HEADER TRANSFERASE 08-SEP-11 3TPT TITLE STRUCTURE OF HIPA(D309Q) BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HIPA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HIPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PERSISTENCE, MULTIDRUG TOLERANCE, HIPA, HIPB, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,T.LINK,R.G.BRENNAN REVDAT 3 28-FEB-24 3TPT 1 REMARK SEQADV LINK REVDAT 2 17-OCT-12 3TPT 1 JRNL REVDAT 1 03-OCT-12 3TPT 0 JRNL AUTH M.A.SCHUMACHER,J.MIN,T.M.LINK,Z.GUAN,W.XU,Y.H.AHN, JRNL AUTH 2 E.J.SODERBLOM,J.M.KURIE,A.EVDOKIMOV,M.A.MOSELEY,K.LEWIS, JRNL AUTH 3 R.G.BRENNAN JRNL TITL ROLE OF UNUSUAL P LOOP EJECTION AND AUTOPHOSPHORYLATION IN JRNL TITL 2 HIPA-MEDIATED PERSISTENCE AND MULTIDRUG TOLERANCE. JRNL REF CELL REP V. 2 518 2012 JRNL REFN ESSN 2211-1247 JRNL PMID 22999936 JRNL DOI 10.1016/J.CELREP.2012.08.013 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1450321.440 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 36653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1815 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5797 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 290 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.87000 REMARK 3 B22 (A**2) : -7.17000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.910 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.070 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 55.83 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3TPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 89.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 0.1 M CHES, PH 9.5 , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.21500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 106 REMARK 465 ASP A 107 REMARK 465 GLU A 108 REMARK 465 THR A 109 REMARK 465 VAL A 110 REMARK 465 THR A 111 REMARK 465 HIS A 112 REMARK 465 PRO A 113 REMARK 465 GLY A 185 REMARK 465 GLU A 186 REMARK 465 ILE A 187 REMARK 465 ARG A 188 REMARK 465 GLN A 189 REMARK 465 PRO A 190 REMARK 465 ASN A 191 REMARK 465 ALA A 192 REMARK 465 THR A 193 REMARK 465 LEU A 194 REMARK 465 ASP A 195 REMARK 465 LEU A 196 REMARK 465 SER A 197 REMARK 465 GLY A 438 REMARK 465 SER A 439 REMARK 465 LYS A 440 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ILE B 184 REMARK 465 GLY B 185 REMARK 465 GLU B 186 REMARK 465 ILE B 187 REMARK 465 ARG B 188 REMARK 465 GLN B 189 REMARK 465 PRO B 190 REMARK 465 ASN B 191 REMARK 465 ALA B 192 REMARK 465 THR