data_3TPK # _entry.id 3TPK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TPK pdb_00003tpk 10.2210/pdb3tpk/pdb RCSB RCSB067762 ? ? WWPDB D_1000067762 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2013-11-27 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-13 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3TPK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parthier, C.' 1 'Morgado, I.' 2 'Stubbs, M.T.' 3 'Fandrich, M.' 4 # _citation.id primary _citation.title 'Molecular basis of beta-amyloid oligomer recognition with a conformational antibody fragment.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 12503 _citation.page_last 12508 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22814377 _citation.pdbx_database_id_DOI 10.1073/pnas.1206433109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morgado, I.' 1 ? primary 'Wieligmann, K.' 2 ? primary 'Bereza, M.' 3 ? primary 'Ronicke, R.' 4 ? primary 'Meinhardt, K.' 5 ? primary 'Annamalai, K.' 6 ? primary 'Baumann, M.' 7 ? primary 'Wacker, J.' 8 ? primary 'Hortschansky, P.' 9 ? primary 'Malesevic, M.' 10 ? primary 'Parthier, C.' 11 ? primary 'Mawrin, C.' 12 ? primary 'Schiene-Fischer, C.' 13 ? primary 'Reymann, K.G.' 14 ? primary 'Stubbs, M.T.' 15 ? primary 'Balbach, J.' 16 ? primary 'Gorlach, M.' 17 ? primary 'Horn, U.' 18 ? primary 'Fandrich, M.' 19 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Immunoglobulin heavy chain antibody variable domain KW1' 15102.599 1 ? ? ? ? 2 non-polymer syn BENZAMIDINE 120.152 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 113 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DYKDEVQLVESGGGSVQPGGSLRLSCTASGYTFSQEFVIWFRQAPGKEREIVSGISLRKGWTYYADSVKGRFTISQDNAK NTVYLQMNNLKPEDTAMYYCAAAPTATHALYFDYWGQGTQVTVSSASGADHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;DYKDEVQLVESGGGSVQPGGSLRLSCTASGYTFSQEFVIWFRQAPGKEREIVSGISLRKGWTYYADSVKGRFTISQDNAK NTVYLQMNNLKPEDTAMYYCAAAPTATHALYFDYWGQGTQVTVSSASGADHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BENZAMIDINE BEN 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 TYR n 1 3 LYS n 1 4 ASP n 1 5 GLU n 1 6 VAL n 1 7 GLN n 1 8 LEU n 1 9 VAL n 1 10 GLU n 1 11 SER n 1 12 GLY n 1 13 GLY n 1 14 GLY n 1 15 SER n 1 16 VAL n 1 17 GLN n 1 18 PRO n 1 19 GLY n 1 20 GLY n 1 21 SER n 1 22 LEU n 1 23 ARG n 1 24 LEU n 1 25 SER n 1 26 CYS n 1 27 THR n 1 28 ALA n 1 29 SER n 1 30 GLY n 1 31 TYR n 1 32 THR n 1 33 PHE n 1 34 SER n 1 35 GLN n 1 36 GLU n 1 37 PHE n 1 38 VAL n 1 39 ILE n 1 40 TRP n 1 41 PHE n 1 42 ARG n 1 43 GLN n 1 44 ALA n 1 45 PRO n 1 46 GLY n 1 47 LYS n 1 48 GLU n 1 49 ARG n 1 50 GLU n 1 51 ILE n 1 52 VAL n 1 53 SER n 1 54 GLY n 1 55 ILE n 1 56 SER n 1 57 LEU n 1 58 ARG n 1 59 LYS n 1 60 GLY n 1 61 TRP n 1 62 THR n 1 63 TYR n 1 64 TYR n 1 65 ALA n 1 66 ASP n 1 67 SER n 1 68 VAL n 1 69 LYS n 1 70 GLY n 1 71 ARG n 1 72 PHE n 1 73 THR n 1 74 ILE n 1 75 SER n 1 76 GLN n 1 77 ASP n 1 78 ASN n 1 79 ALA n 1 80 LYS n 1 81 ASN n 1 82 THR n 1 83 VAL n 1 84 TYR n 1 85 LEU n 1 86 GLN n 1 87 MET n 1 88 ASN n 1 89 ASN n 1 90 LEU n 1 91 LYS n 1 92 PRO n 1 93 GLU n 1 94 ASP n 1 95 THR n 1 96 ALA n 1 97 MET n 1 98 TYR n 1 99 TYR n 1 100 CYS n 1 101 ALA n 1 102 ALA n 1 103 ALA n 1 104 PRO n 1 105 THR n 1 106 ALA n 1 107 THR n 1 108 HIS n 1 109 ALA n 1 110 LEU n 1 111 TYR n 1 112 PHE n 1 113 ASP n 1 114 TYR n 1 115 TRP n 1 116 GLY n 1 117 GLN n 1 118 GLY n 1 119 THR n 1 120 GLN n 1 121 VAL n 1 122 THR n 1 123 VAL n 1 124 SER n 1 125 SER n 1 126 ALA n 1 127 SER n 1 128 GLY n 1 129 ALA n 1 130 ASP n 1 131 HIS n 1 132 HIS n 1 133 HIS n 1 134 HIS n 1 135 HIS n 1 136 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ;Protein was selected by phage display from a fully synthetic library that was partly based on naturally occurring sequences from Camelidae ; _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Camelidae _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9835 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEN non-polymer . BENZAMIDINE ? 