HEADER OXIDOREDUCTASE 08-SEP-11 3TQ0 TITLE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR DIHYDROOROTATE DEHYDROGENASE IN TITLE 2 COMPLEX WITH FUMARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-312; COMPND 5 EC: 1.3.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 347515; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 GENE: DHODH, LMJF16.0530, LMJF_16_0530; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.T.CORDEIRO,P.R.FELICIANO,M.C.NONATO REVDAT 5 15-NOV-23 3TQ0 1 ATOM REVDAT 4 13-SEP-23 3TQ0 1 REMARK SEQADV REVDAT 3 25-JUL-12 3TQ0 1 FORMUL HET HETATM HETNAM REVDAT 2 04-JUL-12 3TQ0 1 JRNL REVDAT 1 16-MAY-12 3TQ0 0 JRNL AUTH A.T.CORDEIRO,P.R.FELICIANO,M.P.PINHEIRO,M.C.NONATO JRNL TITL CRYSTAL STRUCTURE OF DIHYDROOROTATE DEHYDROGENASE FROM JRNL TITL 2 LEISHMANIA MAJOR. JRNL REF BIOCHIMIE V. 94 1739 2012 JRNL REFN ISSN 0300-9084 JRNL PMID 22542640 JRNL DOI 10.1016/J.BIOCHI.2012.04.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3093 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4743 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5043 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6854 ; 1.347 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 644 ; 5.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;40.902 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;12.173 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3843 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3155 ; 0.466 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5075 ; 0.912 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1888 ; 1.527 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1774 ; 2.484 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3TQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.427 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60966 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.812 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 10.55 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 8.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3GYE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, PH 5.6, 1.3 M LITHIUM SULFATE, 0.3 M AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.78267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.56533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.17400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.95667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.39133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ALA A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 MET B -33 REMARK 465 GLY B -32 REMARK 465 SER B -31 REMARK 465 SER B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 SER B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 VAL B -19 REMARK 465 PRO B -18 REMARK 465 ALA B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 105 CD NE CZ NH1 NH2 REMARK 470 GLU A 109 CD OE1 OE2 REMARK 470 LYS A 112 CE NZ REMARK 470 GLU B 86 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 24 26.65 -163.53 REMARK 500 SER A 130 33.16 -146.23 REMARK 500 PRO A 159 42.37 -84.69 REMARK 500 CYS B 24 35.44 -156.76 REMARK 500 SER B 130 26.33 -142.85 REMARK 500 ASN B 195 -179.87 -69.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUM A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUM B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 315 DBREF 3TQ0 A 1 312 UNP Q4QEW7 Q4QEW7_LEIMA 1 312 DBREF 3TQ0 B 1 312 UNP Q4QEW7 Q4QEW7_LEIMA 1 312 SEQADV 3TQ0 MET A -33 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -32 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A -31 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A -30 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -29 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -28 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -27 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -26 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -25 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -24 