HEADER HYDROLASE 07-SEP-11 3TP6 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS TITLE 2 L36E/L103K AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE A (UNP RESIDUES 83-231); COMPND 5 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 6 EC: 3.1.31.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS STAPHYLOCOCCAL NUCLEASE, HYPERSTABLE, PDTP, IONIZABLE GROUP, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ROBINSON,J.L.SCHLESSMAN,B.GARCIA-MORENO E. REVDAT 3 13-SEP-23 3TP6 1 REMARK SEQADV LINK REVDAT 2 06-MAR-13 3TP6 1 JRNL TITLE REVDAT 1 21-SEP-11 3TP6 0 JRNL AUTH A.C.ROBINSON,J.L.SCHLESSMAN,B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+PHS L36E/L103K AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1093 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1470 ; 1.509 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 131 ; 6.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;34.159 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 215 ;16.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 793 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 647 ; 1.230 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1036 ; 2.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 446 ; 3.307 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 433 ; 5.018 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5620 -2.1490 -8.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.1062 REMARK 3 T33: 0.1957 T12: 0.0038 REMARK 3 T13: -0.1530 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 7.1087 L22: 27.8553 REMARK 3 L33: 4.5442 L12: -1.3713 REMARK 3 L13: -0.6054 L23: -5.9923 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.5029 S13: 0.1317 REMARK 3 S21: -1.7463 S22: 0.4470 S23: 1.9776 REMARK 3 S31: 0.1734 S32: -0.3182 S33: -0.5116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1490 -4.1750 5.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.0996 REMARK 3 T33: 0.1274 T12: 0.0280 REMARK 3 T13: -0.0155 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.3236 L22: 2.2211 REMARK 3 L33: 1.7817 L12: -1.0210 REMARK 3 L13: -0.2771 L23: 0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: -0.1350 S13: -0.0968 REMARK 3 S21: 0.2050 S22: 0.1462 S23: -0.2742 REMARK 3 S31: 0.0669 S32: 0.1015 S33: -0.0852 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8570 -3.9490 0.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1038 REMARK 3 T33: 0.1541 T12: 0.0181 REMARK 3 T13: 0.0011 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.1998 L22: 5.5608 REMARK 3 L33: -0.9893 L12: -2.3754 REMARK 3 L13: -0.5417 L23: 0.1014 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.1370 S13: -0.0590 REMARK 3 S21: 0.0479 S22: -0.0107 S23: -0.3870 REMARK 3 S31: 0.0187 S32: -0.0447 S33: -0.0341 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4730 9.6790 8.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.1848 REMARK 3 T33: 0.0658 T12: 0.0043 REMARK 3 T13: -0.0222 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.0757 L22: 3.5928 REMARK 3 L33: 6.0126 L12: -0.0656 REMARK 3 L13: -1.2378 L23: -1.4847 REMARK 3 S TENSOR REMARK 3 S11: -0.2187 S12: -0.4700 S13: 0.1095 REMARK 3 S21: 0.2034 S22: -0.1269 S23: -0.1207 REMARK 3 S31: -0.1221 S32: 0.7723 S33: 0.3456 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9450 5.2830 16.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.1285 T22: 0.2301 REMARK 3 T33: 0.0116 T12: 0.0139 REMARK 3 T13: -0.0246 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 2.7454 L22: 8.9486 REMARK 3 L33: 5.9936 L12: 1.6422 REMARK 3 L13: 0.8959 L23: 2.6630 REMARK 3 S TENSOR REMARK 3 S11: -0.1350 S12: -0.6040 S13: -0.0700 REMARK 3 S21: 0.3334 S22: -0.0237 S23: -0.2265 REMARK 3 S31: -0.1191 S32: 0.3816 S33: 0.1587 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5770 -3.3440 0.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.1030 REMARK 3 T33: 0.1422 T12: -0.0029 REMARK 3 T13: -0.0007 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.5237 L22: 2.5807 REMARK 3 L33: 3.1897 L12: -0.7663 REMARK 3 L13: 0.4967 L23: 0.1845 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0531 S13: -0.2982 REMARK 3 S21: 0.0534 S22: 0.0373 S23: 0.1774 REMARK 3 S31: 0.1368 S32: -0.1528 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9650 2.5970 1.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1063 REMARK 3 T33: 0.1026 T12: -0.0003 REMARK 3 T13: 0.0042 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.3918 L22: 2.0119 REMARK 3 L33: 0.3737 L12: -0.2240 REMARK 3 L13: 0.6872 L23: 0.6569 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: 0.0546 S13: -0.0680 REMARK 3 S21: 0.0774 S22: 0.0776 S23: 0.0353 REMARK 3 S31: 0.0561 S32: -0.0464 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9500 11.2100 1.