HEADER TRANSCRIPTION/DNA 09-SEP-11 3TQ6 TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TRANSCRIPTION FACTOR A, TFAM TITLE 2 OR MTTFA, BOUND TO THE LIGHT STRAND PROMOTER LSP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR A, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MTTFA, MITOCHONDRIAL TRANSCRIPTION FACTOR 1, MTTF1, COMPND 5 TRANSCRIPTION FACTOR 6, TCF-6, TRANSCRIPTION FACTOR 6-LIKE 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*CP*CP*AP*AP*CP*(BRU) COMPND 10 P*AP*AP*C)-3'); COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: NT 424-445 LSP; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(*GP*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*TP*GP*AP*CP*TP*GP*TP*TP*A)- COMPND 17 3'); COMPND 18 CHAIN: D, F; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: NT 424-445 LSP, COMPLEMENTARY SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CR407653.1, TCF6, TCF6L2, TFAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. DNA NT 424- SOURCE 16 445 LSP; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. SOURCE 22 COMPLEMENTARY DNA NT 424-445 LSP KEYWDS TRANSCRIPTION, TRANSCRIPTION REGULATION, MITOCHONDRION, DNA-BINDING, KEYWDS 2 HMGB-UBF_HMG-BOX, MINOR GROOVE, TANDEM HMG BOXES, TRANSCRIPTION-DNA KEYWDS 3 COMPLEX, MITOCHONDRIAL NUCLEOID, LIGHT-STRAND MITOCHONDRIAL KEYWDS 4 PROMOTER, LSP EXPDTA X-RAY DIFFRACTION AUTHOR A.RUBIO-COSIALS,J.F.SYDOW,N.JIMENEZ-MENENDEZ,P.FERNANDEZ-MILLAN, AUTHOR 2 J.MONTOYA,H.T.JACOBS,M.COLL,P.BERNADO,M.SOLA REVDAT 4 28-FEB-24 3TQ6 1 REMARK SEQADV LINK REVDAT 3 16-NOV-11 3TQ6 1 JRNL REVDAT 2 09-NOV-11 3TQ6 1 JRNL REVDAT 1 02-NOV-11 3TQ6 0 JRNL AUTH A.RUBIO-COSIALS,J.F.SIDOW,N.JIMENEZ-MENENDEZ, JRNL AUTH 2 P.FERNANDEZ-MILLAN,J.MONTOYA,H.T.JACOBS,M.COLL,P.BERNADO, JRNL AUTH 3 M.SOLA JRNL TITL HUMAN MITOCHONDRIAL TRANSCRIPTION FACTOR A INDUCES A U-TURN JRNL TITL 2 STRUCTURE IN THE LIGHT STRAND PROMOTER. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1281 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22037172 JRNL DOI 10.1038/NSMB.2160 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.480 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.48 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2954 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2111 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2851 REMARK 3 BIN R VALUE (WORKING SET) : 0.2084 REMARK 3 BIN FREE R VALUE : 0.2836 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 103 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3237 REMARK 3 NUCLEIC ACID ATOMS : 1792 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.93620 REMARK 3 B22 (A**2) : -8.05740 REMARK 3 B33 (A**2) : 4.12120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.309 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5380 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7593 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2293 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 108 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 588 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5380 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 686 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 94 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5465 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.83 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.65 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.2151 33.8141 -15.0633 REMARK 3 T TENSOR REMARK 3 T11: -0.0330 T22: -0.0101 REMARK 3 T33: -0.1198 T12: 0.0102 REMARK 3 T13: 0.0543 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.8527 L22: 0.7703 REMARK 3 L33: 0.3816 L12: -0.5612 REMARK 3 L13: 0.3934 L23: -0.2789 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: -0.0313 S13: 0.0827 REMARK 3 S21: -0.1221 S22: -0.0259 S23: -0.0886 REMARK 3 S31: -0.0674 S32: -0.0425 S33: -0.0537 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -47.5905 19.7731 -10.5944 REMARK 3 T TENSOR REMARK 3 T11: -0.1113 T22: 0.0013 REMARK 3 T33: -0.0847 T12: 0.0174 REMARK 3 T13: -0.0319 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4205 L22: 1.2388 REMARK 3 L33: 0.6045 L12: -0.6371 REMARK 3 L13: -0.2399 L23: 0.1050 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: 0.0111 S13: -0.0172 REMARK 3 S21: -0.0930 S22: -0.0043 S23: 0.1290 REMARK 3 S31: 0.0077 S32: -0.0886 S33: -0.0319 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -24.0136 38.4397 -14.8951 REMARK 3 T TENSOR REMARK 3 T11: -0.0608 T22: -0.0478 REMARK 3 T33: -0.0023 T12: 0.0079 REMARK 3 T13: 0.0558 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.3396 L22: 2.8134 REMARK 3 L33: 0.0000 L12: -1.0407 REMARK 3 L13: 0.8084 L23: -1.3389 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0122 S13: -0.0967 REMARK 3 S21: 0.0312 S22: -0.1207 S23: -0.2511 REMARK 3 S31: 0.0262 S32: -0.1327 S33: 0.1003 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.3957 36.1384 -15.0827 REMARK 3 T TENSOR REMARK 3 T11: -0.0216 T22: -0.0211 REMARK 3 T33: -0.0262 T12: -0.0039 REMARK 3 T13: 0.0560 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.6322 L22: 3.3082 REMARK 3 L33: 0.0000 L12: -2.7607 REMARK 3 L13: 0.8747 L23: -0.3390 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.0502 S13: -0.1293 REMARK 3 S21: 0.0442 S22: -0.0705 S23: -0.0609 REMARK 3 S31: 0.1292 S32: -0.0987 S33: 0.1072 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): -45.5123 15.3216 -9.2941 REMARK 3 T TENSOR REMARK 3 T11: -0.0701 T22: -0.0084 REMARK 3 T33: 0.0073 T12: 0.0047 REMARK 3 T13: -0.0217 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.6481 L22: 2.9159 REMARK 3 L33: 0.0000 L12: -2.0984 REMARK 3 L13: 0.3204 L23: -0.8070 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0531 S13: -0.0409 REMARK 3 S21: -0.0132 S22: 0.0473 S23: 0.1758 REMARK 3 S31: -0.0707 S32: 0.0739 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): -47.0292 17.3789 -10.2617 REMARK 3 T TENSOR REMARK 3 T11: -0.1001 T22: 0.0471 REMARK 3 T33: -0.0992 T12: 0.0301 REMARK 3 T13: -0.0140 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.6447 L22: 5.1250 REMARK 3 L33: 0.4432 L12: -4.6403 REMARK 3 L13: 1.1658 L23: -1.6626 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0456 S13: -0.0108 REMARK 3 S21: -0.0040 S22: 0.0300 S23: 0.2291 REMARK 3 S31: -0.2520 S32: -0.0649 S33: -0.0231 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : MONOCHROMATOR (HORIZONTALLY SIDE REMARK 200 DIFFRACTING SILICON 111 CRYSTAL) REMARK 200 OPTICS : FOCUSING MIRRORS: ONE PAIR OF REMARK 200 (300X40X15) MM3 LONG PT COATED REMARK 200 SI MIRROR, 260MM USABLE, IN A REMARK 200 KIRKPATRICK-BAEZ GEOMETRY; REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% (V/V) PEG1000, 300 MM SODIUM REMARK 280 CHLORIDE, 0.1 M NA,K-PHOSPHATE, PH 6.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.95000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 GLN A 238 REMARK 465 ARG A 239 REMARK 465 LYS A 240 REMARK 465 TYR A 241 REMARK 465 GLY A 242 REMARK 465 ALA A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 CYS A 246 REMARK 465 LEU A 247 REMARK 465 GLN A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 MET B 41 REMARK 465 GLY B 42 REMARK 465 SER B 43 REMARK 465 THR B 234 REMARK 465 ILE B 235 REMARK 465 LYS B 236 REMARK 465 LYS B 237 REMARK 465 GLN B 238 REMARK 465 ARG B 239 REMARK 465 LYS B 240 REMARK 465 TYR B 241 REMARK 465 GLY B 242 REMARK 465 ALA B 243 REMARK 465 GLU B 244 REMARK 465 GLU B 245 REMARK 465 CYS B 246 REMARK 465 LEU B 247 REMARK 465 GLN B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 5 O3' DA C 5 C3' -0.046 REMARK 500 DC C 14 O3' DC C 14 C3' -0.037 REMARK 500 BRU C 19 O3' DA C 20 P -0.160 REMARK 500 DG D 5 O3' DG D 5 C3' -0.042 REMARK 500 DG D 8 O3' DG D 8 C3' -0.048 REMARK 500 DG D 9 O3' DG D 9 C3' -0.046 REMARK 500 BRU E 19 O3' DA E 20 P -0.165 REMARK 500 DG F 9 O3' DG F 9 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DA