HEADER LIGASE 09-SEP-11 3TQO TITLE STRUCTURE OF THE CYSTEINYL-TRNA SYNTHETASE (CYSS) FROM COXIELLA TITLE 2 BURNETII. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE--TRNA LIGASE, CYSRS; COMPND 5 EC: 6.1.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXIELLA BURNETII; SOURCE 3 ORGANISM_TAXID: 777; SOURCE 4 STRAIN: RSA493; SOURCE 5 GENE: CYSS, CBU_1487; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PROTEIN SYNTHESIS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RUDOLPH,J.CHEUNG,M.C.FRANKLIN,M.CASSIDY,E.GARY,F.BURSHTEYN,J.LOVE REVDAT 6 06-NOV-24 3TQO 1 REMARK SEQADV LINK REVDAT 5 08-NOV-17 3TQO 1 REMARK REVDAT 4 10-FEB-16 3TQO 1 JRNL REVDAT 3 21-OCT-15 3TQO 1 JRNL REVDAT 2 24-JUN-15 3TQO 1 JRNL REVDAT 1 28-SEP-11 3TQO 0 JRNL AUTH M.C.FRANKLIN,J.CHEUNG,M.J.RUDOLPH,F.BURSHTEYN,M.CASSIDY, JRNL AUTH 2 E.GARY,B.HILLERICH,Z.K.YAO,P.R.CARLIER,M.TOTROV,J.D.LOVE JRNL TITL STRUCTURAL GENOMICS FOR DRUG DESIGN AGAINST THE PATHOGEN JRNL TITL 2 COXIELLA BURNETII. JRNL REF PROTEINS V. 83 2124 2015 JRNL REFN ISSN 0887-3585 JRNL PMID 26033498 JRNL DOI 10.1002/PROT.24841 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2378 - 4.7711 0.98 2685 126 0.2165 0.2669 REMARK 3 2 4.7711 - 3.7882 0.98 2525 133 0.1747 0.2114 REMARK 3 3 3.7882 - 3.3097 0.98 2473 139 0.2316 0.2567 REMARK 3 4 3.3097 - 3.0073 0.99 2496 147 0.2183 0.2736 REMARK 3 5 3.0073 - 2.7918 1.00 2483 126 0.2165 0.2981 REMARK 3 6 2.7918 - 2.6273 1.00 2488 153 0.2061 0.2888 REMARK 3 7 2.6273 - 2.4957 1.00 2478 142 0.2093 0.2862 REMARK 3 8 2.4957 - 2.3871 1.00 2481 125 0.2098 0.2616 REMARK 3 9 2.3871 - 2.3000 0.99 2461 130 0.2082 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 36.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.88410 REMARK 3 B22 (A**2) : 3.88410 REMARK 3 B33 (A**2) : -7.76830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3233 REMARK 3 ANGLE : 0.724 4354 REMARK 3 CHIRALITY : 0.054 456 REMARK 3 PLANARITY : 0.003 563 REMARK 3 DIHEDRAL : 13.309 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:103) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6022 23.2007 -21.3138 REMARK 3 T TENSOR REMARK 3 T11: 0.0499 T22: 0.1579 REMARK 3 T33: 0.0963 T12: 0.0250 REMARK 3 T13: -0.0178 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 0.2685 L22: 0.9983 REMARK 3 L33: 1.0526 L12: 0.3074 REMARK 3 L13: -0.1312 L23: 0.0129 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.0403 S13: -0.1037 REMARK 3 S21: 0.0187 S22: -0.0583 S23: -0.1246 REMARK 3 S31: 0.0575 S32: 0.1657 S33: -0.0429 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 104:176) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2317 31.1496 -6.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.2321 REMARK 3 T33: 0.1949 T12: 0.0418 REMARK 3 T13: 0.0456 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.9576 L22: 1.2317 REMARK 3 L33: 1.5315 L12: 0.7098 REMARK 3 L13: 0.2913 L23: -0.0812 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.2728 S13: 0.0302 REMARK 3 S21: 0.1785 S22: -0.1061 S23: 0.2383 REMARK 3 S31: -0.1167 S32: -0.0204 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 177:268) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5565 29.3953 -11.9982 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.1898 REMARK 3 T33: 0.1668 T12: 0.0163 REMARK 3 T13: 0.0067 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 0.3467 L22: 0.6696 REMARK 3 L33: 0.7317 L12: 0.1985 REMARK 3 L13: -0.0093 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: 0.0731 S13: 0.0393 REMARK 3 S21: 0.0433 S22: -0.0416 S23: 0.1767 REMARK 3 S31: -0.0343 S32: -0.1425 S33: -0.0280 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 269:316) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6875 23.8527 -38.