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A -23 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A -22 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -21 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 LEU A -20 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 VAL A -19 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 PRO A -18 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 ALA A -17 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -16 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A -15 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS A -14 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET A -13 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 ALA A -12 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A -11 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET A -10 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 THR A -9 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -8 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -7 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLN A -6 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLN A -5 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET A -4 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -3 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 ARG A -2 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY A -1 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER A 0 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET B -33 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -32 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B -31 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B -30 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -29 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -28 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -27 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -26 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -25 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -24 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B -23 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B -22 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -21 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 LEU B -20 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 VAL B -19 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 PRO B -18 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 ALA B -17 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -16 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B -15 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 HIS B -14 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET B -13 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 ALA B -12 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B -11 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET B -10 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 THR B -9 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -8 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -7 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLN B -6 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLN B -5 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 MET B -4 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -3 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 ARG B -2 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 GLY B -1 UNP Q4QEW7 EXPRESSION TAG SEQADV 3TQ0 SER B 0 UNP Q4QEW7 EXPRESSION TAG SEQRES 1 A 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 346 LEU VAL PRO ALA GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 346 GLY GLN GLN MET GLY ARG GLY SER MET SER LEU GLN VAL SEQRES 4 A 346 ASN LEU LEU ASN ASN THR PHE ALA ASN PRO PHE MET ASN SEQRES 5 A 346 ALA ALA GLY VAL MET CYS THR THR THR GLU GLU LEU VAL SEQRES 6 A 346 ALA MET THR GLU SER ALA SER GLY SER LEU VAL SER LYS SEQRES 7 A 346 SER CYS THR PRO ALA LEU ARG GLU GLY ASN