data_3TRA # _entry.id 3TRA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TRA pdb_00003tra 10.2210/pdb3tra/pdb RCSB TRNA08 ? ? WWPDB D_1000179176 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1987-11-06 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_special_symmetry 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 1989-04-19 _pdbx_database_PDB_obs_spr.pdb_id 3TRA _pdbx_database_PDB_obs_spr.replace_pdb_id 9TNA _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3TRA _pdbx_database_status.recvd_initial_deposition_date 1987-11-06 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Westhof, E.' 1 'Dumas, P.' 2 'Moras, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals.' 'Acta Crystallogr.,Sect.A' 44 112 123 1988 ACACEQ DK 0108-7673 0621 ? 3272146 10.1107/S010876738700446X 1 'Hydration of Transfer RNA Molecules. A Crystallographic Study' Biochimie 70 145 ? 1988 BICMBE FR 0300-9084 0466 ? ? ? 2 'Three-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination' 'Acta Crystallogr.,Sect.B' 42 272 ? 1986 ASBSDK DK 0108-7681 0622 ? ? ? 3 'Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP, a Model for T-RNA-M-RNA Recognition' Proc.Natl.Acad.Sci.USA 83 932 ? 1986 PNASA6 US 0027-8424 0040 ? ? ? 4 'Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA' J.Mol.Biol. 184 119 ? 1985 JMOBAK UK 0022-2836 0070 ? ? ? 5 'Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates' Biochimie 67 597 ? 1985 BICMBE FR 0300-9084 0466 ? ? ? 6 'Loop Stereochemistry and Dynamics in Transfer RNA' J.Biomol.Struct.Dyn. 1 337 ? 1983 JBSDD6 US 0739-1102 0646 ? ? ? 7 'Crystal Structure of Yeast T-RNA-ASP' Nature 288 669 ? 1980 NATUAS UK 0028-0836 0006 ? ? ? 8 'Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA' J.Mol.Biol. 115 91 ? 1977 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Westhof, E.' 1 ? primary 'Dumas, P.' 2 ? primary 'Moras, D.' 3 ? 1 'Westhof, E.' 4 ? 1 'Dumas, P.' 5 ? 1 'Moras, D.' 6 ? 2 'Comarmond, M.B.' 7 ? 2 'Giege, R.' 8 ? 2 'Thierry, J.C.' 9 ? 2 'Moras, D.' 10 ? 2 'Fischer, J.' 11 ? 3 'Moras, D.' 12 ? 3 'Dock, A.-C.' 13 ? 3 'Dumas, P.' 14 ? 3 'Westhof, E.' 15 ? 3 'Romby, P.' 16 ? 3 'Ebel, J.-P.' 17 ? 3 'Giege, R.' 18 ? 4 'Westhof, E.' 19 ? 4 'Dumas, P.' 20 ? 4 'Moras, D.' 21 ? 5 'Dumas, P.' 22 ? 5 'Ebel, J.P.' 23 ? 5 'Giege, R.' 24 ? 5 'Moras, D.' 25 ? 5 'Thierry, J.C.' 26 ? 5 'Westhof, E.' 27 ? 6 'Westhof, E.' 28 ? 6 'Dumas, P.' 29 ? 6 'Moras, D.' 30 ? 7 'Moras, D.' 31 ? 7 'Comarmond, M.B.' 32 ? 7 'Fischer, J.' 33 ? 7 'Weiss, R.' 34 ? 7 'Thierry, J.C.' 35 ? 7 'Ebel, J.P.' 36 ? 7 'Giege, R.' 37 ? 8 'Giege, R.' 38 ? 8 'Moras, D.' 39 ? 8 'Thierry, J.C.' 40 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TRNAASP 24181.369 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;UCCGUGAUAGUU(PSU)AA(H2U)GG(H2U)CAGAAUGGGCGC(PSU)UGUC(1MG)CGUGCCAGAU(5MC)GGGG (5MU)(PSU)CAAUUCCCCGUCGCGGAGCCA ; _entity_poly.pdbx_seq_one_letter_code_can UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 G n 1 5 U n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 PSU n 1 14 A n 1 15 A n 1 16 H2U n 1 17 G n 1 18 G n 1 19 H2U n 1 20 C n 1 21 A n 1 22 G n 1 23 A n 1 24 A n 1 25 U n 1 26 G n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 C n 1 32 PSU n 1 33 U n 1 34 G n 1 35 U n 1 36 C n 1 37 1MG n 1 38 C n 1 39 G n 1 40 U n 1 41 G n 1 42 C n 1 43 C n 1 44 A n 1 45 G n 1 46 A n 1 47 U n 1 48 5MC n 1 49 G n 1 50 G n 1 51 G n 1 52 G n 1 53 5MU n 1 54 PSU n 1 55 C n 1 56 A n 1 57 A n 1 58 U n 1 59 U n 1 60 C n 1 61 C n 1 62 C n 1 63 C n 1 64 G n 1 65 U n 1 66 C n 1 67 G n 1 68 C n 1 69 G n 1 70 G n 1 71 A n 1 72 G n 1 73 C n 1 74 C n 1 75 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MG 