HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-SEP-11 3TP4 TITLE CRYSTAL STRUCTURE OF ENGINEERED PROTEIN AT THE RESOLUTION 1.98A, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR128 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPUTATIONAL DESIGN OF ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, OR128, OSH97, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,M.SU,J.SEETHARAMAN,S.RAJAGOPALAN,J.K.EVERETT,R.NAIR, AUTHOR 2 T.B.ACTON,B.ROST,D.BAKER,G.T.MONTELIONE,J.F.HUNT,L.TONG,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 06-DEC-23 3TP4 1 REMARK REVDAT 4 13-SEP-23 3TP4 1 REMARK LINK REVDAT 3 14-MAY-14 3TP4 1 JRNL REVDAT 2 16-APR-14 3TP4 1 JRNL REVDAT 1 05-OCT-11 3TP4 0 JRNL AUTH S.RAJAGOPALAN,C.WANG,K.YU,A.P.KUZIN,F.RICHTER,S.LEW, JRNL AUTH 2 A.E.MIKLOS,M.L.MATTHEWS,J.SEETHARAMAN,M.SU,J.F.HUNT, JRNL AUTH 3 B.F.CRAVATT,D.BAKER JRNL TITL DESIGN OF ACTIVATED SERINE-CONTAINING CATALYTIC TRIADS WITH JRNL TITL 2 ATOMIC-LEVEL ACCURACY. JRNL REF NAT.CHEM.BIOL. V. 10 386 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 24705591 JRNL DOI 10.1038/NCHEMBIO.1498 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 81260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2592 - 6.0633 0.94 2764 147 0.1834 0.2221 REMARK 3 2 6.0633 - 4.8196 0.97 2704 152 0.1497 0.1864 REMARK 3 3 4.8196 - 4.2124 0.97 2679 163 0.1294 0.1347 REMARK 3 4 4.2124 - 3.8282 0.98 2723 132 0.1438 0.1983 REMARK 3 5 3.8282 - 3.5543 0.99 2701 142 0.1789 0.1885 REMARK 3 6 3.5543 - 3.3450 0.99 2701 136 0.1871 0.1999 REMARK 3 7 3.3450 - 3.1777 0.99 2712 145 0.1947 0.2578 REMARK 3 8 3.1777 - 3.0396 0.99 2730 129 0.1938 0.2830 REMARK 3 9 3.0396 - 2.9227 0.99 2673 147 0.1885 0.2288 REMARK 3 10 2.9227 - 2.8219 0.99 2696 138 0.1863 0.2248 REMARK 3 11 2.8219 - 2.7337 0.99 2695 135 0.1747 0.2154 REMARK 3 12 2.7337 - 2.6556 0.99 2677 153 0.1698 0.2531 REMARK 3 13 2.6556 - 2.5858 0.99 2684 151 0.1823 0.2081 REMARK 3 14 2.5858 - 2.5227 1.00 2717 134 0.1916 0.2254 REMARK 3 15 2.5227 - 2.4654 1.00 2683 150 0.1932 0.2613 REMARK 3 16 2.4654 - 2.4129 1.00 2696 128 0.1883 0.2157 REMARK 3 17 2.4129 - 2.3647 1.00 2684 137 0.1723 0.2251 REMARK 3 18 2.3647 - 2.3201 1.00 2720 140 0.1888 0.2463 REMARK 3 19 2.3201 - 2.2787 1.00 2664 150 0.2018 0.2736 REMARK 3 20 2.2787 - 2.2401 1.00 2683 141 0.2101 0.2555 REMARK 3 21 2.2401 - 2.2039 1.00 2718 118 0.2022 0.2860 REMARK 3 22 2.2039 - 2.1700 1.00 2654 157 0.1936 0.2459 