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.3324 REMARK 3 T33: 0.1402 T12: 0.0291 REMARK 3 T13: -0.0458 T23: -0.1000 REMARK 3 L TENSOR REMARK 3 L11: 1.3267 L22: 0.7082 REMARK 3 L33: 0.1807 L12: 0.0918 REMARK 3 L13: 0.0844 L23: 0.1853 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.6012 S13: -0.1014 REMARK 3 S21: -0.1634 S22: 0.1728 S23: -0.0763 REMARK 3 S31: 0.0365 S32: 0.0629 S33: -0.1113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 317:404) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9726 23.7817 -42.9842 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.5278 REMARK 3 T33: 0.1367 T12: 0.0962 REMARK 3 T13: 0.0106 T23: -0.0903 REMARK 3 L TENSOR REMARK 3 L11: 0.1458 L22: 0.5551 REMARK 3 L33: 1.7122 L12: 0.2670 REMARK 3 L13: -0.3417 L23: 0.1658 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0273 S13: 0.0156 REMARK 3 S21: -0.2550 S22: 0.0067 S23: -0.0650 REMARK 3 S31: -0.0701 S32: 0.7218 S33: -0.0266 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.06900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.81600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.81600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.03450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.81600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.81600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.10350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.81600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.81600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.03450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.81600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.81600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.10350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.06900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 163 REMARK 465 LEU A 164 REMARK 465 GLN A 165 REMARK 465 ALA A 166 REMARK 465 GLY A 167 REMARK 465 ALA A 168 REMARK 465 ARG A 169 REMARK 465 VAL A 170 REMARK 465 GLU A 171 REMARK 465 VAL A 172 REMARK 465 SER A 173 REMARK 465 ASP A 174 REMARK 465 VAL A 330 REMARK 465 ASN A 331 REMARK 465 HIS A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 THR A 335 REMARK 465 GLN A 404 REMARK 465 GLY A 405 REMARK 465 ALA A 406 REMARK 465 LYS A 407 REMARK 465 LYS A 408 REMARK 465 GLU A 409 REMARK 465 ALA A 410 REMARK 465 ASP A 411 REMARK 465 VAL A 412 REMARK 465 GLN A 413 REMARK 465 GLU A 414 REMARK 465 ILE A 415 REMARK 465 LYS A 416 REMARK 465 LYS A 417 REMARK 465 LEU A 418 REMARK 465 ILE A 419 REMARK 465 ASP A 420 REMARK 465 GLN A 421 REMARK 465 ARG A 422 REMARK 465 ASN A 423 REMARK 465 GLU A 424 REMARK 465 ALA A 425 REMARK 465 ARG A 426 REMARK 465 ALA A 427 REMARK 465 LYS A 428 REMARK 465 LYS A 429 REMARK 465 ASP A 430 REMARK 465 TRP A 431 REMARK 465 LYS A 432 REMARK 465 THR A 433 REMARK 465 ALA A 434 REMARK 465 ASP A 435 REMARK 