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1116 REMARK 3 T33: 0.1145 T12: -0.0034 REMARK 3 T13: -0.0201 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.1553 L22: 2.4038 REMARK 3 L33: 0.7242 L12: -0.3856 REMARK 3 L13: -0.1724 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0710 S13: 0.1768 REMARK 3 S21: -0.1410 S22: 0.0112 S23: 0.0995 REMARK 3 S31: -0.0283 S32: -0.0077 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9240 15.0500 11.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.1077 REMARK 3 T33: 0.1083 T12: 0.0204 REMARK 3 T13: 0.0298 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.8502 L22: 1.4763 REMARK 3 L33: 5.4619 L12: -1.0744 REMARK 3 L13: 1.2116 L23: 0.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: -0.4571 S13: 0.2615 REMARK 3 S21: 0.2311 S22: 0.0980 S23: 0.1896 REMARK 3 S31: -0.2794 S32: -0.1033 S33: 0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3TP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GE111 REMARK 200 OPTICS : MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER APEX II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP 2008/2 FOR WINDOWS, APEX REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 60.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.93 REMARK 200 R MERGE (I) : 0.02340 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.75 REMARK 200 R MERGE FOR SHELL (I) : 0.17030 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.1 REMARK 200 STARTING MODEL: PDB ENTRY 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.23600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -73.80 -114.90 REMARK 500 ASP A 19 -151.75 -148.99 REMARK 500 LYS A 28 41.20 39.36 REMARK 500 TYR A 54 -2.79 77.46 REMARK 500 ASN A 119 29.22 -142.30 REMARK 500 ASN A 138 -108.92 57.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 150 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 ASP A 40 OD1 87.6 REMARK 620 3 THP A 151 O5P 103.5 71.9 REMARK 620 4 HOH A 175 O 79.5 145.6 80.1 REMARK 620 5 HOH A 197 O 118.9 153.0 103.8 53.4 REMARK 620 6 HOH A 201 O 79.7 134.1 153.9 75.0 54.5 REMARK 620 7 HOH A 217 O 125.6 55.9 101.3 152.6 100.5 97.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDC RELATED DB: PDB REMARK 900 RELATED ID: 3ES5 RELATED DB: PDB DBREF 3TP6 A 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 3TP6 GLU A 36 UNP P00644 LEU 118 ENGINEERED MUTATION SEQADV 3TP6 A UNP P00644 THR 126 DELETION SEQADV 3TP6 A UNP P00644 LYS 127 DELETION SEQADV 3TP6 A UNP P00644 HIS 128 DELETION SEQADV 3TP6 A UNP P00644 PRO 129 DELETION SEQADV 3TP6 A UNP P00644 LYS 130 DELETION SEQADV 3TP6 A UNP P00644 LYS 131 DELETION SEQADV 3TP6 PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 3TP6 ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 3TP6 LYS A 103 UNP P00644 LEU 185 ENGINEERED MUTATION SEQADV 3TP6 GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 3TP6 LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 3TP6 ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG GLU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LYS VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET CA A 150 1 HET THP A 151 25 HETNAM CA CALCIUM ION HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 2 CA CA 2+ FORMUL 3 THP C10 H16 N2 O11 P2 FORMUL 4 HOH *94(H2 O) HELIX 1 1 TYR A 54 ALA A 69 1 16 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 HIS A 121 GLU A 135 1 15 HELIX 4 4 LEU A 137 SER A 141 5 5 SHEET 1 A 7 LYS A 97 MET A 98 0 SHEET 2 A 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 A 7 ILE A 72 GLU A 75 -1 N GLU A 73 O TYR A 93 SHEET 4 A 7 LYS A 9 ALA A 17 -1 N GLU A 10 O VAL A 74 SHEET 5 A 7 THR A 22 TYR A 27 -1 O LYS A 24 N ILE A 15 SHEET 6 A 7 GLN A 30 GLU A 36 -1 O PHE A 34 N VAL A 23 SHEET 7 A 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 B 2 VAL A 39 ASP A 40 0 SHEET 2 B 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 LINK OD2 ASP A 21 CA CA A 150 1555 1555 2.80 LINK OD1 ASP A 40 CA CA A 150 1555 1555 2.94 LINK CA CA A 150 O5P THP A 151 1555 1555 2.92 LINK CA CA A 150 O HOH A 175 1555 1555 2.93 LINK CA CA A 150 O HOH A 197 1555 1555 2.56 LINK CA CA A 150 O HOH A 201 1555 1555 2.93 LINK CA CA A 150 O HOH A 217 1555 1555 2.85 SITE 1 AC1 9 ASP A 21 ASP A 40 THR A 41 GLU A 43 SITE 2 AC1 9 THP A 151 HOH A 175 HOH A 197 HOH A 201 SITE 3 AC1 9 HOH A 217 SITE 1 AC2 22 ARG A 35 ASP A 40 LYS A 84 TYR A 85 SITE 2 AC2 22 ARG A 87 LEU A 89 TYR A 113 TYR A 115 SITE 3 AC2 22 LYS A 127 CA A 150 HOH A 157 HOH A 162 SITE 4 AC2 22 HOH A 173 HOH A 175 HOH A 177 HOH A 185 SITE 5 AC2 22 HOH A 191 HOH A 203 HOH A 210 HOH A 225 SITE 6 AC2 22 HOH A 240 HOH A 241 CRYST1 31.178 60.472 38.063 90.00 93.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032074 0.000000 0.002158 0.00000 SCALE2 0.000000 0.016537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026332 0.00000