'RNA linking' n "1N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 PSU 13 13 13 PSU PSU A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 H2U 16 16 16 H2U H2U A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 H2U 19 19 19 H2U H2U A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 PSU 32 32 32 PSU PSU A . n A 1 33 U 33 33 33 U U A . n A 1 34 G 34 34 34 G G A . n A 1 35 U 35 35 35 U U A . n A 1 36 C 36 36 36 C C A . n A 1 37 1MG 37 37 37 1MG 1MG A . n A 1 38 C 38 38 38 C C A . n A 1 39 G 39 39 39 G G A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 5MC 48 48 48 5MC 5MC A . n A 1 49 G 49 49 49 G G A . n A 1 50 G 50 50 50 G G A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 5MU 53 53 53 5MU 5MU A . n A 1 54 PSU 54 54 54 PSU PSU A . n A 1 55 C 55 55 55 C C A . n A 1 56 A 56 56 56 A A A . n A 1 57 A 57 57 57 A A A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 C 63 63 63 C C A . n A 1 64 G 64 64 64 G G A . n A 1 65 U 65 65 65 U U A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 G 72 72 72 G G A . n A 1 73 C 73 73 ? ? ? A . n A 1 74 C 74 74 ? ? ? A . n A 1 75 A 75 75 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 76 76 MG MG A . C 3 HOH 1 77 77 HOH HOH A . C 3 HOH 2 78 78 HOH HOH A . C 3 HOH 3 79 79 HOH HOH A . C 3 HOH 4 80 80 HOH HOH A . C 3 HOH 5 81 81 HOH HOH A . C 3 HOH 6 82 82 HOH HOH A . C 3 HOH 7 83 83 HOH HOH A . C 3 HOH 8 84 84 HOH HOH A . C 3 HOH 9 85 85 HOH HOH A . C 3 HOH 10 86 86 HOH HOH A . C 3 HOH 11 87 87 HOH HOH A . C 3 HOH 12 88 88 HOH HOH A . C 3 HOH 13 89 89 HOH HOH A . C 3 HOH 14 90 90 HOH HOH A . C 3 HOH 15 91 91 HOH HOH A . C 3 HOH 16 92 92 HOH HOH A . C 3 HOH 17 93 93 HOH HOH A . C 3 HOH 18 94 94 HOH HOH A . C 3 HOH 19 95 95 HOH HOH A . C 3 HOH 20 96 96 HOH HOH A . C 3 HOH 21 97 97 HOH HOH A . C 3 HOH 22 98 98 HOH HOH A . C 3 HOH 23 99 99 HOH HOH A . C 3 HOH 24 100 100 HOH HOH A . C 3 HOH 25 101 101 HOH HOH A . C 3 HOH 26 102 102 HOH HOH A . C 3 HOH 27 103 103 HOH HOH A . C 3 HOH 28 104 104 HOH HOH A . C 3 HOH 29 105 105 HOH HOH A . C 3 HOH 30 106 106 HOH HOH A . C 3 HOH 31 107 107 HOH HOH A . C 3 HOH 32 108 108 HOH HOH A . C 3 HOH 33 109 109 HOH HOH A . C 3 HOH 34 110 110 HOH HOH A . C 3 HOH 35 111 111 HOH HOH A . C 3 HOH 36 112 112 HOH HOH A . C 3 HOH 37 113 113 HOH HOH A . C 3 HOH 38 114 114 HOH HOH A . C 3 HOH 39 115 115 HOH HOH A . C 3 HOH 40 116 116 HOH HOH A . C 3 HOH 41 117 117 HOH HOH A . C 3 HOH 42 118 118 HOH HOH A . C 3 HOH 43 119 119 HOH HOH A . C 3 HOH 44 120 120 HOH HOH A . C 3 HOH 45 121 121 HOH HOH A . C 3 HOH 46 122 122 HOH HOH A . C 3 HOH 47 123 123 HOH HOH A . C 3 HOH 48 124 124 HOH HOH A . C 3 HOH 49 125 125 HOH HOH A . C 3 HOH 50 126 126 HOH HOH A . C 3 HOH 51 127 127 HOH HOH A . C 3 HOH 52 128 128 HOH HOH A . C 3 HOH 53 129 129 HOH HOH A . C 3 HOH 54 130 130 HOH HOH A . C 3 HOH 55 131 131 HOH HOH A . C 3 HOH 56 132 132 HOH HOH A . C 3 HOH 57 133 133 HOH HOH A . C 3 HOH 58 134 134 HOH HOH A . C 3 HOH 59 135 135 HOH HOH A . C 3 HOH 60 136 136 HOH HOH A . C 3 HOH 61 137 137 HOH HOH A . C 3 HOH 62 138 138 HOH HOH A . C 3 HOH 63 139 139 HOH HOH A . C 3 HOH 64 140 140 HOH HOH A . C 3 HOH 65 141 141 HOH HOH A . C 3 HOH 66 142 142 HOH HOH A . C 3 HOH 67 143 143 HOH HOH A . C 3 HOH 68 144 144 HOH HOH A . C 3 HOH 69 145 145 HOH HOH A . C 3 HOH 70 146 146 HOH HOH A . C 3 HOH 71 147 147 HOH HOH A . C 3 HOH 72 148 148 HOH HOH A . C 3 HOH 73 149 149 HOH HOH A . C 3 HOH 74 150 150 HOH HOH A . C 3 HOH 75 151 151 HOH HOH A . C 3 HOH 76 152 152 HOH HOH A . C 3 HOH 77 153 153 HOH HOH A . C 3 HOH 78 154 154 HOH HOH A . C 3 HOH 79 155 155 HOH HOH A . C 3 HOH 80 156 156 HOH HOH A . C 3 HOH 81 157 157 HOH HOH A . C 3 HOH 82 158 158 HOH HOH A . C 3 HOH 83 159 159 HOH HOH A . C 3 HOH 84 160 160 HOH HOH A . C 3 HOH 85 161 161 HOH HOH A . C 3 HOH 86 162 162 HOH HOH A . C 3 HOH 87 163 163 HOH HOH A . C 3 HOH 88 164 164 HOH HOH A . C 3 HOH 89 165 165 HOH HOH A . C 3 HOH 90 166 166 HOH HOH A . C 3 HOH 91 167 167 HOH HOH A . C 3 HOH 92 168 168 HOH HOH A . C 3 HOH 93 169 169 HOH HOH A . C 3 HOH 94 170 170 HOH HOH A . C 3 HOH 95 171 171 HOH HOH A . C 3 HOH 96 172 172 HOH HOH A . C 3 HOH 97 173 173 HOH HOH A . C 3 HOH 98 174 174 HOH HOH A . C 3 HOH 99 175 175 HOH HOH A . C 3 HOH 100 176 176 HOH HOH A . C 3 HOH 101 177 177 HOH HOH A . C 3 HOH 102 178 178 HOH HOH A . C 3 HOH 103 179 179 HOH HOH A . C 3 HOH 104 180 180 HOH HOH A . C 3 HOH 105 181 181 HOH HOH A . C 3 HOH 106 182 182 HOH HOH A . C 3 HOH 107 183 183 HOH HOH A . C 3 HOH 108 184 184 HOH HOH A . C 3 HOH 109 185 185 HOH HOH A . C 3 HOH 110 186 186 HOH HOH A . C 3 HOH 111 187 187 HOH HOH A . C 3 HOH 112 188 188 HOH HOH A . C 3 HOH 113 189 189 HOH HOH A . C 3 HOH 114 190 190 HOH HOH A . C 3 HOH 115 191 191 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 3TRA _cell.length_a 60.300 _cell.length_b 68.000 _cell.length_c 149.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TRA _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 3TRA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_percent_sol 61.18 _exptl_crystal.description ? # _refine.entry_id 3TRA _refine.ls_number_reflns_obs 4585 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1880000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1540 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 1656 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 3TRA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3TRA _struct.title 'RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TRA _struct_keywords.pdbx_keywords T-RNA _struct_keywords.text 'T-RNA, SINGLE STRAND, LOOPS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 3TRA _struct_ref.pdbx_db_accession 3TRA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TRA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3TRA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 75 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 75 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 12 "O3'" ? ? ? 1_555 A PSU 13 P ? ? A U 12 A PSU 13 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? A PSU 13 "O3'" ? ? ? 1_555 A A 14 P ? ? A PSU 13 A A 14 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale both ? A A 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A A 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale4 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A G 17 P ? ? A H2U 16 A G 17 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale5 covale both ? A G 18 "O3'" ? ? ? 1_555 A H2U 19 P ? ? A G 18 A H2U 19 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale both ? A H2U 19 "O3'" ? ? ? 1_555 A C 20 P ? ? A H2U 19 A C 20 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale7 covale both ? A C 31 "O3'" ? ? ? 1_555 A PSU 32 P ? ? A C 31 A PSU 32 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale8 covale both ? A PSU 32 "O3'" ? ? ? 1_555 A U 33 P ? ? A PSU 32 A U 33 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale9 covale both ? A C 36 "O3'" ? ? ? 1_555 A 1MG 37 P ? ? A C 36 A 1MG 37 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale10 covale both ? A 1MG 37 "O3'" ? ? ? 1_555 A C 38 P ? ? A 1MG 37 A C 38 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale11 covale both ? A U 47 "O3'" ? ? ? 1_555 A 5MC 48 P ? ? A U 47 A 5MC 48 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale12 covale both ? A 5MC 48 "O3'" ? ? ? 