465 GLN A 436 REMARK 465 ILE A 437 REMARK 465 ARG A 438 REMARK 465 ASP A 439 REMARK 465 GLN A 440 REMARK 465 LEU A 441 REMARK 465 THR A 442 REMARK 465 ASP A 443 REMARK 465 LEU A 444 REMARK 465 GLY A 445 REMARK 465 VAL A 446 REMARK 465 ALA A 447 REMARK 465 ILE A 448 REMARK 465 GLU A 449 REMARK 465 ASP A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 ASP A 453 REMARK 465 GLY A 454 REMARK 465 THR A 455 REMARK 465 SER A 456 REMARK 465 TRP A 457 REMARK 465 ARG A 458 REMARK 465 GLN A 459 REMARK 465 GLU A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 325 -81.02 -29.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 461 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 CYS A 210 SG 127.2 REMARK 620 3 HIS A 235 NE2 108.1 110.1 REMARK 620 4 HOH A 580 O 110.8 92.3 105.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 461 DBREF 3TQO A 1 460 UNP Q83BL7 SYC_COXBU 1 460 SEQADV 3TQO ASN A -1 UNP Q83BL7 EXPRESSION TAG SEQADV 3TQO ALA A 0 UNP Q83BL7 EXPRESSION TAG SEQRES 1 A 462 ASN ALA MSE SER VAL LYS ILE PHE ASN SER LEU THR LYS SEQRES 2 A 462 GLN LYS GLU ILE PHE LYS PRO ILE GLU SER GLY LYS VAL SEQRES 3 A 462 LYS LEU TYR VAL CYS GLY MSE THR VAL TYR ASP TYR MSE SEQRES 4 A 462 HIS ILE GLY HIS GLY ARG SER TRP ILE ILE PHE ASP MSE SEQRES 5 A 462 VAL VAL ARG TYR LEU ARG MSE ARG GLY TYR GLU VAL THR SEQRES 6 A 462 PHE VAL ARG ASN ILE THR ASP ILE ASP ASP LYS ILE ILE SEQRES 7 A 462 LYS ARG ALA GLY GLU ASN LYS GLU SER PRO ALA ALA LEU SEQRES 8 A 462 ALA GLU ARG PHE ILE GLN ILE LEU HIS GLU ASP GLU LYS SEQRES 9 A 462 ALA LEU ARG VAL LEU SER PRO ASP GLN GLU PRO ARG ALA SEQRES 10 A 462 THR GLN TYR VAL PRO GLU ILE ILE LYS LEU ILE GLN LYS SEQRES 11 A 462 LEU LEU ASP ASN GLN TYR ALA TYR THR GLY GLN ASN GLY SEQRES 12 A 462 ASP VAL PHE PHE ASP VAL ARG ARG PHE LYS ASP TYR GLY SEQRES 13 A 462 LYS LEU SER HIS ARG HIS LEU ASP GLU LEU GLN ALA GLY SEQRES 14 A 462 ALA ARG VAL GLU VAL SER ASP SER LYS ARG ASP PRO LEU SEQRES 15 A 462 ASP PHE VAL LEU TRP LYS LYS ALA LYS PRO GLY GLU PRO SEQRES 16 A 462 LYS TRP ASP SER PRO TRP GLY GLU GLY ARG PRO GLY TRP SEQRES 17 A 462 HIS ILE GLU CYS SER ALA MSE SER SER SER ILE LEU GLY SEQRES 18 A 462 GLN PRO PHE ASP ILE HIS GLY GLY GLY LEU ASP LEU LYS SEQRES 19 A 462 PHE PRO HIS HIS GLU ASN GLU ILE ALA GLN SER GLU ALA SEQRES 20 A 462 GLY GLU GLU LYS PRO PHE VAL LYS LEU TRP MSE HIS ALA SEQRES 21 A 462 GLY LEU LEU GLU ILE ASN LYS GLU LYS MSE SER LYS SER SEQRES 22 A 462 LEU GLY ASN ILE ILE SER ILE ARG GLU ALA LEU LYS GLU SEQRES 23 A 462 SER ASP VAL GLU VAL LEU ARG TYR PHE LEU LEU SER GLY SEQRES 24 A 462 HIS TYR ARG ASN PRO LEU SER TYR SER LYS GLU ASN LEU SEQRES 25 A 462 GLU ASN GLY ARG LEU ALA LEU GLU ARG PHE TYR LEU ALA SEQRES 26 A 462 LEU ARG GLY LEU PRO VAL VAL ASN HIS GLU LYS THR SER SEQRES 27 A 462 SER TYR THR ASP ARG PHE TYR GLU ALA MSE ASP ASP ASP SEQRES 28 A 462 PHE ASN THR PRO ILE ALA PHE ALA LEU LEU PHE GLU MSE SEQRES 29 A 462 VAL ARG GLU ILE ASN ARG PHE ARG ASP ASN ASN GLN ILE SEQRES 30 A 462 GLU LYS ALA ALA VAL LEU ALA ALA GLU LEU LYS CYS LEU SEQRES 31 A 462 GLY ASN ILE PHE GLY LEU LEU GLN TYR SER PRO GLU GLN SEQRES 32 A 462 PHE LEU GLN GLY ALA LYS LYS GLU ALA ASP VAL GLN GLU SEQRES 33 A 462 ILE LYS LYS LEU ILE ASP GLN ARG ASN GLU ALA ARG ALA SEQRES 34 A 462 LYS LYS ASP TRP LYS THR ALA ASP GLN ILE ARG ASP GLN SEQRES 35 