REMARK 3 23 2.1700 - 2.1381 1.00 2718 141 0.1992 0.2455 REMARK 3 24 2.1381 - 2.1080 1.00 2661 142 0.2026 0.2638 REMARK 3 25 2.1080 - 2.0796 1.00 2736 123 0.2112 0.2672 REMARK 3 26 2.0796 - 2.0526 1.00 2654 151 0.2219 0.2563 REMARK 3 27 2.0526 - 2.0269 1.00 2643 164 0.2403 0.2623 REMARK 3 28 2.0269 - 2.0025 0.99 2636 140 0.2572 0.3113 REMARK 3 29 2.0025 - 1.9792 0.66 1780 88 0.3056 0.3410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 46.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.54160 REMARK 3 B22 (A**2) : -0.20650 REMARK 3 B33 (A**2) : -4.33510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6945 REMARK 3 ANGLE : 1.005 9499 REMARK 3 CHIRALITY : 0.069 1068 REMARK 3 PLANARITY : 0.004 1256 REMARK 3 DIHEDRAL : 13.143 2330 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.7166 -5.9576 2.5477 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1430 REMARK 3 T33: 0.1359 T12: -0.0090 REMARK 3 T13: 0.0159 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.2603 L22: 0.4673 REMARK 3 L33: 0.2885 L12: 0.0341 REMARK 3 L13: -0.0594 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0198 S13: 0.0123 REMARK 3 S21: -0.0073 S22: 0.0049 S23: -0.0575 REMARK 3 S31: 0.0073 S32: 0.0010 S33: 0.0106 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.979 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2BVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5) . RESERVOIR SOLUTION: REMARK 280 NAACETATE - 0.2M, NACACODYLATE 0.1M, PEG8K - 30%, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.33300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.40750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.97150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.40750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.33300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.97150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 THR A 126 REMARK 465 SER A 127 REMARK 465 GLY A 128 REMARK 465 THR A 436 REMARK 465 SER A 437 REMARK 465 ALA A 438 REMARK 465 GLN A 439 REMARK 465 LEU A 440 REMARK 465 ASP A 441 REMARK 465 ASN A 442 REMARK 465 SER A 443 REMARK 465 LEU A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 119 REMARK 465 GLY B 120 REMARK 465 ASP B 125 REMARK 465 THR B 126 REMARK 465 SER B 127 REMARK 465 ALA B 438 REMARK 465 GLN B 439 REMARK 465 LEU B 440 REMARK 465 ASP B 441 REMARK 465 GLU B 469 REMARK 465 HIS B 470 REMARK 465 HIS B 471 REMARK 465 HIS