1_555 A G 49 P ? ? A 5MC 48 A G 49 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale13 covale both ? A G 52 "O3'" ? ? ? 1_555 A 5MU 53 P ? ? A G 52 A 5MU 53 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale14 covale both ? A 5MU 53 "O3'" ? ? ? 1_555 A PSU 54 P ? ? A 5MU 53 A PSU 54 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale15 covale both ? A PSU 54 "O3'" ? ? ? 1_555 A C 55 P ? ? A PSU 54 A C 55 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 1 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 1 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 67 O6 ? ? A U 5 A G 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 67 N1 ? ? A U 5 A G 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 10 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 10 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A G 10 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 11 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 11 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A PSU 13 N3 ? ? ? 1_555 A G 22 O6 ? ? A PSU 13 A G 22 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog31 hydrog ? ? A PSU 13 O4 ? ? ? 1_555 A G 22 N1 ? ? A PSU 13 A G 22 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog32 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 21 N3 ? ? A A 14 A A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 15 A U 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog34 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 47 O2 ? ? A A 15 A U 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A PSU 54 O4 ? ? A G 17 A PSU 54 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 22 N7 ? ? ? 1_555 A A 46 N6 ? ? A G 22 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog38 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 40 O2 ? ? A G 30 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 40 N3 ? ? A G 30 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A PSU 32 O4 ? ? ? 1_555 A C 38 N4 ? ? A PSU 32 A C 38 1_555 ? ? ? ? ? ? 'PSU-C MISPAIR' ? ? ? hydrog54 hydrog ? ? A 5MC 48 N3 ? ? ? 1_555 A G 64 N1 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A 5MC 48 N4 ? ? ? 1_555 A G 64 O6 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A 5MC 48 O2 ? ? ? 1_555 A G 64 N2 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A 5MU 53 N3 ? ? ? 1_555 A A 57 N7 ? ? A 5MU 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog70 hydrog ? ? A 5MU 53 O2 ? ? ? 1_555 A A 57 N6 ? ? A 5MU 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP2 A U 1 ? ? 1_555 "C1'" A C 55 ? ? 5_545 1.69 2 1 OP2 A U 1 ? ? 1_555 O2 A C 55 ? ? 5_545 1.94 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A U 1 ? ? N3 A U 1 ? ? C4 A U 1 ? ? 121.75 127.00 -5.25 0.60 N 2 1 N3 A U 1 ? ? C4 A U 1 ? ? C5 A U 1 ? ? 119.64 114.60 5.04 0.60 N 3 1 "C3'" A U 1 ? ? "O3'" A U 1 ? ? P A C 2 ? ? 133.93 119.70 14.23 1.20 Y 4 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.21 108.50 4.71 0.70 N 5 1 N3 A C 2 ? ? C4 A C 2 ? ? C5 A C 2 ? ? 119.42 121.90 -2.48 0.40 N 6 1 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 112.95 108.50 4.45 0.70 N 7 1 C5 A G 4 ? ? C6 A G 4 ? ? N1 A G 4 ? ? 114.51 111.50 3.01 0.50 N 8 1 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.88 108.50 4.38 0.70 N 9 1 N1 A U 5 ? ? C2 A U 5 ? ? N3 A U 5 ? ? 119.76 114.90 4.86 0.60 N 10 1 C2 A U 5 ? ? N3 A U 5 ? ? C4 A U 5 ? ? 120.04 127.00 -6.96 0.60 N 11 1 N3 A U 5 ? ? C4 A U 5 ? ? C5 A U 5 ? ? 120.05 114.60 5.45 0.60 N 12 1 "C3'" A U 5 ? ? "O3'" A U 5 ? ? P A G 6 ? ? 128.10 119.70 8.40 1.20 Y 13 1 "O4'" A A 7 ? ? "C1'" A A 7 ? ? N9 A A 7 ? ? 