'C7 H8 N2' 120.152 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 -3 ? ? ? A . n A 1 2 TYR 2 -2 ? ? ? A . n A 1 3 LYS 3 -1 ? ? ? A . n A 1 4 ASP 4 0 ? ? ? A . n A 1 5 GLU 5 1 1 GLU GLU A . n A 1 6 VAL 6 2 2 VAL VAL A . n A 1 7 GLN 7 3 3 GLN GLN A . n A 1 8 LEU 8 4 4 LEU LEU A . n A 1 9 VAL 9 5 5 VAL VAL A . n A 1 10 GLU 10 6 6 GLU GLU A . n A 1 11 SER 11 7 7 SER SER A . n A 1 12 GLY 12 8 8 GLY GLY A . n A 1 13 GLY 13 9 9 GLY GLY A . n A 1 14 GLY 14 10 10 GLY GLY A . n A 1 15 SER 15 11 11 SER SER A . n A 1 16 VAL 16 12 12 VAL VAL A . n A 1 17 GLN 17 13 13 GLN GLN A . n A 1 18 PRO 18 14 14 PRO PRO A . n A 1 19 GLY 19 15 15 GLY GLY A . n A 1 20 GLY 20 16 16 GLY GLY A . n A 1 21 SER 21 17 17 SER SER A . n A 1 22 LEU 22 18 18 LEU LEU A . n A 1 23 ARG 23 19 19 ARG ARG A . n A 1 24 LEU 24 20 20 LEU LEU A . n A 1 25 SER 25 21 21 SER SER A . n A 1 26 CYS 26 22 22 CYS CYS A . n A 1 27 THR 27 23 23 THR THR A . n A 1 28 ALA 28 24 24 ALA ALA A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 GLY 30 26 26 GLY GLY A . n A 1 31 TYR 31 27 27 TYR TYR A . n A 1 32 THR 32 28 28 THR THR A . n A 1 33 PHE 33 29 29 PHE PHE A . n A 1 34 SER 34 30 30 SER SER A . n A 1 35 GLN 35 31 31 GLN GLN A . n A 1 36 GLU 36 32 32 GLU GLU A . n A 1 37 PHE 37 33 33 PHE PHE A . n A 1 38 VAL 38 34 34 VAL VAL A . n A 1 39 ILE 39 35 35 ILE ILE A . n A 1 40 TRP 40 36 36 TRP TRP A . n A 1 41 PHE 41 37 37 PHE PHE A . n A 1 42 ARG 42 38 38 ARG ARG A . n A 1 43 GLN 43 39 39 GLN GLN A . n A 1 44 ALA 44 40 40 ALA ALA A . n A 1 45 PRO 45 41 41 PRO PRO A . n A 1 46 GLY 46 42 42 GLY GLY A . n A 1 47 LYS 47 43 43 LYS LYS A . n A 1 48 GLU 48 44 44 GLU GLU A . n A 1 49 ARG 49 45 45 ARG ARG A . n A 1 50 GLU 50 46 46 GLU GLU A . n A 1 51 ILE 51 47 47 ILE ILE A . n A 1 52 VAL 52 48 48 VAL VAL A . n A 1 53 SER 53 49 49 SER SER A . n A 1 54 GLY 54 50 50 GLY GLY A . n A 1 55 ILE 55 51 51 ILE ILE A . n A 1 56 SER 56 52 52 SER SER A . n A 1 57 LEU 57 53 53 LEU LEU A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 LYS 59 55 55 LYS LYS A . n A 1 60 GLY 60 56 56 GLY GLY A . n A 1 61 TRP 61 57 57 TRP TRP A . n A 1 62 THR 62 58 58 THR THR A . n A 1 63 TYR 63 59 59 TYR TYR A . n A 1 64 TYR 64 60 60 TYR TYR A . n A 1 65 ALA 65 61 61 ALA ALA A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 SER 67 63 63 SER SER A . n A 1 68 VAL 68 64 64 VAL VAL A . n A 1 69 LYS 69 65 65 LYS LYS A . n A 1 70 GLY 70 66 66 GLY GLY A . n A 1 71 ARG 71 67 67 ARG ARG A . n A 1 72 PHE 72 68 68 PHE PHE A . n A 1 73 THR 73 69 69 THR THR A . n A 1 74 ILE 74 70 70 ILE ILE A . n A 1 75 SER 75 71 71 SER SER A . n A 1 76 GLN 76 72 72 GLN GLN A . n A 1 77 ASP 77 73 73 ASP ASP A . n A 1 78 ASN 78 74 74 ASN ASN A . n A 1 79 ALA 79 75 75 ALA ALA A . n A 1 80 LYS 80 76 76 LYS LYS A . n A 1 81 ASN 81 77 77 ASN ASN A . n A 1 82 THR 82 78 78 THR THR A . n A 1 83 VAL 83 79 79 VAL VAL A . n A 1 84 TYR 84 80 80 TYR TYR A . n A 1 85 LEU 85 81 81 LEU LEU A . n A 1 86 GLN 86 82 82 GLN GLN A . n A 1 87 MET 87 83 83 MET MET A . n A 1 88 ASN 88 84 84 ASN ASN A . n A 1 89 ASN 89 85 85 ASN ASN A . n A 1 90 LEU 90 86 86 LEU LEU A . n A 1 91 LYS 91 87 87 LYS LYS A . n A 1 92 PRO 92 88 88 PRO PRO A . n A 1 93 GLU 93 89 89 GLU GLU A . n A 1 94 ASP 94 90 90 ASP ASP A . n A 1 95 THR 95 91 91 THR THR A . n A 1 96 ALA 96 92 92 ALA ALA A . n A 1 97 MET 97 93 93 MET MET A . n A 1 98 TYR 98 94 94 TYR TYR A . n A 1 99 TYR 99 95 95 TYR TYR A . n A 1 100 CYS 100 96 96 CYS CYS A . n A 1 101 ALA 101 97 97 ALA ALA A . n A 1 102 ALA 102 98 98 ALA ALA A . n A 1 103 ALA 103 99 99 ALA ALA A . n A 1 104 PRO 104 100 100 PRO PRO A . n A 1 105 THR 105 101 101 THR THR A . n A 1 106 ALA 106 102 102 ALA ALA A . n A 1 107 THR 107 103 103 THR THR A . n A 1 108 HIS 108 104 104 HIS HIS A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 TYR 111 107 107 TYR TYR A . n A 1 112 PHE 112 108 108 PHE PHE A . n A 1 113 ASP 113 109 109 ASP ASP A . n A 1 114 TYR 114 110 110 TYR TYR A . n A 1 115 TRP 115 111 111 TRP TRP A . n A 1 116 GLY 116 112 112 GLY GLY A . n A 1 117 GLN 117 113 113 GLN GLN A . n A 1 118 GLY 118 114 114 GLY GLY A . n A 1 119 THR 119 115 115 THR THR A . n A 1 120 GLN 120 116 116 GLN GLN A . n A 1 121 VAL 121 117 117 VAL VAL A . n A 1 122 THR 122 118 118 THR THR A . n A 1 123 VAL 123 119 119 VAL VAL A . n A 1 124 SER 124 120 120 SER SER A . n A 1 125 SER 125 121 ? ? ? A . n A 1 126 ALA 126 122 ? ? ? A . n A 1 127 SER 127 123 ? ? ? A . n A 1 128 GLY 128 124 ? ? ? A . n A 1 129 ALA 129 125 ? ? ? A . n A 1 130 ASP 130 126 ? ? ? A . n A 1 131 HIS 131 127 ? ? ? A . n A 1 132 HIS 132 128 ? ? ? A . n A 1 133 HIS 133 129 ? ? ? A . n A 1 134 HIS 134 130 ? ? ? A . n A 1 135 HIS 135 131 ? ? ? A . n A 1 136 HIS 136 132 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN 1 133 1 BEN BEN A . C 3 EDO 1 134 1 EDO EDO A . D 4 HOH 1 135 135 HOH HOH A . D 4 HOH 2 136 1 HOH HOH A . D 4 HOH 3 137 2 HOH HOH A . D 4 HOH 4 138 138 HOH HOH A . D 4 HOH 5 139 3 HOH HOH A . D 4 HOH 6 140 140 HOH HOH A . D 4 HOH 7 141 141 HOH HOH A . D 4 HOH 8 142 142 HOH HOH A . D 4 HOH 9 143 143 HOH HOH A . D 4 HOH 10 144 4 HOH HOH A . D 4 HOH 11 145 5 HOH HOH A . D 4 HOH 12 146 6 HOH HOH A . D 4 HOH 13 147 7 HOH HOH A . D 4 HOH 14 148 8 HOH HOH A . D 4 HOH 15 149 9 HOH HOH A . D 4 HOH 16 150 10 HOH HOH A . D 4 HOH 17 151 11 HOH HOH A . D 4 HOH 18 152 12 HOH HOH A . D 4 HOH 19 153 13 HOH HOH A . D 4 HOH 20 154 14 HOH HOH A . D 4 HOH 21 155 16 HOH HOH A . D 4 HOH 22 156 17 HOH HOH A . D 4 HOH 23 157 18 HOH HOH A . D 4 HOH 24 158 19 HOH HOH A . D 4 HOH 25 159 20 HOH HOH A . D 4 HOH 26 160 21 HOH HOH A . D 4 HOH 27 161 22 HOH HOH A . D 4 HOH 28 162 24 HOH HOH A . D 4 HOH 29 163 25 HOH HOH A . D 4 HOH 30 164 27 HOH HOH A . D 4 HOH 31 165 28 HOH HOH A . D 4 HOH 32 166 29 HOH HOH A . D 4 HOH 33 167 30 HOH HOH A . D 4 HOH 34 168 31 HOH HOH A . D 4 HOH 35 169 32 HOH HOH A . D 4 HOH 36 170 33 HOH HOH A . D 4 HOH 37 171 35 HOH HOH A . D 4 HOH 38 172 36 HOH HOH A . D 4 HOH 39 173 37 HOH HOH A . D 4 HOH 40 174 38 HOH HOH A . D 4 HOH 41 175 40 HOH HOH A . D 4 HOH 42 176 41 HOH HOH A . D 4 HOH 43 177 42 HOH HOH A . D 4 HOH 44 178 43 HOH HOH A . D 4 HOH 45 179 44 HOH HOH A . D 4 HOH 46 180 45 HOH HOH A . D 4 HOH 47 181 46 HOH HOH A . D 4 HOH 48 182 47 HOH HOH A . D 4 HOH 49 183 50 HOH HOH A . D 4 HOH 50 184 51 HOH HOH A . D 4 HOH 51 185 52 HOH HOH A . D 4 HOH 52 186 53 HOH HOH A . D 4 HOH 53 187 54 HOH HOH A . D 4 HOH 54 188 55 HOH HOH A . D 4 HOH 55 189 56 HOH HOH A . D 4 HOH 56 190 57 HOH HOH A . D 4 HOH 57 191 58 HOH HOH A . D 4 HOH 58 192 59 HOH HOH A . D 4 HOH 59 193 60 HOH HOH A . D 4 HOH 60 194 62 HOH HOH A . D 4 HOH 61 195 63 HOH HOH A . D 4 HOH 62 196 64 HOH HOH A . D 4 HOH 63 197 65 HOH HOH A . D 4 HOH 64 198 66 HOH HOH A . D 4 HOH 65 199 69 HOH HOH A . D 4 HOH 66 200 70 HOH HOH A . D 4 HOH 67 201 71 HOH HOH A . D 4 HOH 68 202 72 HOH HOH A . D 4 HOH 69 203 73 HOH HOH A . D 4 HOH 70 204 74 HOH HOH A . D 4 HOH 71 205 75 HOH HOH A . D 4 HOH 72 206 76 HOH HOH A . D 4 HOH 73 207 77 HOH HOH A . D 4 HOH 74 208 78 HOH HOH A . D 4 HOH 75 209 80 HOH HOH A . D 4 HOH 76 210 81 HOH HOH A . D 4 HOH 77 211 82 HOH HOH A . D 4 HOH 78 212 83 HOH HOH A . D 4 HOH 79 213 84 HOH HOH A . D 4 HOH 80 214 85 HOH HOH A . D 4 HOH 81 215 86 HOH HOH A . D 4 HOH 82 216 87 HOH HOH A . D 4 HOH 83 217 89 HOH HOH A . D 4 HOH 84 218 90 HOH HOH A . D 4 HOH 85 219 91 HOH HOH A . D 4 HOH 86 220 92 HOH HOH A . D 4 HOH 87 221 93 HOH HOH A . D 4 HOH 88 222 94 HOH HOH A . D 4 HOH 89 223 96 HOH HOH A . D 4 HOH 90 224 97 HOH HOH A . D 4 HOH 91 225 98 HOH HOH A . D 4 HOH 92 226 99 HOH HOH A . D 4 HOH 93 227 100 HOH HOH A . D 4 HOH 94 228 102 HOH HOH A . D 4 HOH 95 229 103 HOH HOH A . D 4 HOH 96 230 104 HOH HOH A . D 4 HOH 97 231 105 HOH HOH A . D 4 HOH 98 232 106 HOH HOH A . D 4 HOH 99 233 107 HOH HOH A . D 4 HOH 100 