B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 228 O HOH A 734 2.06 REMARK 500 O THR B 391 O HOH B 833 2.11 REMARK 500 O GLY B 412 N THR B 414 2.17 REMARK 500 O HOH A 650 O HOH A 746 2.18 REMARK 500 O HOH B 501 O HOH B 654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 612 O HOH B 833 4445 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 17.64 -144.53 REMARK 500 THR A 119 -74.51 -38.40 REMARK 500 TRP A 173 77.05 72.87 REMARK 500 ALA A 426 -42.52 -137.39 REMARK 500 LEU A 427 -42.87 -155.33 REMARK 500 TYR A 445 -54.92 -155.91 REMARK 500 ASP B 50 15.29 -146.76 REMARK 500 SER B 122 58.70 21.30 REMARK 500 ASP B 129 -127.61 58.79 REMARK 500 TRP B 173 79.08 55.22 REMARK 500 ALA B 426 -35.63 -138.30 REMARK 500 LEU B 427 -49.59 -153.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 476 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 347 O REMARK 620 2 ASP B 349 O 109.1 REMARK 620 3 THR B 352 O 147.5 101.5 REMARK 620 4 THR B 352 OG1 90.6 88.4 79.4 REMARK 620 5 HOH B 810 O 83.3 125.6 87.8 145.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 478 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BVY RELATED DB: PDB REMARK 900 97% HOMOLOGY REMARK 900 RELATED ID: OR128 RELATED DB: TARGETDB DBREF 3TP4 A 1 475 PDB 3TP4 3TP4 1 475 DBREF 3TP4 B 1 475 PDB 3TP4 3TP4 1 475 SEQRES 1 A 475 MSE ALA ASP GLU THR ILE ALA ILE VAL ASP ALA ASP ALA SEQRES 2 A 475 THR ALA GLU THR ARG SER LEU LEU SER TYR LEU ASP GLY SEQRES 3 A 475 VAL ARG GLY GLU GLY ILE LEU PHE GLY HIS HIS GLY THR SEQRES 4 A 475 THR SER SER GLY LEU THR THR GLY PRO THR ASP GLY THR SEQRES 5 A 475 THR SER ASP VAL LYS ASN VAL THR GLY ASP PHE PRO ALA SEQRES 6 A 475 VAL PHE GLY TRP SER THR SER ILE ILE GLU GLY ASN GLN SEQRES 7 A 475 ARG PRO GLY LEU ALA GLU ASN THR ARG ASP GLU ASN ILE SEQRES 8 A 475 ALA LEU PHE ALA ASP TYR ILE ARG LYS ALA ASP ALA ILE SEQRES 9 A 475 GLY GLY VAL ASN THR VAL GLY ALA GLY VAL GLU ASN PHE SEQRES 10 A 475 VAL THR GLY GLY SER PHE TYR ASP THR SER GLY ASP THR SEQRES 11 A 475 LEU ARG ALA VAL LEU PRO GLY GLY SER HIS HIS ALA GLU SEQRES 12 A 475 LEU VAL ALA TYR LEU ASP ASP ILE ALA GLU LEU ALA ASP SEQRES 13 A 475 ALA SER ARG ARG ASP ASP GLY THR LEU ILE PRO ILE VAL SEQRES 14 A 475 PHE ARG PRO TRP HIS GLU ASN ALA GLY SER TRP PHE TRP SEQRES 15 A 475 TRP GLY ALA ALA TYR GLY SER PRO GLY GLU TYR GLN GLU SEQRES 16 A 475 LEU TYR ARG PHE THR VAL GLU TYR LEU ARG ASP VAL LYS SEQRES 17 A 475 GLY VAL SER ASN PHE