113.29 108.50 4.79 0.70 N 14 1 N1 A A 7 ? ? C2 A A 7 ? ? N3 A A 7 ? ? 126.26 129.30 -3.04 0.50 N 15 1 C2 A U 8 ? ? N3 A U 8 ? ? C4 A U 8 ? ? 122.79 127.00 -4.21 0.60 N 16 1 N3 A U 8 ? ? C4 A U 8 ? ? C5 A U 8 ? ? 119.03 114.60 4.43 0.60 N 17 1 N1 A A 9 ? ? C2 A A 9 ? ? N3 A A 9 ? ? 125.74 129.30 -3.56 0.50 N 18 1 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 114.68 117.70 -3.02 0.50 N 19 1 "O5'" A G 10 ? ? "C5'" A G 10 ? ? "C4'" A G 10 ? ? 102.33 109.40 -7.07 0.80 N 20 1 "O5'" A U 11 ? ? "C5'" A U 11 ? ? "C4'" A U 11 ? ? 99.63 109.40 -9.77 0.80 N 21 1 N3 A U 11 ? ? C4 A U 11 ? ? C5 A U 11 ? ? 118.72 114.60 4.12 0.60 N 22 1 C2 A U 12 ? ? N3 A U 12 ? ? C4 A U 12 ? ? 122.69 127.00 -4.31 0.60 N 23 1 N3 A U 12 ? ? C4 A U 12 ? ? C5 A U 12 ? ? 119.09 114.60 4.49 0.60 N 24 1 N1 A A 14 ? ? C2 A A 14 ? ? N3 A A 14 ? ? 126.15 129.30 -3.15 0.50 N 25 1 "O5'" A G 17 ? ? "C5'" A G 17 ? ? "C4'" A G 17 ? ? 104.23 109.40 -5.17 0.80 N 26 1 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 112.74 108.50 4.24 0.70 N 27 1 C5 A G 18 ? ? C6 A G 18 ? ? N1 A G 18 ? ? 114.55 111.50 3.05 0.50 N 28 1 N3 A C 20 ? ? C4 A C 20 ? ? C5 A C 20 ? ? 119.42 121.90 -2.48 0.40 N 29 1 "O5'" A A 21 ? ? "C5'" A A 21 ? ? "C4'" A A 21 ? ? 104.45 109.40 -4.95 0.80 N 30 1 N1 A A 21 ? ? C2 A A 21 ? ? N3 A A 21 ? ? 126.20 129.30 -3.10 0.50 N 31 1 "O5'" A G 22 ? ? "C5'" A G 22 ? ? "C4'" A G 22 ? ? 103.76 109.40 -5.64 0.80 N 32 1 "O4'" A G 22 ? ? "C1'" A G 22 ? ? N9 A G 22 ? ? 112.79 108.50 4.29 0.70 N 33 1 N1 A A 23 ? ? C2 A A 23 ? ? N3 A A 23 ? ? 126.15 129.30 -3.15 0.50 N 34 1 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 114.35 117.70 -3.35 0.50 N 35 1 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 113.10 108.50 4.60 0.70 N 36 1 C6 A A 24 ? ? N1 A A 24 ? ? C2 A A 24 ? ? 123.02 118.60 4.42 0.60 N 37 1 N1 A A 24 ? ? C2 A A 24 ? ? N3 A A 24 ? ? 125.45 129.30 -3.85 0.50 N 38 1 C2 A U 25 ? ? N3 A U 25 ? ? C4 A U 25 ? ? 122.56 127.00 -4.44 0.60 N 39 1 N3 A U 25 ? ? C4 A U 25 ? ? C5 A U 25 ? ? 119.12 114.60 4.52 0.60 N 40 1 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 114.24 108.50 5.74 0.70 N 41 1 "O5'" A G 28 ? ? P A G 28 ? ? OP2 A G 28 ? ? 117.96 110.70 7.26 1.20 N 42 1 "O5'" A G 28 ? ? "C5'" A G 28 ? ? "C4'" A G 28 ? ? 102.54 109.40 -6.86 0.80 N 43 1 "O4'" A C 31 ? ? "C1'" A C 31 ? ? N1 A C 31 ? ? 113.16 108.50 4.66 0.70 N 44 1 "C3'" A PSU 32 ? ? "O3'" A PSU 32 ? ? P A U 33 ? ? 128.41 119.70 8.71 1.20 Y 45 1 C2 A U 33 ? ? N3 A U 33 ? ? C4 A U 33 ? ? 122.26 127.00 -4.74 0.60 N 46 1 N3 A U 33 ? ? C4 A U 33 ? ? C5 A U 33 ? ? 119.30 114.60 4.70 0.60 N 47 1 "O4'" A G 34 ? ? "C1'" A G 34 ? ? N9 A G 34 ? ? 114.35 108.50 5.85 0.70 N 48 1 C2 A U 35 ? ? N3 A U 35 ? ? C4 A U 35 ? ? 122.06 127.00 -4.94 0.60 N 49 1 N3 A U 35 ? ? C4 A U 35 ? ? C5 A U 35 ? ? 119.27 114.60 4.67 0.60 N 50 1 "C3'" A U 35 ? ? "O3'" A U 35 ? ? P A C 36 ? ? 127.72 119.70 8.02 1.20 Y 51 1 "O5'" A C 38 ? ? "C5'" A C 38 ? ? "C4'" A C 38 ? ? 103.28 109.40 -6.12 0.80 N 52 1 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 114.60 108.50 6.10 0.70 N 53 1 C2 A U 40 ? ? N3 A U 40 ? ? C4 A U 40 ? ? 121.73 127.00 -5.27 0.60 N 54 1 N3 A U 40 ? ? C4 A U 40 ? ? C5 A U 40 ? ? 119.59 114.60 4.99 0.60 N 55 1 "O4'" A G 41 ? ? "C1'" A G 41 ? ? N9 A G 41 ? ? 113.28 108.50 4.78 0.70 N 56 1 C5 A G 41 ? ? C6 A G 41 ? ? N1 A G 41 ? ? 114.63 111.50 3.13 0.50 N 57 1 "O5'" A C 42 ? ? "C5'" A C 42 ? ? "C4'" A C 42 ? ? 103.77 109.40 -5.63 0.80 N 58 1 "O4'" A A 44 ? ? "C1'" A A 44 ? ? N9 A A 44 ? ? 112.80 108.50 4.30 0.70 N 59 1 "O4'" A G 45 ? ? "C1'" A G 45 ? ? N9 A G 45 ? ? 115.97 108.50 7.47 0.70 N 60 1 C5 A G 45 ? ? C6 A G 45 ? ? N1 A G 45 ? ? 