A 462 LEU THR ASP LEU GLY VAL ALA ILE GLU ASP SER SER ASP SEQRES 36 A 462 GLY THR SER TRP ARG GLN GLU MODRES 3TQO MSE A 1 MET SELENOMETHIONINE MODRES 3TQO MSE A 31 MET SELENOMETHIONINE MODRES 3TQO MSE A 37 MET SELENOMETHIONINE MODRES 3TQO MSE A 50 MET SELENOMETHIONINE MODRES 3TQO MSE A 57 MET SELENOMETHIONINE MODRES 3TQO MSE A 213 MET SELENOMETHIONINE MODRES 3TQO MSE A 256 MET SELENOMETHIONINE MODRES 3TQO MSE A 268 MET SELENOMETHIONINE MODRES 3TQO MSE A 346 MET SELENOMETHIONINE MODRES 3TQO MSE A 362 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 31 8 HET MSE A 37 8 HET MSE A 50 8 HET MSE A 57 8 HET MSE A 213 8 HET MSE A 256 8 HET MSE A 268 8 HET MSE A 346 8 HET MSE A 362 8 HET ZN A 461 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *150(H2 O) HELIX 1 1 HIS A 38 ARG A 58 1 21 HELIX 2 2 ASP A 72 ASN A 82 1 11 HELIX 3 3 SER A 85 ARG A 105 1 21 HELIX 4 4 ARG A 114 GLN A 117 5 4 HELIX 5 5 TYR A 118 ASN A 132 1 15 HELIX 6 6 GLY A 205 GLY A 219 1 15 HELIX 7 7 ASP A 230 LYS A 232 5 3 HELIX 8 8 PRO A 234 GLU A 248 1 15 HELIX 9 9 SER A 277 SER A 285 1 9 HELIX 10 10 ASP A 286 GLY A 297 1 12 HELIX 11 11 SER A 306 ARG A 325 1 20 HELIX 12 12 SER A 337 ASP A 347 1 11 HELIX 13 13 ASN A 351 ASN A 372 1 22 HELIX 14 14 GLN A 374 ASN A 390 1 17 HELIX 15 15 ILE A 391 GLY A 393 5 3 HELIX 16 16 SER A 398 LEU A 403 1 6 SHEET 1 A 2 LYS A 4 ASN A 7 0 SHEET 2 A 2 GLN A 12 ILE A 15 -1 O GLN A 12 N ASN A 7 SHEET 1 B 4 GLU A 61 ARG A 66 0 SHEET 2 B 4 LYS A 23 VAL A 28 1 N VAL A 24 O THR A 63 SHEET 3 B 4 PHE A 222 GLY A 228 1 O GLY A 226 N TYR A 27 SHEET 4 B 4 VAL A 252 ALA A 258 1 O MSE A 256 N HIS A 225 SHEET 1 C 4 ALA A 135 THR A 137 0 SHEET 2 C 4 VAL A 143 PHE A 145 -1 O PHE A 144 N TYR A 136 SHEET 3 C 4 PHE A 182 LYS A 187 -1 O LEU A 184 N VAL A 143 SHEET 4 C 4 GLY A 202 PRO A 204 -1 O ARG A 203 N LYS A 186 SHEET 1 D 3 GLU A 266 LYS A 267 0 SHEET 2 D 3 LEU A 261 ILE A 263 -1 N ILE A 263 O GLU A 266 SHEET 3 D 3 LEU A 303 TYR A 305 1 O LEU A 303 N GLU A 262 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C GLY A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N THR A 32 1555 1555 1.33 LINK C TYR A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N HIS A 38 1555 1555 1.33 LINK C ASP A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N VAL A 51 1555 1555 1.33 LINK C ARG A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N ARG A 58 1555 1555 1.33 LINK C ALA A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N SER A 214 1555 1555 1.33 LINK C TRP A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N HIS A 257 1555 1555 1.33 LINK C LYS A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N SER A 269 1555 1555 1.33 LINK C ALA A 345 N MSE A 346 1555 1555 1.33 LINK C MSE A 346 N ASP A 347 1555 1555 1.33 LINK C GLU A 361 N MSE A 362 1555 1555 1.33 LINK C MSE A 362 N VAL A 363 1555 1555 1.33 LINK SG CYS A 29 ZN ZN A 461 1555 1555 2.37 LINK SG CYS A 210 ZN ZN A 461 1555 1555 2.39 LINK NE2 HIS A 235 ZN ZN A 461 1555 1555 2.21 LINK ZN ZN A 461 O HOH A 580 1555 1555 2.42 CISPEP 1 THR A 137 GLY A 138 0 8.37 CISPEP 2 GLN A 220 PRO A 221 0 1.99 CISPEP 3 PHE A 233 PRO A 234 0 1.16 SITE 1 AC1 5 CYS A 29 CYS A 210 HIS A 235 GLU A 239 SITE 2 AC1 5 HOH A 580 CRYST1 97.632 97.632 108.138 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009247 0.00000