LEU TYR ALA TRP GLY PRO GLY GLY SEQRES 18 A 475 GLY PHE GLY GLY ASN ARG ASP VAL TYR LEU ARG THR TYR SEQRES 19 A 475 PRO GLY ASP ALA PHE VAL ASP VAL LEU GLY LEU ASP THR SEQRES 20 A 475 TYR ASP SER THR GLY SER ASP ALA PHE LEU ALA GLY LEU SEQRES 21 A 475 VAL ALA ASP LEU ARG MSE ILE ALA GLU ILE ALA ASP GLU SEQRES 22 A 475 LYS GLY LYS VAL SER ALA PHE THR ARG PHE GLY VAL SER SEQRES 23 A 475 GLY GLY VAL GLY THR ASN GLY SER SER PRO ALA GLN TRP SEQRES 24 A 475 PHE THR LYS VAL LEU ALA ALA ILE LYS ALA ASP PRO VAL SEQRES 25 A 475 ALA SER ARG ASN ALA TYR MSE GLU THR GLY GLU ASN ALA SEQRES 26 A 475 ASP ALA GLY GLN HIS PHE VAL PRO VAL PRO GLY ASP ALA SEQRES 27 A 475 LEU LEU GLU ASP PHE GLN ALA TYR ALA ALA ASP PRO PHE SEQRES 28 A 475 THR LEU PHE ALA SER GLU VAL THR GLY ALA PHE ASP ARG SEQRES 29 A 475 THR VAL ALA ALA ALA PRO ALA GLN PRO VAL VAL HIS ILE SEQRES 30 A 475 ALA SER PRO ALA ASP GLY ALA ARG VAL ALA SER ALA PRO SEQRES 31 A 475 THR THR VAL ARG VAL ARG VAL GLY GLY THR ASP VAL GLN SEQRES 32 A 475 SER VAL THR VAL GLU VAL ALA GLN GLY GLY THR VAL VAL SEQRES 33 A 475 ASP THR LEU ASP LEU ALA TYR ASP GLY ALA LEU TRP TRP SEQRES 34 A 475 THR ALA PRO TRP SER PRO THR SER ALA GLN LEU ASP ASN SEQRES 35 A 475 SER THR TYR THR VAL THR ALA THR ALA THR THR ALA ALA SEQRES 36 A 475 GLY THR LEU ASP VAL THR ASN GLU VAL ALA ALA ALA LEU SEQRES 37 A 475 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 475 MSE ALA ASP GLU THR ILE ALA ILE VAL ASP ALA ASP ALA SEQRES 2 B 475 THR ALA GLU THR ARG SER LEU LEU SER TYR LEU ASP GLY SEQRES 3 B 475 VAL ARG GLY GLU GLY ILE LEU PHE GLY HIS HIS GLY THR SEQRES 4 B 475 THR SER SER GLY LEU THR THR GLY PRO THR ASP GLY THR SEQRES 5 B 475 THR SER ASP VAL LYS ASN VAL THR GLY ASP PHE PRO ALA SEQRES 6 B 475 VAL PHE GLY TRP SER THR SER ILE ILE GLU GLY ASN GLN SEQRES 7 B 475 ARG PRO GLY LEU ALA GLU ASN THR ARG ASP GLU ASN ILE SEQRES 8 B 475 ALA LEU PHE ALA ASP TYR ILE ARG LYS ALA ASP ALA ILE SEQRES 9 B 475 GLY GLY VAL ASN THR VAL GLY ALA GLY VAL GLU ASN PHE SEQRES 10 B 475 VAL THR GLY GLY SER PHE TYR ASP THR SER GLY ASP THR SEQRES 11 B 475 LEU ARG ALA VAL LEU PRO GLY GLY SER HIS HIS ALA GLU SEQRES 12 B 475 LEU VAL ALA TYR LEU ASP ASP ILE ALA GLU LEU ALA ASP SEQRES 13 B 475 ALA SER ARG ARG ASP ASP GLY THR LEU ILE PRO ILE VAL SEQRES 14 B 475 PHE ARG PRO TRP HIS GLU ASN ALA GLY SER TRP PHE TRP SEQRES 15 B 475 TRP GLY ALA ALA TYR GLY SER PRO GLY GLU TYR GLN GLU SEQRES 16 B 475 LEU TYR ARG PHE