B 193 REMARK 465 LEU B 194 REMARK 465 ASP B 195 REMARK 465 LEU B 196 REMARK 465 SER B 197 REMARK 465 GLU B 436 REMARK 465 TYR B 437 REMARK 465 GLY B 438 REMARK 465 SER B 439 REMARK 465 LYS B 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 279 CG MET A 279 SD 0.166 REMARK 500 MET B 398 CG MET B 398 SD 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -117.60 61.56 REMARK 500 SER A 35 157.14 -49.61 REMARK 500 TYR A 37 51.76 -117.30 REMARK 500 SER A 83 -174.98 -175.11 REMARK 500 TRP A 117 -174.71 -170.43 REMARK 500 GLU A 122 -8.88 -58.59 REMARK 500 ALA A 134 41.06 -108.75 REMARK 500 LEU A 138 49.14 33.83 REMARK 500 GLU A 287 54.97 -140.15 REMARK 500 PRO A 384 120.86 -39.73 REMARK 500 ASN B 9 -89.21 62.99 REMARK 500 TYR B 37 39.61 -91.15 REMARK 500 GLU B 108 45.01 -81.82 REMARK 500 THR B 109 84.24 -58.78 REMARK 500 LEU B 138 36.75 36.02 REMARK 500 ILE B 141 150.34 -49.43 REMARK 500 LYS B 157 -167.29 -167.04 REMARK 500 VAL B 265 40.44 -109.52 REMARK 500 HIS B 311 -168.83 -69.61 REMARK 500 PRO B 384 119.85 -32.25 REMARK 500 PRO B 415 105.85 -54.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 441 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 314 OD1 REMARK 620 2 ADP A 500 O2A 78.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 442 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 314 OD1 REMARK 620 2 ASP B 332 OD2 78.8 REMARK 620 3 ADP B 501 O3B 161.9 88.5 REMARK 620 4 ADP B 501 O2A 83.4 88.5 83.4 REMARK 620 5 HOH B 536 O 95.8 168.6 94.3 80.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 441 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 332 OD1 REMARK 620 2 ASP B 332 OD2 46.3 REMARK 620 3 ADP B 501 O2B 57.7 77.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 834 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DNT RELATED DB: PDB REMARK 900 RELATED ID: 3DNU RELATED DB: PDB REMARK 900 RELATED ID: 3DNV RELATED DB: PDB REMARK 900 RELATED ID: 3FBR RELATED DB: PDB REMARK 900 RELATED ID: 3HZI RELATED DB: PDB REMARK 900 RELATED ID: 3TPB RELATED DB: PDB REMARK 900 RELATED ID: 3TPD RELATED DB: PDB REMARK 900 RELATED ID: 3TPE RELATED DB: PDB REMARK 900 RELATED ID: 3TPV RELATED DB: PDB DBREF 3TPT A 1 440 UNP P23874 HIPA_ECOLI 1 440 DBREF 3TPT B 1 440 UNP P23874 HIPA_ECOLI 1 440 SEQADV 3TPT ARG A 243 UNP P23874 GLU 243 CONFLICT SEQADV 3TPT GLN A 309 UNP P23874 ASP 309 ENGINEERED MUTATION SEQADV 3TPT ARG B 243 UNP P23874 GLU 243 CONFLICT SEQADV 3TPT GLN B 309 UNP P23874 