PRO THR PRO SEQRES 8 A 346 ARG TYR GLN ALA LEU PRO LEU GLY SER ILE ASN SER MET SEQRES 9 A 346 GLY LEU PRO ASN ASN GLY PHE ASP PHE TYR LEU ALA TYR SEQRES 10 A 346 ALA ALA GLU GLN HIS ASP TYR GLY LYS LYS PRO LEU PHE SEQRES 11 A 346 LEU SER MET SER GLY LEU SER MET ARG GLU ASN VAL GLU SEQRES 12 A 346 MET CYS LYS ARG LEU ALA ALA VAL ALA THR GLU LYS GLY SEQRES 13 A 346 VAL ILE LEU GLU LEU ASN LEU SER CYS PRO ASN VAL PRO SEQRES 14 A 346 GLY LYS PRO GLN VAL ALA TYR ASP PHE ASP ALA MET ARG SEQRES 15 A 346 GLN CYS LEU THR ALA VAL SER GLU VAL TYR PRO HIS SER SEQRES 16 A 346 PHE GLY VAL LYS MET PRO PRO TYR PHE ASP PHE ALA HIS SEQRES 17 A 346 PHE ASP ALA ALA ALA GLU ILE LEU ASN GLU PHE PRO LYS SEQRES 18 A 346 VAL GLN PHE ILE THR CYS ILE ASN SER ILE GLY ASN GLY SEQRES 19 A 346 LEU VAL ILE ASP ALA GLU THR GLU SER VAL VAL ILE LYS SEQRES 20 A 346 PRO LYS GLN GLY PHE GLY GLY LEU GLY GLY ARG TYR VAL SEQRES 21 A 346 LEU PRO THR ALA LEU ALA ASN ILE ASN ALA PHE TYR ARG SEQRES 22 A 346 ARG CYS PRO GLY LYS LEU ILE PHE GLY CYS GLY GLY VAL SEQRES 23 A 346 TYR THR GLY GLU ASP ALA PHE LEU HIS VAL LEU ALA GLY SEQRES 24 A 346 ALA SER MET VAL GLN VAL GLY THR ALA LEU GLN GLU GLU SEQRES 25 A 346 GLY PRO SER ILE PHE GLU ARG LEU THR SER GLU LEU LEU SEQRES 26 A 346 GLY VAL MET ALA LYS LYS ARG TYR GLN THR LEU ASP GLU SEQRES 27 A 346 PHE ARG GLY LYS VAL ARG THR LEU SEQRES 1 B 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 346 LEU VAL PRO ALA GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 346 GLY GLN GLN MET GLY ARG GLY SER MET SER LEU GLN VAL SEQRES 4 B 346 ASN LEU LEU ASN ASN THR PHE ALA ASN PRO PHE MET ASN SEQRES 5 B 346 ALA ALA GLY VAL MET CYS THR THR THR GLU GLU LEU VAL SEQRES 6 B 346 ALA MET THR GLU SER ALA SER GLY SER LEU VAL SER LYS SEQRES 7 B 346 SER CYS THR PRO ALA LEU ARG GLU GLY ASN PRO THR PRO SEQRES 8 B 346 ARG TYR GLN ALA LEU PRO LEU GLY SER ILE ASN SER MET SEQRES 9 B 346 GLY LEU PRO ASN ASN GLY PHE ASP PHE TYR LEU ALA TYR SEQRES 10 B 346 ALA ALA GLU GLN HIS ASP TYR GLY LYS LYS PRO LEU PHE SEQRES 11 B 346 LEU SER MET SER GLY LEU SER MET ARG GLU ASN VAL GLU SEQRES 12 B 346 MET CYS LYS ARG LEU ALA ALA VAL ALA THR GLU LYS GLY SEQRES 13 B 346 VAL ILE LEU GLU LEU ASN LEU SER CYS PRO ASN VAL PRO SEQRES 14 B 346 GLY LYS PRO GLN VAL ALA TYR ASP PHE ASP ALA MET ARG SEQRES 15 B 346 GLN CYS LEU THR ALA VAL SER GLU VAL TYR PRO HIS SER SEQRES 16 B 346 PHE GLY VAL LYS MET PRO PRO TYR PHE ASP PHE ALA HIS SEQRES 17 B 346 PHE ASP ALA ALA ALA GLU ILE LEU ASN GLU PHE PRO LYS SEQRES 18 B 346 VAL GLN PHE ILE THR CYS ILE ASN SER ILE GLY ASN GLY SEQRES 19 B 346 LEU VAL ILE ASP ALA GLU THR GLU SER VAL VAL ILE LYS SEQRES 20 B 346 PRO LYS GLN GLY PHE GLY GLY LEU GLY GLY ARG TYR VAL SEQRES 21 B 346 LEU PRO THR ALA LEU ALA ASN ILE ASN ALA PHE TYR ARG SEQRES 22 B 346 ARG CYS PRO GLY LYS LEU ILE PHE GLY CYS GLY GLY VAL SEQRES 23 B 346 TYR THR GLY GLU ASP ALA PHE LEU HIS VAL LEU ALA GLY SEQRES 24 B 346 ALA SER MET VAL GLN VAL GLY THR ALA LEU GLN GLU GLU SEQRES 25 B 346 GLY PRO SER ILE PHE GLU ARG LEU THR SER GLU LEU LEU SEQRES 26 B 346 GLY VAL MET ALA LYS LYS ARG TYR GLN THR LEU ASP GLU SEQRES 27 B 346 PHE ARG GLY LYS VAL ARG THR LEU HET FMN A 313 31 HET FUM A 314 8 HET GOL A 315 6 HET NI A 316 2 HET SO4 A 317 5 HET SO4 A 318 5 HET SO4 A 319 5 HET SO4 A 320 5 HET FMN B 313 31 HET FUM B 314 8 HET GOL B 315 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM FUM FUMARIC ACID HETNAM GOL GLYCEROL HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 FUM 2(C4 H4 O4) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 NI NI 2+ FORMUL 7 SO4 4(O4 S 2-) FORMUL 14 HOH *388(H2 O) HELIX 1 1 THR A 26 SER A 36 1 11 HELIX 2 2 GLY A 76 GLN A 87 1 12 HELIX 3 3 SER A 103 GLY A 122 1 20 HELIX 4 4 GLN A 139 TYR A 142 5 4 HELIX 5 5 ASP A 143 TYR A 158 1 16 HELIX 6 6 ASP A 171 ASN A 183 1 13 HELIX 7 7 LYS A 213 GLN A 216 5 4 HELIX 8 8 GLY A 223 TYR A 225 5 3 HELIX 9 9 VAL A 226 CYS A 241 1 16 HELIX 10 10 THR A 254 GLY A 265 1 12 HELIX 11 11 GLY A 272 GLY A 279 1 8 