THR VAL GLU TYR LEU ARG ASP VAL LYS SEQRES 17 B 475 GLY VAL SER ASN PHE LEU TYR ALA TRP GLY PRO GLY GLY SEQRES 18 B 475 GLY PHE GLY GLY ASN ARG ASP VAL TYR LEU ARG THR TYR SEQRES 19 B 475 PRO GLY ASP ALA PHE VAL ASP VAL LEU GLY LEU ASP THR SEQRES 20 B 475 TYR ASP SER THR GLY SER ASP ALA PHE LEU ALA GLY LEU SEQRES 21 B 475 VAL ALA ASP LEU ARG MSE ILE ALA GLU ILE ALA ASP GLU SEQRES 22 B 475 LYS GLY LYS VAL SER ALA PHE THR ARG PHE GLY VAL SER SEQRES 23 B 475 GLY GLY VAL GLY THR ASN GLY SER SER PRO ALA GLN TRP SEQRES 24 B 475 PHE THR LYS VAL LEU ALA ALA ILE LYS ALA ASP PRO VAL SEQRES 25 B 475 ALA SER ARG ASN ALA TYR MSE GLU THR GLY GLU ASN ALA SEQRES 26 B 475 ASP ALA GLY GLN HIS PHE VAL PRO VAL PRO GLY ASP ALA SEQRES 27 B 475 LEU LEU GLU ASP PHE GLN ALA TYR ALA ALA ASP PRO PHE SEQRES 28 B 475 THR LEU PHE ALA SER GLU VAL THR GLY ALA PHE ASP ARG SEQRES 29 B 475 THR VAL ALA ALA ALA PRO ALA GLN PRO VAL VAL HIS ILE SEQRES 30 B 475 ALA SER PRO ALA ASP GLY ALA ARG VAL ALA SER ALA PRO SEQRES 31 B 475 THR THR VAL ARG VAL ARG VAL GLY GLY THR ASP VAL GLN SEQRES 32 B 475 SER VAL THR VAL GLU VAL ALA GLN GLY GLY THR VAL VAL SEQRES 33 B 475 ASP THR LEU ASP LEU ALA TYR ASP GLY ALA LEU TRP TRP SEQRES 34 B 475 THR ALA PRO TRP SER PRO THR SER ALA GLN LEU ASP ASN SEQRES 35 B 475 SER THR TYR THR VAL THR ALA THR ALA THR THR ALA ALA SEQRES 36 B 475 GLY THR LEU ASP VAL THR ASN GLU VAL ALA ALA ALA LEU SEQRES 37 B 475 GLU HIS HIS HIS HIS HIS HIS MODRES 3TP4 MSE A 266 MET SELENOMETHIONINE MODRES 3TP4 MSE A 319 MET SELENOMETHIONINE MODRES 3TP4 MSE B 266 MET SELENOMETHIONINE MODRES 3TP4 MSE B 319 MET SELENOMETHIONINE HET MSE A 266 8 HET MSE A 319 8 HET MSE B 266 8 HET MSE B 319 8 HET ACY A 476 4 HET MG B 476 1 HET ACY B 477 4 HET PEG B 478 7 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ACY 2(C2 H4 O2) FORMUL 4 MG MG 2+ FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *735(H2 O) HELIX 1 1 THR A 14 ARG A 28 1 15 HELIX 2 2 SER A 54 GLY A 61 1 8 HELIX 3 3 SER A 72 ILE A 74 5 3 HELIX 4 4 THR A 86 GLY A 105 1 20 HELIX 5 5 GLU A 115 VAL A 118 5 4 HELIX 6 6 THR A 130 LEU A 135 1 6 HELIX 7 7 HIS A 140 SER A 158 1 19 HELIX 8 8 TRP A 183 SER A 189 1 7 HELIX 9 9 SER A 189 VAL A 207 1 19 HELIX 10 10 ASN A 226 LEU A 231 1 6 HELIX 11 11 ARG A 232 TYR A 234 5 3 HELIX 12 12 SER A 253 GLY A 275 1 23 HELIX 13 13 GLN A 298 ALA A 309 1 12 HELIX 14 14 LEU A 339 ASP A 349 1 11 HELIX 15 15 PHE A 354 VAL A 358 5 5 HELIX 16 16 