114.73 111.50 3.23 0.50 N 61 1 OP1 A U 47 ? ? P A U 47 ? ? OP2 A U 47 ? ? 110.29 119.60 -9.31 1.50 N 62 1 C2 A U 47 ? ? N3 A U 47 ? ? C4 A U 47 ? ? 121.65 127.00 -5.35 0.60 N 63 1 N3 A U 47 ? ? C4 A U 47 ? ? C5 A U 47 ? ? 119.57 114.60 4.97 0.60 N 64 1 "O5'" A G 49 ? ? "C5'" A G 49 ? ? "C4'" A G 49 ? ? 102.79 109.40 -6.61 0.80 N 65 1 "C3'" A PSU 54 ? ? "O3'" A PSU 54 ? ? P A C 55 ? ? 112.50 119.70 -7.20 1.20 Y 66 1 "O4'" A C 55 ? ? "C1'" A C 55 ? ? N1 A C 55 ? ? 114.82 108.50 6.32 0.70 N 67 1 "C3'" A A 56 ? ? "O3'" A A 56 ? ? P A A 57 ? ? 128.45 119.70 8.75 1.20 Y 68 1 N1 A A 57 ? ? C2 A A 57 ? ? N3 A A 57 ? ? 125.81 129.30 -3.49 0.50 N 69 1 C2 A U 58 ? ? N3 A U 58 ? ? C4 A U 58 ? ? 121.89 127.00 -5.11 0.60 N 70 1 N3 A U 58 ? ? C4 A U 58 ? ? C5 A U 58 ? ? 119.49 114.60 4.89 0.60 N 71 1 C2 A U 59 ? ? N3 A U 59 ? ? C4 A U 59 ? ? 122.15 127.00 -4.85 0.60 N 72 1 N3 A U 59 ? ? C4 A U 59 ? ? C5 A U 59 ? ? 119.07 114.60 4.47 0.60 N 73 1 "C3'" A U 59 ? ? "O3'" A U 59 ? ? P A C 60 ? ? 111.85 119.70 -7.85 1.20 Y 74 1 "O5'" A C 60 ? ? "C5'" A C 60 ? ? "C4'" A C 60 ? ? 104.23 109.40 -5.17 0.80 N 75 1 N1 A C 61 ? ? "C1'" A C 61 ? ? "C2'" A C 61 ? ? 104.15 112.00 -7.85 1.10 N 76 1 "O4'" A C 61 ? ? "C1'" A C 61 ? ? N1 A C 61 ? ? 114.45 108.50 5.95 0.70 N 77 1 "O5'" A C 63 ? ? "C5'" A C 63 ? ? "C4'" A C 63 ? ? 104.59 109.40 -4.81 0.80 N 78 1 "O4'" A C 63 ? ? "C1'" A C 63 ? ? N1 A C 63 ? ? 114.22 108.50 5.72 0.70 N 79 1 "C3'" A C 63 ? ? "O3'" A C 63 ? ? P A G 64 ? ? 112.17 119.70 -7.53 1.20 Y 80 1 OP1 A U 65 ? ? P A U 65 ? ? OP2 A U 65 ? ? 110.27 119.60 -9.33 1.50 N 81 1 "O5'" A U 65 ? ? "C5'" A U 65 ? ? "C4'" A U 65 ? ? 103.09 109.40 -6.31 0.80 N 82 1 C2 A U 65 ? ? N3 A U 65 ? ? C4 A U 65 ? ? 122.88 127.00 -4.12 0.60 N 83 1 N3 A U 65 ? ? C4 A U 65 ? ? C5 A U 65 ? ? 119.40 114.60 4.80 0.60 N 84 1 "O5'" A C 66 ? ? "C5'" A C 66 ? ? "C4'" A C 66 ? ? 103.87 109.40 -5.53 0.80 N 85 1 "O4'" A C 68 ? ? "C1'" A C 68 ? ? N1 A C 68 ? ? 113.23 108.50 4.73 0.70 N 86 1 C5 A G 69 ? ? C6 A G 69 ? ? N1 A G 69 ? ? 114.63 111.50 3.13 0.50 N 87 1 N1 A A 71 ? ? C2 A A 71 ? ? N3 A A 71 ? ? 125.81 129.30 -3.49 0.50 N 88 1 "O4'" A G 72 ? ? "C1'" A G 72 ? ? N9 A G 72 ? ? 112.93 108.50 4.43 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A PSU 13 A PSU 13 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 2 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 19 A H2U 19 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A PSU 32 A PSU 32 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 5 A 1MG 37 A 1MG 37 ? G "1N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 6 A 5MC 48 A 5MC 48 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 7 A 5MU 53 A 5MU 53 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 8 A PSU 54 A PSU 54 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 97 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 73 ? A C 73 2 1 Y 1 A C 74 ? A C 74 3 1 Y 1 A A 75 ? A A 75 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MG P P N N 1 1MG OP1 O N N 2 1MG OP2 O N N 3 1MG OP3 O N N 4 1MG "O5'" O N N 5 1MG "C5'" C N N 6 1MG "C4'" C N R 7 1MG "O4'" O N N 8 1MG "C3'" C N S 9 1MG "O3'" O N N 10 1MG "C2'" C N R 11 1MG "O2'" O N N 12 1MG "C1'" C N R 13 1MG N9 N Y N 14 1MG C8 C Y N 15 1MG N7 N Y N 16 1MG C5 C Y N 17 1MG C6 C N N 18 1MG O6 O N N 19 1MG N1 N N N 20 1MG CM1 C N N 21 1MG C2 C N N 22 1MG N2 N N N 23 1MG N3 N N N 24 1MG C4 C Y N 25 1MG HOP2 H N N 26 1MG HOP3 H N N 27 1MG "H5'" H N N 28 1MG "H5''" H N N 29 1MG "H4'" H N N 30 1MG "H3'" H N N 31 1MG "HO3'" H N N 32 1MG "H2'" H N N 33 1MG "HO2'" H N N 34 1MG "H1'" H N N 35 1MG H8 H N N 36 1MG HM11 H N N 37 1MG HM12 H N N 38 1MG HM13 H N N 39 1MG HN21 H N N 40 1MG