234 112 HOH HOH A . D 4 HOH 101 235 113 HOH HOH A . D 4 HOH 102 236 114 HOH HOH A . D 4 HOH 103 237 115 HOH HOH A . D 4 HOH 104 238 116 HOH HOH A . D 4 HOH 105 239 118 HOH HOH A . D 4 HOH 106 240 119 HOH HOH A . D 4 HOH 107 241 124 HOH HOH A . D 4 HOH 108 242 125 HOH HOH A . D 4 HOH 109 243 129 HOH HOH A . D 4 HOH 110 244 130 HOH HOH A . D 4 HOH 111 245 131 HOH HOH A . D 4 HOH 112 246 132 HOH HOH A . D 4 HOH 113 247 133 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 30.921 _cell.length_b 38.659 _cell.length_c 94.412 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3TPK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3TPK _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3TPK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.9 _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;200 mM Magnesium Formate, 20%(w/v)PEG 3350, Additive: Benzamidine Hydrochloride 1M , pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 288K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-05-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 # _reflns.entry_id 3TPK _reflns.d_resolution_high 1.210 _reflns.number_obs 31606 _reflns.pdbx_Rmerge_I_obs 0.031 _reflns.pdbx_netI_over_sigmaI 19.860 _reflns.percent_possible_obs 89.300 _reflns.B_iso_Wilson_estimate 16.062 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30 _reflns.number_all 35385 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.210 1.240 2082 ? 1207 0.383 1.850 ? ? ? ? ? 46.800 1 1 1.240 1.280 2779 ? 1467 0.335 2.260 ? ? ? ? ? 59.000 2 1 1.280 1.310 3604 ? 1718 0.301 2.760 ? ? ? ? ? 70.500 3 1 1.310 1.350 4559 ? 1950 0.257 3.420 ? ? ? ? ? 81.900 4 1 1.350 1.400 5934 ? 2178 0.234 4.310 ? ? ? ? ? 94.400 5 1 1.400 1.450 7603 ? 2202 0.205 6.050 ? ? ? ? ? 99.200 6 1 1.450 1.500 7727 ? 2175 0.158 7.690 ? ? ? ? ? 99.900 7 1 1.500 1.560 7335 ? 2061 0.122 9.840 ? ? ? ? ? 99.700 8 1 1.560 1.630 7199 ? 2012 0.096 12.410 ? ? ? ? ? 99.900 9 1 1.630 1.710 6848 ? 1913 0.071 15.950 ? ? ? ? ? 99.700 10 1 1.710 1.800 6459 ? 1807 0.057 19.560 ? ? ? ? ? 99.600 11 1 1.800 1.910 6228 ? 1738 0.043 25.130 ? ? ? ? ? 99.600 12 1 1.910 2.050 5787 ? 1622 0.031 32.540 ? ? ? ? ? 99.600 13 1 2.050 2.210 5466 ? 1531 0.027 38.080 ? ? ? ? ? 99.800 14 1 2.210 2.420 4964 ? 1399 0.024 41.750 ? ? ? ? ? 99.300 15 1 2.420 2.710 4486 ? 1273 0.024 45.940 ? ? ? ? ? 99.100 16 1 2.710 3.120 3996 ? 1143 0.022 50.800 ? ? ? ? ? 99.000 17 1 3.120 3.830 3418 ? 983 0.018 58.560 ? ? ? ? ? 99.400 18 1 3.830 5.410 2581 ? 767 0.016 60.650 ? ? ? ? ? 99.500 19 1 5.410 30.0 1430 ? 460 0.016 57.090 ? ? ? ? ? 97.500 20 1 # _refine.entry_id 3TPK _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 25.8700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 27804 _refine.ls_number_reflns_all 31606 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY ; _refine.ls_R_factor_all 0.1430 _refine.ls_R_factor_obs 0.1430 _refine.ls_R_factor_R_work 0.1412 _refine.ls_wR_factor_R_work 0.1412 _refine.ls_R_factor_R_free 0.1761 _refine.ls_wR_factor_R_free 0.1707 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1391 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.3404 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.2300 _refine.aniso_B[2][2] -0.0300 _refine.aniso_B[3][3] -0.2000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9720 _refine.correlation_coeff_Fo_to_Fc_free 0.9580 _refine.overall_SU_R_Cruickshank_DPI 0.0476 _refine.overall_SU_R_free 0.0472 _refine.pdbx_overall_ESU_R_Free 0.0470 _refine.overall_SU_ML 0.0250 _refine.overall_SU_B 1.2920 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 3LN9' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9174 _refine.B_iso_max 49.190 _refine.B_iso_min 6.370 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 934 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1060 _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 25.8700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 