ASP 309 ENGINEERED MUTATION SEQRES 1 A 440 MET PRO LYS LEU VAL THR TRP MET ASN ASN GLN ARG VAL SEQRES 2 A 440 GLY GLU LEU THR LYS LEU ALA ASN GLY ALA HIS THR PHE SEQRES 3 A 440 LYS TYR ALA PRO GLU TRP LEU ALA SER ARG TYR ALA ARG SEQRES 4 A 440 PRO LEU SER LEU SER LEU PRO LEU GLN ARG GLY ASN ILE SEQRES 5 A 440 THR SER ASP ALA VAL PHE ASN PHE PHE ASP ASN LEU LEU SEQRES 6 A 440 PRO ASP SER PRO ILE VAL ARG ASP ARG ILE VAL LYS ARG SEQRES 7 A 440 TYR HIS ALA LYS SER ARG GLN PRO PHE ASP LEU LEU SER SEQRES 8 A 440 GLU ILE GLY ARG ASP SER VAL GLY ALA VAL THR LEU ILE SEQRES 9 A 440 PRO GLU ASP GLU THR VAL THR HIS PRO ILE MET ALA TRP SEQRES 10 A 440 GLU LYS LEU THR GLU ALA ARG LEU GLU GLU VAL LEU THR SEQRES 11 A 440 ALA TYR LYS ALA ASP ILE PRO LEU GLY MET ILE ARG GLU SEQRES 12 A 440 GLU ASN ASP PHE ARG ILE SER VAL ALA GLY ALA GLN GLU SEQRES 13 A 440 LYS THR ALA LEU LEU ARG ILE GLY ASN ASP TRP CYS ILE SEQRES 14 A 440 PRO LYS GLY ILE THR PRO THR THR HIS ILE ILE LYS LEU SEQRES 15 A 440 PRO ILE GLY GLU ILE ARG GLN PRO ASN ALA THR LEU ASP SEQRES 16 A 440 LEU SER GLN SER VAL ASP ASN GLU TYR TYR CYS LEU LEU SEQRES 17 A 440 LEU ALA LYS GLU LEU GLY LEU ASN VAL PRO ASP ALA GLU SEQRES 18 A 440 ILE ILE LYS ALA GLY ASN VAL ARG ALA LEU ALA VAL GLU SEQRES 19 A 440 ARG PHE ASP ARG ARG TRP ASN ALA ARG ARG THR VAL LEU SEQRES 20 A 440 LEU ARG LEU PRO GLN GLU ASP MET CYS GLN THR PHE GLY SEQRES 21 A 440 LEU PRO SER SER VAL LYS TYR GLU SER ASP GLY GLY PRO SEQRES 22 A 440 GLY ILE ALA ARG ILE MET ALA PHE LEU MET GLY SER SER SEQRES 23 A 440 GLU ALA LEU LYS ASP ARG TYR ASP PHE MET LYS PHE GLN SEQRES 24 A 440 VAL PHE GLN TRP LEU ILE GLY ALA THR GLN GLY HIS ALA SEQRES 25 A 440 LYS ASN PHE SER VAL PHE ILE GLN ALA GLY GLY SER TYR SEQRES 26 A 440 ARG LEU THR PRO PHE TYR ASP ILE ILE SER ALA PHE PRO SEQRES 27 A 440 VAL LEU GLY GLY THR GLY ILE HIS ILE SER ASP LEU LYS SEQRES 28 A 440 LEU ALA MET GLY LEU ASN ALA SER LYS GLY LYS LYS THR SEQRES 29 A 440 ALA ILE ASP LYS ILE TYR PRO ARG HIS PHE LEU ALA THR SEQRES 30 A 440 ALA LYS VAL LEU ARG PHE PRO GLU VAL GLN MET HIS GLU SEQRES 31 A 440 ILE LEU SER ASP PHE ALA ARG MET ILE PRO ALA ALA LEU SEQRES 32 A 440 ASP ASN VAL LYS THR SER LEU PRO THR ASP PHE PRO GLU SEQRES 33 A 440 ASN VAL VAL THR ALA VAL GLU SER ASN VAL LEU ARG LEU SEQRES 34 A 440 HIS GLY ARG LEU SER ARG GLU TYR GLY SER LYS SEQRES 1 B 440 MET PRO LYS LEU VAL THR TRP MET ASN ASN GLN ARG VAL SEQRES 2 B 440 GLY GLU LEU THR LYS LEU ALA ASN GLY ALA HIS