THR B 14 VAL B 27 1 14 HELIX 17 17 SER B 54 GLY B 61 1 8 HELIX 18 18 SER B 72 GLY B 76 5 5 HELIX 19 19 THR B 86 GLY B 105 1 20 HELIX 20 20 GLU B 115 VAL B 118 5 4 HELIX 21 21 ASP B 129 LEU B 135 1 7 HELIX 22 22 HIS B 140 SER B 158 1 19 HELIX 23 23 TRP B 183 SER B 189 1 7 HELIX 24 24 SER B 189 VAL B 207 1 19 HELIX 25 25 ASN B 226 LEU B 231 1 6 HELIX 26 26 ARG B 232 TYR B 234 5 3 HELIX 27 27 SER B 253 GLY B 275 1 23 HELIX 28 28 GLN B 298 ASP B 310 1 13 HELIX 29 29 LEU B 339 ASP B 349 1 11 HELIX 30 30 PHE B 354 VAL B 358 5 5 SHEET 1 A 2 GLU A 4 ILE A 6 0 SHEET 2 A 2 VAL A 366 ALA A 368 1 O ALA A 367 N GLU A 4 SHEET 1 B 8 VAL A 277 SER A 278 0 SHEET 2 B 8 VAL A 242 LEU A 243 1 N LEU A 243 O VAL A 277 SHEET 3 B 8 PHE A 213 TRP A 217 1 N TRP A 217 O VAL A 242 SHEET 4 B 8 ILE A 168 HIS A 174 1 N PHE A 170 O LEU A 214 SHEET 5 B 8 VAL A 107 GLY A 113 1 N VAL A 110 O ARG A 171 SHEET 6 B 8 VAL A 66 SER A 70 1 N PHE A 67 O VAL A 107 SHEET 7 B 8 ILE A 32 HIS A 37 1 N HIS A 36 O GLY A 68 SHEET 8 B 8 TYR A 318 THR A 321 1 O MSE A 319 N GLY A 35 SHEET 1 C 8 VAL A 277 SER A 278 0 SHEET 2 C 8 VAL A 242 LEU A 243 1 N LEU A 243 O VAL A 277 SHEET 3 C 8 PHE A 213 TRP A 217 1 N TRP A 217 O VAL A 242 SHEET 4 C 8 ILE A 168 HIS A 174 1 N PHE A 170 O LEU A 214 SHEET 5 C 8 VAL A 107 GLY A 113 1 N VAL A 110 O ARG A 171 SHEET 6 C 8 VAL A 66 SER A 70 1 N PHE A 67 O VAL A 107 SHEET 7 C 8 ILE A 32 HIS A 37 1 N HIS A 36 O GLY A 68 SHEET 8 C 8 THR A 352 LEU A 353 1 O LEU A 353 N PHE A 34 SHEET 1 D 2 ASP A 246 ASP A 249 0 SHEET 2 D 2 ARG A 282 VAL A 285 1 O ARG A 282 N THR A 247 SHEET 1 E 4 VAL A 374 SER A 379 0 SHEET 2 E 4 THR A 391 GLY A 398 -1 O ARG A 394 N SER A 379 SHEET 3 E 4 TRP A 429 TRP A 433 -1 O ALA A 431 N VAL A 393 SHEET 4 E 4 ALA A 422 TYR A 423 -1 N ALA A 422 O THR A 430 SHEET 1 F 2 ARG A 385 VAL A 386 0 SHEET 2 F 2 ALA A 465 ALA A 466 1 O ALA A 465 N VAL A 386 SHEET 1 G 4 THR A 414 ASP A 420 0 SHEET 2 G 4 VAL A 402 GLN A 411 -1 N VAL A 409 O ASP A 417 SHEET 3 G 4 THR A 446 THR A 453 -1 O THR A 452 N GLN A 403 SHEET 4 G 4 GLY A 456 GLU A 463 -1 O ASN A 462 N VAL A 447 SHEET 1 H 2 GLU B 4 ILE B 6 0 SHEET 2 H 2 VAL B 366 ALA B 368 1 O ALA B 367 N GLU B 4 SHEET 1 I 8 VAL B 277 SER B 278 0 SHEET 2 I 8 VAL B 242 LEU B 243 1 N LEU B 243 O VAL B 277 SHEET 3 I 8 PHE B 213 TRP B 217 1 N TRP B 217 O VAL B 242 SHEET 4 I 8 ILE B 168 HIS B 174 1 N PHE B 170 O ALA B 216 SHEET 5 I 8 VAL B 107 GLY B 113 1 N VAL B 110 O