996 0.026 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1352 2.046 1.938 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 124 6.522 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 45 34.513 23.556 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 153 12.221 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 14.893 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 142 0.147 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 776 0.013 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 611 2.730 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 979 3.944 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 385 4.718 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 373 6.440 4.500 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 996 2.794 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 113 13.191 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 971 8.294 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.3000 _refine_ls_shell.d_res_low 1.3340 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 1546 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1840 _refine_ls_shell.R_factor_R_free 0.2500 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1628 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3TPK _struct.title 'Crystal structure of the oligomer-specific KW1 antibody fragment' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TPK _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;Immunoglobulin Heavy Chain Domains, VHH, Complementarity Determining Regions, CDR, oligomer-specific, Alzheimer's disease, Amyloid, Immune System ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3TPK _struct_ref.pdbx_db_accession 3TPK _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DYKDEVQLVESGGGSVQPGGSLRLSCTASGYTFSQEFVIWFRQAPGKEREIVSGISLRKGWTYYADSVKGRFTISQDNAK NTVYLQMNNLKPEDTAMYYCAAAPTATHALYFDYWGQGTQVTVSSASGADHHHHHH ; _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TPK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 136 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3TPK _struct_ref_seq.db_align_beg -3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 132 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -3 _struct_ref_seq.pdbx_auth_seq_align_end 132 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 32 ? GLN A 35 ? THR A 28 GLN A 31 5 ? 4 HELX_P HELX_P2 2 ASP A 66 ? LYS A 69 ? ASP A 62 LYS A 65 5 ? 4 HELX_P HELX_P3 3 LYS A 91 ? THR A 95 ? LYS A 87 THR A 91 5 ? 5 HELX_P HELX_P4 4 HIS A 108 ? PHE A 112 ? HIS A 104 PHE A 108 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 26 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 100 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.064 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 26 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 100 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 22 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 96 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? SER A 11 ? VAL A 2 SER A 7 A 2 LEU A 22 ? GLY A 30 ? LEU A 18 GLY A 26 A 3 THR A 82 ? MET A 87 ? THR A 78 MET A 83 A 4 PHE A 72 ? ASP A 77 ? PHE A 68 ASP A 73 B 1 GLY A 14 ? VAL A 16 ? GLY A 10 VAL A 12 B 2 THR A 119 ? VAL A 123 ? THR A 115 VAL A 119 B 3 ALA A 96 ? ALA A 103 ? ALA A 92 ALA A 99 B 4 PHE A 37 ? GLN A 43 ? PHE A 33 GLN A 39 B 5 GLU A 50 ? SER A 56 ? GLU A 46 SER A 52 B 6 THR A 62 ? TYR A 64 ? THR A 58 TYR A 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 9 ? N VAL A 5 O THR A 27 ? O THR A 23 A 2 3 N LEU A 22 ? N LEU A 18 O MET A 87 ? O MET A 83 A 3 4 O GLN A 86 ? O GLN A 82 N THR A 73 ? N THR A 69 B 1 2 N VAL A 16 ? N VAL A 12 O THR A 122 ? O THR A 118 B 2 3 O THR A 119 ? O THR A 115 N TYR A 98 ? N TYR A 94 B 3 4 O TYR A 99 ? O TYR A 95 N PHE A 41 ? N PHE A 37 B 4 5 N ARG A 42 ? N ARG A 38 O GLU A 50 ? O GLU A 46 B 5 6 N GLY A 54 ? N GLY A 50 O TYR A 63 ? O TYR A 59 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BEN 133 ? 