THR PHE SEQRES 3 B 440 LYS TYR ALA PRO GLU TRP LEU ALA SER ARG TYR ALA ARG SEQRES 4 B 440 PRO LEU SER LEU SER LEU PRO LEU GLN ARG GLY ASN ILE SEQRES 5 B 440 THR SER ASP ALA VAL PHE ASN PHE PHE ASP ASN LEU LEU SEQRES 6 B 440 PRO ASP SER PRO ILE VAL ARG ASP ARG ILE VAL LYS ARG SEQRES 7 B 440 TYR HIS ALA LYS SER ARG GLN PRO PHE ASP LEU LEU SER SEQRES 8 B 440 GLU ILE GLY ARG ASP SER VAL GLY ALA VAL THR LEU ILE SEQRES 9 B 440 PRO GLU ASP GLU THR VAL THR HIS PRO ILE MET ALA TRP SEQRES 10 B 440 GLU LYS LEU THR GLU ALA ARG LEU GLU GLU VAL LEU THR SEQRES 11 B 440 ALA TYR LYS ALA ASP ILE PRO LEU GLY MET ILE ARG GLU SEQRES 12 B 440 GLU ASN ASP PHE ARG ILE SER VAL ALA GLY ALA GLN GLU SEQRES 13 B 440 LYS THR ALA LEU LEU ARG ILE GLY ASN ASP TRP CYS ILE SEQRES 14 B 440 PRO LYS GLY ILE THR PRO THR THR HIS ILE ILE LYS LEU SEQRES 15 B 440 PRO ILE GLY GLU ILE ARG GLN PRO ASN ALA THR LEU ASP SEQRES 16 B 440 LEU SER GLN SER VAL ASP ASN GLU TYR TYR CYS LEU LEU SEQRES 17 B 440 LEU ALA LYS GLU LEU GLY LEU ASN VAL PRO ASP ALA GLU SEQRES 18 B 440 ILE ILE LYS ALA GLY ASN VAL ARG ALA LEU ALA VAL GLU SEQRES 19 B 440 ARG PHE ASP ARG ARG TRP ASN ALA ARG ARG THR VAL LEU SEQRES 20 B 440 LEU ARG LEU PRO GLN GLU ASP MET CYS GLN THR PHE GLY SEQRES 21 B 440 LEU PRO SER SER VAL LYS TYR GLU SER ASP GLY GLY PRO SEQRES 22 B 440 GLY ILE ALA ARG ILE MET ALA PHE LEU MET GLY SER SER SEQRES 23 B 440 GLU ALA LEU LYS ASP ARG TYR ASP PHE MET LYS PHE GLN SEQRES 24 B 440 VAL PHE GLN TRP LEU ILE GLY ALA THR GLN GLY HIS ALA SEQRES 25 B 440 LYS ASN PHE SER VAL PHE ILE GLN ALA GLY GLY SER TYR SEQRES 26 B 440 ARG LEU THR PRO PHE TYR ASP ILE ILE SER ALA PHE PRO SEQRES 27 B 440 VAL LEU GLY GLY THR GLY ILE HIS ILE SER ASP LEU LYS SEQRES 28 B 440 LEU ALA MET GLY LEU ASN ALA SER LYS GLY LYS LYS THR SEQRES 29 B 440 ALA ILE ASP LYS ILE TYR PRO ARG HIS PHE LEU ALA THR SEQRES 30 B 440 ALA LYS VAL LEU ARG PHE PRO GLU VAL GLN MET HIS GLU SEQRES 31 B 440 ILE LEU SER ASP PHE ALA ARG MET ILE PRO ALA ALA LEU SEQRES 32 B 440 ASP ASN VAL LYS THR SER LEU PRO THR ASP PHE PRO GLU SEQRES 33 B 440 ASN VAL VAL THR ALA VAL GLU SER ASN VAL LEU ARG LEU SEQRES 34 B 440 HIS GLY ARG LEU SER ARG GLU TYR GLY SER LYS HET ADP A 500 27 HET MG A 441 1 HET SO4 A 833 5 HET ADP B 501 27 HET MG B 441 1 HET MG B 442 1 HET SO4 B 834 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 3(MG 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 10 HOH *218(H2 O) HELIX 1 1 ALA A 29 SER A 35 1 7 HELIX 2 