C 2 O4' - C1' - C2' ANGL. DEV. = 3.5 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 7 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 12 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC C 15 O4' - C1' - C2' ANGL. DEV. = 3.8 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 DA C 16 O5' - P - OP2 ANGL. DEV. = -7.4 DEGREES REMARK 500 DA C 16 C5' - C4' - O4' ANGL. DEV. = 7.0 DEGREES REMARK 500 DA C 16 C1' - O4' - C4' ANGL. DEV. = -8.0 DEGREES REMARK 500 DA C 17 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 BRU C 19 C3' - O3' - P ANGL. DEV. = 38.7 DEGREES REMARK 500 DA C 20 O3' - P - O5' ANGL. DEV. = 16.9 DEGREES REMARK 500 DA C 20 O3' - P - OP1 ANGL. DEV. = -13.2 DEGREES REMARK 500 DA C 20 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DA C 21 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG D 1 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 3 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG D 5 C4 - C5 - N7 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG D 5 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 DT D 6 C5' - C4' - O4' ANGL. DEV. = 6.6 DEGREES REMARK 500 DT D 6 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT D 7 C4 - C5 - C7 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG D 8 O4' - C4' - C3' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D 11 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG D 12 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 17 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DT D 18 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 19 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 19 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT D 20 C4 - C5 - C7 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT D 20 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA D 22 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA E 2 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DA E 2 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DC E 4 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DC E 4 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT E 7 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT E 7 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT E 7 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DA E 9 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 82 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG E 502 DBREF 3TQ6 A 43 246 UNP Q00059 TFAM_HUMAN 43 246 DBREF 3TQ6 B 43 246 UNP Q00059 TFAM_HUMAN 43 246 DBREF 3TQ6 C 1 22 PDB 3TQ6 3TQ6 1 22 DBREF 3TQ6 E 1 22 PDB 3TQ6 3TQ6 1 22 DBREF 3TQ6 D 1 22 PDB 3TQ6 3TQ6 1 22 DBREF 3TQ6 F 1 22 PDB 3TQ6 3TQ6 1 22 SEQADV 3TQ6 MET A 41 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 GLY A 42 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 LEU A 247 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 GLN A 248 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS A 249 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS A 250 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS A 251 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS A 252 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS A 253 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS A 254 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 MET B 41 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 GLY B 42 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 LEU B 247 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 GLN B 248 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS B 249 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS B 250 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS B 251 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS B 252 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS B 253 UNP Q00059 EXPRESSION TAG SEQADV 3TQ6 HIS B 254 UNP Q00059 EXPRESSION TAG SEQRES 1 A 214 MET GLY SER SER VAL LEU ALA SER CYS PRO LYS