11 'BINDING SITE FOR RESIDUE BEN A 133' AC2 Software A EDO 134 ? 7 'BINDING SITE FOR RESIDUE EDO A 134' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 LEU A 8 ? LEU A 4 . ? 1_555 ? 2 AC1 11 ALA A 28 ? ALA A 24 . ? 1_555 ? 3 AC1 11 THR A 32 ? THR A 28 . ? 1_555 ? 4 AC1 11 GLN A 35 ? GLN A 31 . ? 1_555 ? 5 AC1 11 VAL A 38 ? VAL A 34 . ? 1_555 ? 6 AC1 11 LEU A 57 ? LEU A 53 . ? 1_555 ? 7 AC1 11 ASN A 81 ? ASN A 77 . ? 1_555 ? 8 AC1 11 VAL A 83 ? VAL A 79 . ? 1_555 ? 9 AC1 11 THR A 107 ? THR A 103 . ? 3_544 ? 10 AC1 11 HIS A 108 ? HIS A 104 . ? 3_544 ? 11 AC1 11 EDO C . ? EDO A 134 . ? 1_555 ? 12 AC2 7 THR A 32 ? THR A 28 . ? 1_555 ? 13 AC2 7 PHE A 33 ? PHE A 29 . ? 1_555 ? 14 AC2 7 HIS A 108 ? HIS A 104 . ? 3_544 ? 15 AC2 7 ALA A 109 ? ALA A 105 . ? 3_544 ? 16 AC2 7 LEU A 110 ? LEU A 106 . ? 3_544 ? 17 AC2 7 BEN B . ? BEN A 133 . ? 1_555 ? 18 AC2 7 HOH D . ? HOH A 209 . ? 1_555 ? # _pdbx_entry_details.entry_id 3TPK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 27 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CE _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 LYS _pdbx_validate_symm_contact.auth_seq_id_2 55 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_544 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A TYR 27 ? ? CD1 A TYR 27 ? ? 1.292 1.387 -0.095 0.013 N 2 1 SD A MET 83 ? ? CE A MET 83 ? ? 1.393 1.774 -0.381 0.056 N 3 1 CB A GLU 89 ? ? CG A GLU 89 ? ? 1.669 1.517 0.152 0.019 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 83 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 83 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 83 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 89.69 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -10.51 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 31 ? ? -100.09 72.88 2 1 ALA A 92 ? ? 179.30 169.86 3 1 TYR A 110 ? ? 81.32 13.53 # _pdbx_phasing_MR.entry_id 3TPK _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 30.420 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 25.870 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 25.870 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP -3 ? A ASP 1 2 1 Y 1 A TYR -2 ? A TYR 2 3 1 Y 1 A LYS -1 ? A LYS 3 4 1 Y 1 A ASP 0 ? A ASP 4 5 1 Y 1 A SER 121 ? A SER 125 6 1 Y 1 A ALA 122 ? A ALA 126 7 1 Y 1 A SER 123 ? A SER 127 8 1 Y 1 A GLY 124 ? A GLY 128 9 1 Y 1 A ALA 125 ? A ALA 129 10 1 Y 1 A ASP 126 ? A ASP 130 11 1 Y 1 A HIS 127 ? A HIS 131 12 1 Y 1 A HIS 128 ? A HIS 132 13 1 Y 1 A HIS 129 ? A HIS 133 14 1 Y 1 A HIS 130 ? A HIS 134 15 1 Y 1 A HIS 131 ? A HIS 135 16 1 Y 1 A HIS 132 ? A HIS 136 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BEN C1 C Y N 74 BEN C2 C Y N 75 BEN C3 C Y N 76 BEN C4 C Y N 77 BEN C5 C Y N 78 BEN C6 C Y N 79 BEN C C N N 80 BEN N1 N N N 81 BEN N2 N N N 82 BEN H2 H N N 83 BEN H3 H N N 84 BEN H4 H N N 85 BEN H5 H N N 86 BEN H6 H N N 87 BEN HN1 H N N 88 BEN HN21 H N N 89 BEN HN22 H N N 90 CYS N N N N 91 CYS CA C N R 92 CYS C C N N 93 CYS O O N N 94 CYS CB C N N 95 CYS SG S N N 96 CYS OXT O N N 97 CYS H H N N 98 CYS H2 H N N 99 CYS HA H N N 100 CYS HB2 H N N 101 CYS HB3 H N N 102 CYS HG H N N 103 CYS HXT H N N 104 EDO C1 C N N 105 EDO O1 O N N 106 EDO C2 C N N 107 EDO O2 O N N 108 EDO H11 H N N 109 EDO H12 H N N 110 EDO HO1 H N N 111 EDO H21 H N N 112 EDO H22 H N N 113 EDO HO2 H N N 114 GLN N N N N 115 GLN CA C N S 116 GLN C C N N 117 GLN O O N N 118 GLN CB C N N 119 GLN CG C N N 120 GLN CD C N N 121 GLN OE1 O N N 122 GLN NE2 N N N 123 GLN OXT O N N 124 GLN H H N N 125 GLN H2 H N N 126 GLN HA H N N 127 GLN HB2 H N N 128 GLN HB3 H N N 129 GLN HG2 H N N 130 GLN HG3 H N N 131 GLN HE21 H N N 132 GLN HE22 H N N 133 GLN HXT H N N 134 GLU N N N N 135 GLU CA C N S 136 GLU C C N N 137 GLU O O N N 138 GLU CB C N N 139 GLU CG C N N 140 GLU CD C N N 141 GLU OE1 O N N 142 GLU OE2 O N