2 SER A 54 ASN A 63 1 10 HELIX 3 3 SER A 68 TYR A 79 1 12 HELIX 4 4 GLN A 85 GLY A 94 1 10 HELIX 5 5 THR A 121 LEU A 129 1 9 HELIX 6 6 THR A 130 ASP A 135 5 6 HELIX 7 7 ILE A 136 MET A 140 5 5 HELIX 8 8 SER A 199 LEU A 213 1 15 HELIX 9 9 MET A 255 PHE A 259 1 5 HELIX 10 10 PRO A 262 LYS A 266 5 5 HELIX 11 11 TYR A 267 GLY A 271 5 5 HELIX 12 12 GLY A 274 LEU A 282 1 9 HELIX 13 13 MET A 283 SER A 285 5 3 HELIX 14 14 GLU A 287 ILE A 305 1 19 HELIX 15 15 HIS A 311 ASN A 314 5 4 HELIX 16 16 ALA A 321 GLY A 323 5 3 HELIX 17 17 ALA A 336 LEU A 340 5 5 HELIX 18 18 HIS A 346 ASP A 349 5 4 HELIX 19 19 TYR A 370 LEU A 381 1 12 HELIX 20 20 PRO A 384 SER A 409 1 26 HELIX 21 21 PRO A 415 ARG A 435 1 21 HELIX 22 22 ALA B 29 ALA B 34 1 6 HELIX 23 23 SER B 54 ASN B 63 1 10 HELIX 24 24 SER B 68 HIS B 80 1 13 HELIX 25 25 GLN B 85 GLY B 94 1 10 HELIX 26 26 THR B 121 THR B 130 1 10 HELIX 27 27 ALA B 131 ASP B 135 5 5 HELIX 28 28 SER B 199 LEU B 213 1 15 HELIX 29 29 MET B 255 PHE B 259 1 5 HELIX 30 30 PRO B 262 LYS B 266 5 5 HELIX 31 31 TYR B 267 GLY B 271 5 5 HELIX 32 32 GLY B 274 MET B 283 1 10 HELIX 33 33 GLU B 287 ILE B 305 1 19 HELIX 34 34 HIS B 311 ASN B 314 5 4 HELIX 35 35 ALA B 321 GLY B 323 5 3 HELIX 36 36 ALA B 336 LEU B 340 5 5 HELIX 37 37 HIS B 346 ASP B 349 5 4 HELIX 38 38 ASP B 367 ILE B 369 5 3 HELIX 39 39 TYR B 370 LEU B 381 1 12 HELIX 40 40 PRO B 384 SER B 409 1 26 HELIX 41 41 PRO B 415 GLY B 431 1 17 SHEET 1 A 5 ASN A 51 ILE A 52 0 SHEET 2 A 5 HIS A 24 TYR A 28 -1 N PHE A 26 O ILE A 52 SHEET 3 A 5 GLN A 11 LYS A 18 -1 N THR A 17 O THR A 25 SHEET 4 A 5 LYS A 3 MET A 8 -1 N THR A 6 O VAL A 13 SHEET 5 A 5 THR A 102 ILE A 104 -1 O THR A 102 N TRP A 7 SHEET 1 B 6 TRP A 117 LYS A 119 0 SHEET 2 B 6 ASP A 166 PRO A 170 -1 O ILE A 169 N GLU A 118 SHEET 3 B 6 LYS A 157 ILE A 163 -1 N LEU A 161 O CYS A 168 SHEET 4 B 6 HIS A 178 LYS A 181 -1 O ILE A 180 N THR A 158 SHEET 5 B 6 VAL A 228 GLU A 234 -1 O VAL A 233 N ILE A 179 SHEET 6 B 6 ALA A 220 ALA A 225 -1 N ILE A 223 O ALA A 230 SHEET 1 C 2 ARG A 238 TRP A 240 0 SHEET 2 C 2 LEU A 247 ARG A 249 -1 O LEU A 248 N ARG A 239 SHEET 1 D 3 GLN A 252 ASP A 254 0 SHEET 2 D 3 SER A 316 ILE A 319 -1 O VAL A 317 N GLU A 253 SHEET 3 D 3 TYR A 325 LEU A 327 -1 O ARG A 326 N PHE A 318 SHEET 1 E 2 LYS A 351 ASN A 357 0 SHEET 2 E 2 LYS A 362 ALA A 365 -1 O LYS A 363 N LEU A 356 SHEET 1 F 5 ASN B 51 ILE B 52 0 SHEET 2 F 5 HIS B 24 TYR B 28 -1 N PHE B 26 O ILE B 52 SHEET 3 F 5 GLN B 11 LYS