ARG B 171 SHEET 6 I 8 VAL B 66 SER B 70 1 N PHE B 67 O VAL B 107 SHEET 7 I 8 ILE B 32 HIS B 37 1 N HIS B 36 O GLY B 68 SHEET 8 I 8 TYR B 318 THR B 321 1 O MSE B 319 N GLY B 35 SHEET 1 J 8 VAL B 277 SER B 278 0 SHEET 2 J 8 VAL B 242 LEU B 243 1 N LEU B 243 O VAL B 277 SHEET 3 J 8 PHE B 213 TRP B 217 1 N TRP B 217 O VAL B 242 SHEET 4 J 8 ILE B 168 HIS B 174 1 N PHE B 170 O ALA B 216 SHEET 5 J 8 VAL B 107 GLY B 113 1 N VAL B 110 O ARG B 171 SHEET 6 J 8 VAL B 66 SER B 70 1 N PHE B 67 O VAL B 107 SHEET 7 J 8 ILE B 32 HIS B 37 1 N HIS B 36 O GLY B 68 SHEET 8 J 8 THR B 352 LEU B 353 1 O LEU B 353 N PHE B 34 SHEET 1 K 2 ASP B 246 ASP B 249 0 SHEET 2 K 2 ARG B 282 VAL B 285 1 O ARG B 282 N THR B 247 SHEET 1 L 4 VAL B 374 SER B 379 0 SHEET 2 L 4 THR B 391 GLY B 398 -1 O ARG B 396 N HIS B 376 SHEET 3 L 4 TRP B 429 TRP B 433 -1 O TRP B 429 N VAL B 395 SHEET 4 L 4 ALA B 422 TYR B 423 -1 N ALA B 422 O THR B 430 SHEET 1 M 5 ARG B 385 VAL B 386 0 SHEET 2 M 5 GLY B 456 ALA B 466 1 O ALA B 465 N VAL B 386 SHEET 3 M 5 THR B 444 THR B 453 -1 N ALA B 451 O LEU B 458 SHEET 4 M 5 VAL B 402 ALA B 410 -1 N ALA B 410 O THR B 446 SHEET 5 M 5 VAL B 415 ASP B 420 -1 O VAL B 416 N VAL B 409 LINK C ARG A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N ILE A 267 1555 1555 1.33 LINK C TYR A 318 N MSE A 319 1555 1555 1.33 LINK C MSE A 319 N GLU A 320 1555 1555 1.33 LINK C ARG B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N ILE B 267 1555 1555 1.34 LINK C TYR B 318 N MSE B 319 1555 1555 1.33 LINK C MSE B 319 N GLU B 320 1555 1555 1.33 LINK O ALA B 347 MG MG B 476 1555 1555 2.36 LINK O ASP B 349 MG MG B 476 1555 1555 2.27 LINK O THR B 352 MG MG B 476 1555 1555 2.37 LINK OG1 THR B 352 MG MG B 476 1555 1555 2.38 LINK MG MG B 476 O HOH B 810 1555 1555 2.55 CISPEP 1 ARG A 79 PRO A 80 0 5.15 CISPEP 2 ALA A 177 GLY A 178 0 -11.53 CISPEP 3 SER A 379 PRO A 380 0 -0.44 CISPEP 4 ALA A 389 PRO A 390 0 -2.76 CISPEP 5 ARG B 79 PRO B 80 0 5.14 CISPEP 6 SER B 122 PHE B 123 0 -12.08 CISPEP 7 ALA B 177 GLY B 178 0 7.72 CISPEP 8 SER B 379 PRO B 380 0 1.86 SITE 1 AC1 4 ALA B 347 ASP B 349 THR B 352 HOH B 810 SITE 1 AC2 4 SER A 179 TRP A 180 PHE A 181 HOH B 788 SITE 1 AC3 5 GLY B 236 ASP B 237 ALA B 238 HOH B 560 SITE 2 AC3 5 HOH B 740 SITE 1 AC4 7 PHE B 117 VAL B 118 ASP B 129 THR B 130 SITE 2 AC4 7 TRP B 183 ALA B 185 HOH B 811 CRYST1 88.666 113.943 116.815 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008561 0.00000