LYS PRO SEQRES 2 A 214 VAL SER SER TYR LEU ARG PHE SER LYS GLU GLN LEU PRO SEQRES 3 A 214 ILE PHE LYS ALA GLN ASN PRO ASP ALA LYS THR THR GLU SEQRES 4 A 214 LEU ILE ARG ARG ILE ALA GLN ARG TRP ARG GLU LEU PRO SEQRES 5 A 214 ASP SER LYS LYS LYS ILE TYR GLN ASP ALA TYR ARG ALA SEQRES 6 A 214 GLU TRP GLN VAL TYR LYS GLU GLU ILE SER ARG PHE LYS SEQRES 7 A 214 GLU GLN LEU THR PRO SER GLN ILE MET SER LEU GLU LYS SEQRES 8 A 214 GLU ILE MET ASP LYS HIS LEU LYS ARG LYS ALA MET THR SEQRES 9 A 214 LYS LYS LYS GLU LEU THR LEU LEU GLY LYS PRO LYS ARG SEQRES 10 A 214 PRO ARG SER ALA TYR ASN VAL TYR VAL ALA GLU ARG PHE SEQRES 11 A 214 GLN GLU ALA LYS GLY ASP SER PRO GLN GLU LYS LEU LYS SEQRES 12 A 214 THR VAL LYS GLU ASN TRP LYS ASN LEU SER ASP SER GLU SEQRES 13 A 214 LYS GLU LEU TYR ILE GLN HIS ALA LYS GLU ASP GLU THR SEQRES 14 A 214 ARG TYR HIS ASN GLU MET LYS SER TRP GLU GLU GLN MET SEQRES 15 A 214 ILE GLU VAL GLY ARG LYS ASP LEU LEU ARG ARG THR ILE SEQRES 16 A 214 LYS LYS GLN ARG LYS TYR GLY ALA GLU GLU CYS LEU GLN SEQRES 17 A 214 HIS HIS HIS HIS HIS HIS SEQRES 1 B 214 MET GLY SER SER VAL LEU ALA SER CYS PRO LYS LYS PRO SEQRES 2 B 214 VAL SER SER TYR LEU ARG PHE SER LYS GLU GLN LEU PRO SEQRES 3 B 214 ILE PHE LYS ALA GLN ASN PRO ASP ALA LYS THR THR GLU SEQRES 4 B 214 LEU ILE ARG ARG ILE ALA GLN ARG TRP ARG GLU LEU PRO SEQRES 5 B 214 ASP SER LYS LYS LYS ILE TYR GLN ASP ALA TYR ARG ALA SEQRES 6 B 214 GLU TRP GLN VAL TYR LYS GLU GLU ILE SER ARG PHE LYS SEQRES 7 B 214 GLU GLN LEU THR PRO SER GLN ILE MET SER LEU GLU LYS SEQRES 8 B 214 GLU ILE MET ASP LYS HIS LEU LYS ARG LYS ALA MET THR SEQRES 9 B 214 LYS LYS LYS GLU LEU THR LEU LEU GLY LYS PRO LYS ARG SEQRES 10 B 214 PRO ARG SER ALA TYR ASN VAL TYR VAL ALA GLU ARG PHE SEQRES 11 B 214 GLN GLU ALA LYS GLY ASP SER PRO GLN GLU LYS LEU LYS SEQRES 12 B 214 THR VAL LYS GLU ASN TRP LYS ASN LEU SER ASP SER GLU SEQRES 13 B 214 LYS GLU LEU TYR ILE GLN HIS ALA LYS GLU ASP GLU THR SEQRES 14 B 214 ARG TYR HIS ASN GLU MET LYS SER TRP GLU GLU GLN MET SEQRES 15 B 214 ILE GLU VAL GLY ARG LYS ASP LEU LEU ARG ARG THR ILE SEQRES 16 B 214 LYS LYS GLN ARG LYS TYR GLY ALA GLU GLU CYS LEU GLN SEQRES 17 B 214 HIS HIS HIS HIS HIS HIS SEQRES 1 C 22 DT DA DA DC DA DG DT DC DA DC DC DC DC SEQRES 2 C 22 DC DC DA DA DC BRU DA DA DC SEQRES 1 D 22 DG DT DT DA DG DT DT DG DG DG DG DG DG SEQRES 2 D 22 DT DG DA DC DT DG DT DT DA SEQRES 1 E 22 DT DA DA DC DA DG DT DC DA DC DC DC DC SEQRES 2 E 22 DC DC DA DA DC BRU DA DA DC SEQRES 1 F 22 DG DT DT DA DG DT DT DG DG DG DG DG DG SEQRES 2 F 22 DT DG DA DC DT DG DT DT DA MODRES 3TQ6 BRU C 19 DU MODRES 3TQ6 BRU E 19 DU HET BRU C 19 20 HET BRU E 19 20 HET 1PE B 501 16 HET PO4 C 503 5 HET PEG E 502 7 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 1PE PEG400 FORMUL 3 BRU 2(C9 H12 BR N2 O8 P) FORMUL 7 1PE C10 H22 O6 FORMUL 8 PO4 O4 P 3- FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *186(H2 O) HELIX 1 1 SER A 44 CYS A 49 1 6 HELIX 2 2 SER A 55 ASN A 72 1 18 HELIX 3 3 LYS A 76 LEU A 91 1 16 HELIX 4 4 PRO A 92 LEU A 121 1 30 HELIX 5 5 THR A 122 LEU A 152 1 31 HELIX 6 6 SER A 160 PHE A 170 1 11 HELIX 7 7 SER A 177 ASN A 191 1 15 HELIX 8 8 SER A 193 VAL A 225 1 33 HELIX 9 9 ARG A 227 LEU A 231 5 5 HELIX 10 10 VAL B 45 CYS B 49 1 5 HELIX 11 11 SER B 55 ASN B 72 1 18 HELIX 12 12 LYS B 76 LEU B 91 1 16 HELIX 13 13 PRO B 92 GLN B 120 1 29 HELIX 14 14 THR B 122 LEU B 152 1 31 HELIX 15 15 SER B 160 PHE B 170 1 11 HELIX 16 16 SER B 177 LYS B 190 1 14 HELIX 17 17 SER B 193 VAL B 225 1 33 HELIX 18 18 ARG B 227 LEU B 231 5 5 LINK O3' DC C 18 P BRU C 19 1555 1555 1.54 LINK O3' BRU C 19 P DA C 20 1555 1555 1.45 LINK O3' DC E 18 P BRU E 19 1555 1555 1.64 LINK O3' BRU E 19 P DA E 20 1555 1555 1.44 SITE 1 AC1 2 LYS B 118 GLU B 130 SITE 1 AC2 6 DC C 14 DC C 15 DA C 16 DA C 17 SITE 2 AC2 6 HOH C 532 HOH D 536 SITE 1 AC3 4 DC E 15 DA E 16 DA E 17 DC E 18 CRYST1 113.900 117.200 56.530 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017690 0.00000