HELIX 12 12 SER A 281 ARG A 298 1 18 HELIX 13 13 THR A 301 PHE A 305 5 5 HELIX 14 14 THR B 26 SER B 36 1 11 HELIX 15 15 GLY B 76 GLN B 87 1 12 HELIX 16 16 SER B 103 GLY B 122 1 20 HELIX 17 17 GLN B 139 TYR B 142 5 4 HELIX 18 18 ASP B 143 TYR B 158 1 16 HELIX 19 19 ASP B 171 ASN B 183 1 13 HELIX 20 20 LYS B 213 GLN B 216 5 4 HELIX 21 21 GLY B 223 TYR B 225 5 3 HELIX 22 22 VAL B 226 CYS B 241 1 16 HELIX 23 23 THR B 254 GLY B 265 1 12 HELIX 24 24 GLY B 272 GLU B 277 1 6 HELIX 25 25 SER B 281 ARG B 298 1 18 HELIX 26 26 THR B 301 PHE B 305 5 5 SHEET 1 A 2 VAL A 5 LEU A 7 0 SHEET 2 A 2 ASN A 10 PHE A 12 -1 O PHE A 12 N VAL A 5 SHEET 1 B 8 PHE A 16 ASN A 18 0 SHEET 2 B 8 ALA A 266 VAL A 271 1 O VAL A 271 N MET A 17 SHEET 3 B 8 LEU A 245 CYS A 249 1 N GLY A 248 O GLN A 270 SHEET 4 B 8 VAL A 188 CYS A 193 1 N ILE A 191 O PHE A 247 SHEET 5 B 8 PHE A 162 MET A 166 1 N VAL A 164 O THR A 192 SHEET 6 B 8 ILE A 124 ASN A 128 1 N LEU A 127 O GLY A 163 SHEET 7 B 8 LEU A 95 MET A 99 1 N MET A 99 O ASN A 128 SHEET 8 B 8 LEU A 41 CYS A 46 1 N LEU A 41 O PHE A 96 SHEET 1 C 4 TYR A 59 LEU A 62 0 SHEET 2 C 4 GLY A 65 ASN A 68 -1 O GLY A 65 N LEU A 62 SHEET 3 C 4 PHE A 218 GLY A 222 -1 O GLY A 220 N ASN A 68 SHEET 4 C 4 ILE A 197 LEU A 201 -1 N ILE A 197 O LEU A 221 SHEET 1 D 2 ILE A 203 ASP A 204 0 SHEET 2 D 2 SER A 209 VAL A 210 -1 O SER A 209 N ASP A 204 SHEET 1 E 2 VAL B 5 LEU B 7 0 SHEET 2 E 2 ASN B 10 PHE B 12 -1 O PHE B 12 N VAL B 5 SHEET 1 F 8 PHE B 16 ASN B 18 0 SHEET 2 F 8 ALA B 266 VAL B 271 1 O VAL B 271 N MET B 17 SHEET 3 F 8 LEU B 245 CYS B 249 1 N ILE B 246 O SER B 267 SHEET 4 F 8 VAL B 188 CYS B 193 1 N ILE B 191 O PHE B 247 SHEET 5 F 8 PHE B 162 MET B 166 1 N VAL B 164 O THR B 192 SHEET 6 F 8 ILE B 124 ASN B 128 1 N LEU B 127 O GLY B 163 SHEET 7 F 8 LEU B 95 MET B 99 1 N MET B 99 O ASN B 128 SHEET 8 F 8 LEU B 41 CYS B 46 1 N LEU B 41 O PHE B 96 SHEET 1 G 4 TYR B 59 LEU B 62 0 SHEET 2 G 4 GLY B 65 ASN B 68 -1 O GLY B 65 N LEU B 62 SHEET 3 G 4 PHE B 218 GLY B 222 -1 O GLY B 220 N ASN B 68 SHEET 4 G 4 ILE B 197 LEU B 201 -1 N ILE B 197 O LEU B 221 SHEET 1 H 2 ILE B 203 ASP B 204 0 SHEET 2 H 2 SER B 209 VAL B 210 -1 O SER B 209 N ASP B 204 LINK NI B NI A 316 O HOH A 389 1555 1555 2.48 LINK NI A NI A 316 O HOH B 390 1555 1555 2.50 CISPEP 1 THR A 56 PRO A 57 0 -0.08 CISPEP 2 CYS A 193 ILE A 194 0 14.06 CISPEP 3 THR B 56 PRO B 57 0 -1.50 CISPEP 4 CYS B 193 ILE B 194 0 13.71 SITE 1 AC1 25 ALA A 19 ALA A 20 GLY A 21 LYS A 44 SITE 2 AC1 25 SER A 45 TYR A 59 ASN A 68 MET A 70 SITE 3 AC1 25 ASN A 128 LYS A 165 ILE A 194 ASN A 195 SITE 4 AC1 25 GLY A 222 GLY A 223 VAL A 226 CYS A 249 SITE 5 AC1 25 GLY A 250 GLY A 251 GLY A 272 THR A 273 SITE 6 AC1 25 FUM A 314 HOH A 334 HOH A 341 HOH A 357 SITE 7 AC1 25 HOH A 365 SITE 1 AC2 12 LYS A 44 ASN A 68 MET A 70 GLY A 71 SITE 2 AC2 12 LEU A 72 ASN A 128 CYS A 131 PRO A 132 SITE 3 AC2 12 ASN A 133 ASN A 195 FMN A 313 HOH A 356 SITE 1 AC3 6 VAL A 202 ILE A 203 HOH A 390 HOH A 418 SITE 2 AC3 6 LEU B 227 LEU B 231 SITE 1 AC4 2 HOH A 389 HOH B 390 SITE 1 AC5 3 PRO A 159 HIS A 160 SER A 161 SITE 1 AC6 3 PRO A 159 LYS A 187 HOH A 459 SITE 1 AC7 2 ARG A 239 THR A 311 SITE 1 AC8 4 TYR A 238 ARG A 306 HOH A 470 HOH A 501 SITE 1 AC9 25 ALA B 19 ALA B 20 GLY B 21 LYS B 44 SITE 2 AC9 25 SER B 45 TYR B 59 ASN B 68 MET B 70 SITE 3 AC9 25 ASN B 128 LYS B 165 ILE B 194 ASN B 195 SITE 4 AC9 25 GLY B 222 GLY B 223 VAL B 226 CYS B 249 SITE 5 AC9 25 GLY B 250 GLY B 251 GLY B 272 THR B 273 SITE 6 AC9 25 FUM B 314 HOH B 343 HOH B 353 HOH B 355 SITE 7 AC9 25 HOH B 368 SITE 1 BC1 12 LYS B 44 ASN B 68 MET B 70 GLY B 71 SITE 2 BC1 12 LEU B 72 ASN B 128 CYS B 131 PRO B 132 SITE 3 BC1 12 ASN B 133 ASN B 195 FMN B 313 HOH B 349 SITE 1 BC2 6 LEU A 227 LEU A 231 VAL B 202 ILE B 203 SITE 2 BC2 6 HOH B 354 HOH B 441 CRYST1 140.833 140.833 68.348 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007101 0.004100 0.000000 0.00000 SCALE2 0.000000 0.008199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014631 0.00000