HN22 H N N 41 5MC P P N N 42 5MC OP1 O N N 43 5MC OP2 O N N 44 5MC OP3 O N N 45 5MC "O5'" O N N 46 5MC "C5'" C N N 47 5MC "C4'" C N R 48 5MC "O4'" O N N 49 5MC "C3'" C N S 50 5MC "O3'" O N N 51 5MC "C2'" C N R 52 5MC "O2'" O N N 53 5MC "C1'" C N R 54 5MC N1 N N N 55 5MC C2 C N N 56 5MC O2 O N N 57 5MC N3 N N N 58 5MC C4 C N N 59 5MC N4 N N N 60 5MC C5 C N N 61 5MC C6 C N N 62 5MC CM5 C N N 63 5MC HOP2 H N N 64 5MC HOP3 H N N 65 5MC "H5'" H N N 66 5MC "H5''" H N N 67 5MC "H4'" H N N 68 5MC "H3'" H N N 69 5MC "HO3'" H N N 70 5MC "H2'" H N N 71 5MC "HO2'" H N N 72 5MC "H1'" H N N 73 5MC HN41 H N N 74 5MC HN42 H N N 75 5MC H6 H N N 76 5MC HM51 H N N 77 5MC HM52 H N N 78 5MC HM53 H N N 79 5MU N1 N N N 80 5MU C2 C N N 81 5MU N3 N N N 82 5MU C4 C N N 83 5MU C5 C N N 84 5MU C5M C N N 85 5MU C6 C N N 86 5MU O2 O N N 87 5MU O4 O N N 88 5MU "C1'" C N R 89 5MU "C2'" C N R 90 5MU "O2'" O N N 91 5MU "C3'" C N S 92 5MU "C4'" C N R 93 5MU "O3'" O N N 94 5MU "O4'" O N N 95 5MU "C5'" C N N 96 5MU "O5'" O N N 97 5MU P P N N 98 5MU OP1 O N N 99 5MU OP2 O N N 100 5MU OP3 O N N 101 5MU HN3 H N N 102 5MU H71 H N N 103 5MU H72 H N N 104 5MU H73 H N N 105 5MU H6 H N N 106 5MU "H1'" H N N 107 5MU "H2'" H N N 108 5MU "HO2'" H N N 109 5MU "H3'" H N N 110 5MU "H4'" H N N 111 5MU "HO3'" H N N 112 5MU "H5'" H N N 113 5MU "H5''" H N N 114 5MU HOP2 H N N 115 5MU HOP3 H N N 116 A OP3 O N N 117 A P P N N 118 A OP1 O N N 119 A OP2 O N N 120 A "O5'" O N N 121 A "C5'" C N N 122 A "C4'" C N R 123 A "O4'" O N N 124 A "C3'" C N S 125 A "O3'" O N N 126 A "C2'" C N R 127 A "O2'" O N N 128 A "C1'" C N R 129 A N9 N Y N 130 A C8 C Y N 131 A N7 N Y N 132 A C5 C Y N 133 A C6 C Y N 134 A N6 N N N 135 A N1 N Y N 136 A C2 C Y N 137 A N3 N Y N 138 A C4 C Y N 139 A HOP3 H N N 140 A HOP2 H N N 141 A "H5'" H N N 142 A "H5''" H N N 143 A "H4'" H N N 144 A "H3'" H N N 145 A "HO3'" H N N 146 A "H2'" H N N 147 A "HO2'" H N N 148 A "H1'" H N N 149 A H8 H N N 150 A H61 H N N 151 A H62 H N N 152 A H2 H N N 153 C OP3 O N N 154 C P P N N 155 C OP1 O N N 156 C OP2 O N N 157 C "O5'" O N N 158 C "C5'" C N N 159 C "C4'" C N R 160 C "O4'" O N N 161 C "C3'" C N S 162 C "O3'" O N N 163 C "C2'" C N R 164 C "O2'" O N N 165 C "C1'" C N R 166 C N1 N N N 167 C C2 C N N 168 C O2 O N N 169 C N3 N N N 170 C C4 C N N 171 C N4 N N N 172 C C5 C N N 173 C C6 C N N 174 C HOP3 H N N 175 C HOP2 H N N 176 C "H5'" H N N 177 C "H5''" H N N 178 C "H4'" H N N 179 C "H3'" H N N 180 C "HO3'" H N N 181 C "H2'" H N N 182 C "HO2'" H N N 183 C "H1'" H N N 184 C H41 H N N 185 C H42 H N N 186 C H5 H N N 187 C H6 H N N 188 G OP3 O N N 189 G P P N N 190 G OP1 O N N 191 G OP2 O N N 192 G "O5'" O N N 193 G "C5'" C N N 194 G "C4'" C N R 195 G "O4'" O N N 196 G "C3'" C N S 197 G "O3'" O N N 198 G "C2'" C N R 199 G "O2'" O N N 200 G "C1'" C N R 201 G N9 N Y N 202 G C8 C Y N 203 G N7 N Y N 204 G C5 C Y N 205 G C6 C N N 206 G O6 O N N 207 G N1 N N N 208 G C2 C N N 209 G N2 N N N 210 G N3 N N N 211 G C4 C Y N 212 G HOP3 H N N 213 G HOP2 H N N 214 G "H5'" H N N 215 G "H5''" H N N 216 G "H4'" H N N 217 G "H3'" H N N 218 G "HO3'" H N N 219 G "H2'" H N N 220 G "HO2'" H N N 221 G "H1'" H N N 222 G H8 H N N 223 G H1 H N N 224 G H21 H N N 225 G H22 H N N 226 H2U P P N N 227 H2U OP1 O N N 228 H2U OP2 O N N 229 H2U OP3 O N N 230 H2U "O5'" O N N 231 H2U "C5'" C N N 232 H2U "C4'" C N R 233 H2U "O4'" O N N 234 H2U "C3'" C N S 235 H2U "O3'" O N N 236 H2U "C1'" C N R 237 H2U "C2'" C N R 238 H2U "O2'" O N N 239 H2U N1 N N N 240 H2U C2 C N N 241 H2U O2 O N N 242 H2U N3 N N N 243 H2U C4 C N N 244 H2U O4 O N N 245 H2U C5 C N N 246 H2U C6 C N N 247 H2U HOP2 H N N 248 H2U HOP3 H N N 249 H2U "H5'" H N N 250 H2U "H5''" H