B 18 -1 N THR B 17 O THR B 25 SHEET 4 F 5 LEU B 4 MET B 8 -1 N LEU B 4 O LEU B 16 SHEET 5 F 5 THR B 102 PRO B 105 -1 O ILE B 104 N VAL B 5 SHEET 1 G 6 ALA B 116 LYS B 119 0 SHEET 2 G 6 ASP B 166 LYS B 171 -1 O LYS B 171 N ALA B 116 SHEET 3 G 6 LYS B 157 ILE B 163 -1 N LEU B 161 O CYS B 168 SHEET 4 G 6 HIS B 178 LYS B 181 -1 O ILE B 180 N THR B 158 SHEET 5 G 6 VAL B 228 GLU B 234 -1 O VAL B 233 N ILE B 179 SHEET 6 G 6 ALA B 220 ALA B 225 -1 N ILE B 223 O ALA B 230 SHEET 1 H 2 ARG B 238 TRP B 240 0 SHEET 2 H 2 LEU B 247 ARG B 249 -1 O LEU B 248 N ARG B 239 SHEET 1 I 3 GLN B 252 ASP B 254 0 SHEET 2 I 3 SER B 316 ILE B 319 -1 O VAL B 317 N GLU B 253 SHEET 3 I 3 TYR B 325 LEU B 327 -1 O ARG B 326 N PHE B 318 SHEET 1 J 2 LYS B 351 ASN B 357 0 SHEET 2 J 2 LYS B 362 ALA B 365 -1 O THR B 364 N LEU B 352 LINK OD1 ASN A 314 MG MG A 441 1555 1555 2.59 LINK MG MG A 441 O2A ADP A 500 1555 1555 2.68 LINK OD1 ASN B 314 MG MG B 442 1555 1555 2.36 LINK OD1 ASP B 332 MG MG B 441 1555 1555 2.76 LINK OD2 ASP B 332 MG MG B 441 1555 1555 2.79 LINK OD2 ASP B 332 MG MG B 442 1555 1555 2.53 LINK MG MG B 441 O2B ADP B 501 1555 1555 2.66 LINK MG MG B 442 O3B ADP B 501 1555 1555 2.38 LINK MG MG B 442 O2A ADP B 501 1555 1555 2.41 LINK MG MG B 442 O HOH B 536 1555 1555 2.46 SITE 1 AC1 22 VAL A 98 VAL A 151 ALA A 152 GLY A 153 SITE 2 AC1 22 ALA A 154 GLN A 155 LYS A 157 LYS A 181 SITE 3 AC1 22 PRO A 218 VAL A 233 GLU A 234 ARG A 235 SITE 4 AC1 22 PHE A 236 ASP A 237 LYS A 313 ASN A 314 SITE 5 AC1 22 TYR A 331 ASP A 332 MG A 441 HOH A 442 SITE 6 AC1 22 HOH A 465 HOH A 514 SITE 1 AC2 3 ASN A 314 ASP A 332 ADP A 500 SITE 1 AC3 5 SER A 359 LYS A 363 ARG A 372 HIS A 373 SITE 2 AC3 5 HOH A 529 SITE 1 AC4 26 VAL B 98 VAL B 151 ALA B 152 GLY B 153 SITE 2 AC4 26 ALA B 154 GLN B 155 LYS B 157 ILE B 179 SITE 3 AC4 26 LYS B 181 PRO B 218 VAL B 233 GLU B 234 SITE 4 AC4 26 ARG B 235 PHE B 236 ASP B 237 GLN B 252 SITE 5 AC4 26 LYS B 313 ASN B 314 TYR B 331 ASP B 332 SITE 6 AC4 26 MG B 441 MG B 442 HOH B 444 HOH B 471 SITE 7 AC4 26 HOH B 514 HOH B 536 SITE 1 AC5 3 GLN B 155 ASP B 332 ADP B 501 SITE 1 AC6 5 ASN B 314 ASP B 332 HOH B 444 ADP B 501 SITE 2 AC6 5 HOH B 536 SITE 1 AC7 5 ALA B 358 SER B 359 LYS B 363 ARG B 372 SITE 2 AC7 5 HIS B 373 CRYST1 68.600 84.430 69.630 90.00 91.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014577 0.000000 0.000422 0.00000 SCALE2 0.000000 0.011844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014368 0.00000