N 143 GLU OXT O N N 144 GLU H H N N 145 GLU H2 H N N 146 GLU HA H N N 147 GLU HB2 H N N 148 GLU HB3 H N N 149 GLU HG2 H N N 150 GLU HG3 H N N 151 GLU HE2 H N N 152 GLU HXT H N N 153 GLY N N N N 154 GLY CA C N N 155 GLY C C N N 156 GLY O O N N 157 GLY OXT O N N 158 GLY H H N N 159 GLY H2 H N N 160 GLY HA2 H N N 161 GLY HA3 H N N 162 GLY HXT H N N 163 HIS N N N N 164 HIS CA C N S 165 HIS C C N N 166 HIS O O N N 167 HIS CB C N N 168 HIS CG C Y N 169 HIS ND1 N Y N 170 HIS CD2 C Y N 171 HIS CE1 C Y N 172 HIS NE2 N Y N 173 HIS OXT O N N 174 HIS H H N N 175 HIS H2 H N N 176 HIS HA H N N 177 HIS HB2 H N N 178 HIS HB3 H N N 179 HIS HD1 H N N 180 HIS HD2 H N N 181 HIS HE1 H N N 182 HIS HE2 H N N 183 HIS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 ILE N N N N 188 ILE CA C N S 189 ILE C C N N 190 ILE O O N N 191 ILE CB C N S 192 ILE CG1 C N N 193 ILE CG2 C N N 194 ILE CD1 C N N 195 ILE OXT O N N 196 ILE H H N N 197 ILE H2 H N N 198 ILE HA H N N 199 ILE HB H N N 200 ILE HG12 H N N 201 ILE HG13 H N N 202 ILE HG21 H N N 203 ILE HG22 H N N 204 ILE HG23 H N N 205 ILE HD11 H N N 206 ILE HD12 H N N 207 ILE HD13 H N N 208 ILE HXT H N N 209 LEU N N N N 210 LEU CA C N S 211 LEU C C N N 212 LEU O O N N 213 LEU CB C N N 214 LEU CG C N N 215 LEU CD1 C N N 216 LEU CD2 C N N 217 LEU OXT O N N 218 LEU H H N N 219 LEU H2 H N N 220 LEU HA H N N 221 LEU HB2 H N N 222 LEU HB3 H N N 223 LEU HG H N N 224 LEU HD11 H N N 225 LEU HD12 H N N 226 LEU HD13 H N N 227 LEU HD21 H N N 228 LEU HD22 H N N 229 LEU HD23 H N N 230 LEU HXT H N N 231 LYS N N N N 232 LYS CA C N S 233 LYS C C N N 234 LYS O O N N 235 LYS CB C N N 236 LYS CG C N N 237 LYS CD C N N 238 LYS CE C N N 239 LYS NZ N N N 240 LYS OXT O N N 241 LYS H H N N 242 LYS H2 H N N 243 LYS HA H N N 244 LYS HB2 H N N 245 LYS HB3 H N N 246 LYS HG2 H N N 247 LYS HG3 H N N 248 LYS HD2 H N N 249 LYS HD3 H N N 250 LYS HE2 H N N 251 LYS HE3 H N N 252 LYS HZ1 H N N 253 LYS HZ2 H N N 254 LYS HZ3 H N N 255 LYS HXT H N N 256 MET N N N N 257 MET CA C N S 258 MET C C N N 259 MET O O N N 260 MET CB C N N 261 MET CG C N N 262 MET SD S N N 263 MET CE C N N 264 MET OXT O N N 265 MET H H N N 266 MET H2 H N N 267 MET HA H N N 268 MET HB2 H N N 269 MET HB3 H N N 270 MET HG2 H N N 271 MET HG3 H N N 272 MET HE1 H N N 273 MET HE2 H N N 274 MET HE3 H N N 275 MET HXT H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BEN C1 C2 doub Y N 70 BEN C1 C6 sing Y N 71 BEN C1 C sing N N 72 BEN C2 C3 sing Y N 73 BEN C2 H2 sing N N 74 BEN C3 C4 doub Y N 75 BEN C3 H3 sing N N 76 BEN C4 C5 sing Y N 77 BEN C4 H4 sing N N 78 BEN C5 C6 doub Y N 79 BEN C5 H5 sing N N 80 BEN C6 H6 sing N N 81 BEN C N1 doub N E 82 BEN C N2 sing N N 83 BEN N1 HN1 sing N N 84 BEN N2 HN21 sing N N 85 BEN N2 HN22 sing N N 86 CYS N CA sing N N 87 CYS N H sing N N 88 CYS N H2 sing N N 89 CYS CA C sing N N 90 CYS CA CB sing N N 91 CYS CA HA sing N N 92 CYS C O doub N N 93 CYS C OXT sing N N 94 CYS CB SG sing N N 95 CYS CB HB2 sing N N 96 CYS CB HB3 sing N N 97 CYS SG HG sing N N 98 CYS OXT HXT sing N N 99 EDO C1 O1 sing N N 100 EDO C1 C2 sing N N 101 EDO C1 H11 sing N N 102 EDO C1 H12 sing N N 103 EDO O1 HO1 sing N N 104 EDO C2 O2 sing N N 105 EDO C2 H21 sing N N 106 EDO C2 H22 sing N N 107 EDO O2 HO2 sing N N 108 GLN N CA sing N N 109 GLN N H sing N N 110 GLN N H2 sing N N 111 GLN CA C sing N N 112 GLN CA CB sing N N 113 GLN CA HA sing N N 114 GLN C O doub N N 115 GLN C OXT sing N N 116 GLN CB CG sing N N 117 GLN CB HB2 sing N N 118 GLN CB HB3 sing N N 119 GLN CG CD sing N N 120 GLN CG HG2 sing N N 121 GLN CG HG3 sing N N 122 GLN CD OE1 doub N N 123 GLN CD NE2 sing N N 124 GLN NE2 HE21 sing N N 125 GLN NE2 HE22 sing N N 126 GLN OXT HXT sing N N 127 GLU N CA sing N N 128 GLU N H sing N N 129 GLU N H2 sing N N 130 GLU CA C sing N N 131 GLU CA CB sing N N 132 GLU CA HA sing N N 133 GLU C O doub N N 134 GLU C OXT sing N N 135 GLU CB CG sing N N 136 GLU CB HB2 sing N N 137 GLU CB HB3 sing