO-TYROSINE HETNAM FLC CITRATE ANION HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 IYR 2(C9 H10 I N O3) FORMUL 5 FLC 2(C6 H5 O7 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *298(H2 O) HELIX 1 1 PRO A 78 LYS A 95 1 18 HELIX 2 2 PRO A 108 GLY A 120 1 13 HELIX 3 3 SER A 124 THR A 128 5 5 HELIX 4 4 ASP A 138 LYS A 159 1 22 HELIX 5 5 GLY A 162 LYS A 170 1 9 HELIX 6 6 LYS A 171 ARG A 173 5 3 HELIX 7 7 GLU A 179 ALA A 184 1 6 HELIX 8 8 TYR A 208 ALA A 227 1 20 HELIX 9 9 ALA A 239 LEU A 247 1 9 HELIX 10 10 ALA A 277 GLN A 280 5 4 HELIX 11 11 PRO B 78 LYS B 95 1 18 HELIX 12 12 PRO B 108 GLY B 120 1 13 HELIX 13 13 SER B 124 THR B 128 5 5 HELIX 14 14 ASP B 138 LYS B 159 1 22 HELIX 15 15 GLY B 162 LYS B 170 1 9 HELIX 16 16 LYS B 171 ARG B 173 5 3 HELIX 17 17 GLU B 179 ALA B 184 1 6 HELIX 18 18 TYR B 208 ALA B 227 1 20 HELIX 19 19 ALA B 239 GLY B 248 1 10 HELIX 20 20 ALA B 277 GLN B 280 5 4 SHEET 1 A 2 HIS A 69 PRO A 71 0 SHEET 2 A 2 THR B 269 PRO B 271 -1 O VAL B 270 N ILE A 70 SHEET 1 B 4 GLU A 253 VAL A 261 0 SHEET 2 B 4 VAL A 186 GLN A 193 -1 N ILE A 188 O LEU A 259 SHEET 3 B 4 TRP A 131 VAL A 136 -1 N THR A 132 O PHE A 191 SHEET 4 B 4 MET B 282 THR B 284 1 O VAL B 283 N VAL A 135 SHEET 1 C 2 HIS A 195 PHE A 197 0 SHEET 2 C 2 LYS A 203 VAL A 205 -1 O LYS A 204 N GLY A 196 SHEET 1 D 2 THR A 269 PRO A 271 0 SHEET 2 D 2 HIS B 69 PRO B 71 -1 O ILE B 70 N VAL A 270 SHEET 1 E 4 MET A 282 THR A 284 0 SHEET 2 E 4 TRP B 131 VAL B 136 1 O VAL B 135 N VAL A 283 SHEET 3 E 4 VAL B 186 GLN B 193 -1 O PHE B 191 N THR B 132 SHEET 4 E 4 GLU B 253 VAL B 261 -1 O VAL B 261 N VAL B 186 SHEET 1 F 2 HIS B 195 PHE B 197 0 SHEET 2 F 2 LYS B 203 VAL B 205 -1 O LYS B 204 N GLY B 196 SITE 1 AC1 24 HOH A 9 HOH A 11 HOH A 30 ARG A 96 SITE 2 AC1 24 ARG A 97 SER A 98 ARG A 100 LEU A 172 SITE 3 AC1 24 THR A 174 VAL A 232 THR A 233 THR A 234 SITE 4 AC1 24 THR A 235 LEU A 273 ARG A 275 IYR A 302 SITE 5 AC1 24 HOH A 361 PRO B 123 SER B 124 GLY B 125 SITE 6 AC1 24 HIS B 127 TYR B 208 ILE B 211 SER B 212 SITE 1 AC2 10 GLU A 153 TYR A 157 LEU A 169 THR A 174 SITE 2 AC2 10 ASN A 175 LYS A 178 THR A 235 FMN A 301 SITE 3 AC2 10 HOH A 334 ALA B 126 SITE 1 AC3 6 HIS A 106 PRO A 108 MET A 109 HOH A 392 SITE 2 AC3 6 ARG B 83 HOH B 396 SITE 1 AC4 3 TYR A 207 TYR A 208 LEU B 237 SITE 1 AC5 3 LEU A 237 TYR B 207 TYR B 208 SITE 1 AC6 21 PRO A 123 SER A 124 GLY A 125 HIS A 127 SITE 2 AC6 21 TYR A 208 SER A 212 HOH B 10 HOH B 20 SITE 3 AC6 21 ARG B 96 ARG B 97 SER B 98 ARG B 100 SITE 4 AC6 21 THR B 174 VAL B 232 THR B 233 THR B 234 SITE 5 AC6 21 THR B 235 ARG B 275 HOH B 294 HOH B 295 SITE 6 AC6 21 IYR B 302 SITE 1 AC7 10 ALA A 126 GLU B 153 TYR B 157 LEU B 169 SITE 2 AC7 10 THR B 174 ASN B 175 LYS B 178 THR B 235 SITE 3 AC7 10 FMN B 301 HOH B 354 SITE 1 AC8 5 ARG A 83 HIS B 106 PRO B 108 MET B 109 SITE 2 AC8 5 HOH B 300 CRYST1 108.986 108.986 49.399 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009175 0.005297 0.000000 0.00000 SCALE2 0.000000 0.010595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020243 0.00000