N N 138 GLU CG CD sing N N 139 GLU CG HG2 sing N N 140 GLU CG HG3 sing N N 141 GLU CD OE1 doub N N 142 GLU CD OE2 sing N N 143 GLU OE2 HE2 sing N N 144 GLU OXT HXT sing N N 145 GLY N CA sing N N 146 GLY N H sing N N 147 GLY N H2 sing N N 148 GLY CA C sing N N 149 GLY CA HA2 sing N N 150 GLY CA HA3 sing N N 151 GLY C O doub N N 152 GLY C OXT sing N N 153 GLY OXT HXT sing N N 154 HIS N CA sing N N 155 HIS N H sing N N 156 HIS N H2 sing N N 157 HIS CA C sing N N 158 HIS CA CB sing N N 159 HIS CA HA sing N N 160 HIS C O doub N N 161 HIS C OXT sing N N 162 HIS CB CG sing N N 163 HIS CB HB2 sing N N 164 HIS CB HB3 sing N N 165 HIS CG ND1 sing Y N 166 HIS CG CD2 doub Y N 167 HIS ND1 CE1 doub Y N 168 HIS ND1 HD1 sing N N 169 HIS CD2 NE2 sing Y N 170 HIS CD2 HD2 sing N N 171 HIS CE1 NE2 sing Y N 172 HIS CE1 HE1 sing N N 173 HIS NE2 HE2 sing N N 174 HIS OXT HXT sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 ILE N CA sing N N 178 ILE N H sing N N 179 ILE N H2 sing N N 180 ILE CA C sing N N 181 ILE CA CB sing N N 182 ILE CA HA sing N N 183 ILE C O doub N N 184 ILE C OXT sing N N 185 ILE CB CG1 sing N N 186 ILE CB CG2 sing N N 187 ILE CB HB sing N N 188 ILE CG1 CD1 sing N N 189 ILE CG1 HG12 sing N N 190 ILE CG1 HG13 sing N N 191 ILE CG2 HG21 sing N N 192 ILE CG2 HG22 sing N N 193 ILE CG2 HG23 sing N N 194 ILE CD1 HD11 sing N N 195 ILE CD1 HD12 sing N N 196 ILE CD1 HD13 sing N N 197 ILE OXT HXT sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MET N CA sing N N 244 MET N H sing N N 245 MET N H2 sing N N 246 MET CA C sing N N 247 MET CA CB sing N N 248 MET CA HA sing N N 249 MET C O doub N N 250 MET C OXT sing N N 251 MET CB CG sing N N 252 MET CB HB2 sing N N 253 MET CB HB3 sing N N 254 MET CG SD sing N N 255 MET CG HG2 sing N N 256 MET CG HG3 sing N N 257 MET SD CE sing N N 258 MET CE HE1 sing N N 259 MET CE HE2 sing N N 260 MET CE HE3 sing N N 261 MET OXT HXT sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 THR N CA sing N N 316 THR N H sing N N 317 THR N H2 sing N N 318 THR CA C sing N N 319 THR CA CB sing N N 320 THR CA HA sing N N 321 THR C O doub N N 322 THR C OXT sing N N 323 THR CB OG1 sing N N 324 THR CB CG2 sing N N 325 THR CB HB sing N N 326 THR OG1 HG1 sing N N 327 THR CG2 HG21 sing N N 328 THR CG2 HG22 sing N N 329 THR CG2 HG23 sing N N 330 THR OXT HXT sing N N 331 TRP N CA sing N N 332 TRP N H sing N N 333 TRP N H2 sing N N 334 TRP CA C sing N N 335 TRP CA CB sing N N 336 TRP CA HA sing N N 337 TRP C O doub N N 338 TRP C OXT sing N N 339 TRP CB CG sing N N 340 TRP CB HB2 sing N N 341 TRP CB HB3 sing N N 342 TRP CG CD1 doub Y N 343 TRP CG CD2 sing Y N 344 TRP CD1 NE1 sing Y N 345 TRP CD1 HD1 sing N N 346 TRP CD2 CE2 doub Y N 347 TRP CD2 CE3 sing Y N 348 TRP NE1 CE2 sing Y N 349 TRP NE1 HE1 sing N N 350 TRP CE2 CZ2 sing Y N 351 TRP CE3 CZ3 doub Y N 352 TRP CE3 HE3 sing N N 353 TRP CZ2 CH2 doub Y N 354 TRP CZ2 HZ2 sing N N 355 TRP CZ3 CH2 sing Y N 356 TRP CZ3 HZ3 sing N N 357 TRP CH2 HH2 sing N N 358 TRP OXT HXT sing N N 359 TYR N CA sing N N 360 TYR N H sing N N 361 TYR N H2 sing N N 362 TYR CA C sing N N 363 TYR CA CB sing N N 364 TYR CA HA sing N N 365 TYR C O doub N N 366 TYR C OXT sing N N 367 TYR CB CG sing N N 368 TYR CB HB2 sing N N 369 TYR CB HB3 sing N N 370 TYR CG CD1 doub Y N 371 TYR CG CD2 sing Y N 372 TYR CD1 CE1 sing Y N 373 TYR CD1 HD1 sing N N 374 TYR CD2 CE2 doub Y N 375 TYR CD2 HD2 sing N N 376 TYR CE1 CZ doub Y N 377 TYR CE1 HE1 sing N N 378 TYR CE2 CZ sing Y N 379 TYR CE2 HE2 sing N N 380 TYR CZ OH sing N N 381 TYR OH HH sing N N 382 TYR OXT HXT sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3LN9 _pdbx_initial_refinement_model.details 'PDB entry 3LN9' # _atom_sites.entry_id 3TPK _atom_sites.fract_transf_matrix[1][1] 0.032340 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025867 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010592 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_