N N 251 H2U "H4'" H N N 252 H2U "H3'" H N N 253 H2U "HO3'" H N N 254 H2U "H1'" H N N 255 H2U "H2'" H N N 256 H2U "HO2'" H N N 257 H2U HN3 H N N 258 H2U H51 H N N 259 H2U H52 H N N 260 H2U H61 H N N 261 H2U H62 H N N 262 HOH O O N N 263 HOH H1 H N N 264 HOH H2 H N N 265 MG MG MG N N 266 PSU N1 N N N 267 PSU C2 C N N 268 PSU N3 N N N 269 PSU C4 C N N 270 PSU C5 C N N 271 PSU C6 C N N 272 PSU O2 O N N 273 PSU O4 O N N 274 PSU "C1'" C N S 275 PSU "C2'" C N R 276 PSU "O2'" O N N 277 PSU "C3'" C N S 278 PSU "C4'" C N R 279 PSU "O3'" O N N 280 PSU "O4'" O N N 281 PSU "C5'" C N N 282 PSU "O5'" O N N 283 PSU P P N N 284 PSU OP1 O N N 285 PSU OP2 O N N 286 PSU OP3 O N N 287 PSU HN1 H N N 288 PSU HN3 H N N 289 PSU H6 H N N 290 PSU "H1'" H N N 291 PSU "H2'" H N N 292 PSU "HO2'" H N N 293 PSU "H3'" H N N 294 PSU "H4'" H N N 295 PSU "HO3'" H N N 296 PSU "H5'" H N N 297 PSU "H5''" H N N 298 PSU HOP2 H N N 299 PSU HOP3 H N N 300 U OP3 O N N 301 U P P N N 302 U OP1 O N N 303 U OP2 O N N 304 U "O5'" O N N 305 U "C5'" C N N 306 U "C4'" C N R 307 U "O4'" O N N 308 U "C3'" C N S 309 U "O3'" O N N 310 U "C2'" C N R 311 U "O2'" O N N 312 U "C1'" C N R 313 U N1 N N N 314 U C2 C N N 315 U O2 O N N 316 U N3 N N N 317 U C4 C N N 318 U O4 O N N 319 U C5 C N N 320 U C6 C N N 321 U HOP3 H N N 322 U HOP2 H N N 323 U "H5'" H N N 324 U "H5''" H N N 325 U "H4'" H N N 326 U "H3'" H N N 327 U "HO3'" H N N 328 U "H2'" H N N 329 U "HO2'" H N N 330 U "H1'" H N N 331 U H3 H N N 332 U H5 H N N 333 U H6 H N N 334 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MG P OP1 doub N N 1 1MG P OP2 sing N N 2 1MG P OP3 sing N N 3 1MG P "O5'" sing N N 4 1MG OP2 HOP2 sing N N 5 1MG OP3 HOP3 sing N N 6 1MG "O5'" "C5'" sing N N 7 1MG "C5'" "C4'" sing N N 8 1MG "C5'" "H5'" sing N N 9 1MG "C5'" "H5''" sing N N 10 1MG "C4'" "O4'" sing N N 11 1MG "C4'" "C3'" sing N N 12 1MG "C4'" "H4'" sing N N 13 1MG "O4'" "C1'" sing N N 14 1MG "C3'" "O3'" sing N N 15 1MG "C3'" "C2'" sing N N 16 1MG "C3'" "H3'" sing N N 17 1MG "O3'" "HO3'" sing N N 18 1MG "C2'" "O2'" sing N N 19 1MG "C2'" "C1'" sing N N 20 1MG "C2'" "H2'" sing N N 21 1MG "O2'" "HO2'" sing N N 22 1MG "C1'" N9 sing N N 23 1MG "C1'" "H1'" sing N N 24 1MG N9 C8 sing Y N 25 1MG N9 C4 sing Y N 26 1MG C8 N7 doub Y N 27 1MG C8 H8 sing N N 28 1MG N7 C5 sing Y N 29 1MG C5 C6 sing N N 30 1MG C5 C4 doub Y N 31 1MG C6 O6 doub N N 32 1MG C6 N1 sing N N 33 1MG N1 CM1 sing N N 34 1MG N1 C2 sing N N 35 1MG CM1 HM11 sing N N 36 1MG CM1 HM12 sing N N 37 1MG CM1 HM13 sing N N 38 1MG C2 N2 sing N N 39 1MG C2 N3 doub N N 40 1MG N2 HN21 sing N N 41 1MG N2 HN22 sing N N 42 1MG N3 C4 sing N N 43 5MC P OP1 doub N N 44 5MC P OP2 sing N N 45 5MC P OP3 sing N N 46 5MC P "O5'" sing N N 47 5MC OP2 HOP2 sing N N 48 5MC OP3 HOP3 sing N N 49 5MC "O5'" "C5'" sing N N 50 5MC "C5'" "C4'" sing N N 51 5MC "C5'" "H5'" sing N N 52 5MC "C5'" "H5''" sing N N 53 5MC "C4'" "O4'" sing N N 54 5MC "C4'" "C3'" sing N N 55 5MC "C4'" "H4'" sing N N 56 5MC "O4'" "C1'" sing N N 57 5MC "C3'" "O3'" sing N N 58 5MC "C3'" "C2'" sing N N 59 5MC "C3'" "H3'" sing N N 60 5MC "O3'" "HO3'" sing N N 61 5MC "C2'" "O2'" sing N N 62 5MC "C2'" "C1'" sing N N 63 5MC "C2'" "H2'" sing N N 64 5MC "O2'" "HO2'" sing N N 65 5MC "C1'" N1 sing N N 66 5MC "C1'" "H1'" sing N N 67 5MC N1 C2 sing N N 68 5MC N1 C6 sing N N 69 5MC C2 O2 doub N N 70 5MC C2 N3 sing N N 71 5MC N3 C4 doub N N 72 5MC C4 N4 sing N N 73 5MC C4 C5 sing N N 74 5MC N4 HN41 sing N N 75 5MC N4 HN42 sing N N 76 5MC C5 C6 doub N N 77 5MC C5 CM5 sing N N 78 5MC C6 H6 sing N N 79 5MC CM5 HM51 sing N N 80 5MC CM5 HM52 sing N N 81 5MC CM5 HM53 sing N N 82 5MU N1 C2 sing N N 83 5MU N1 C6 sing N N 84 5MU N1 "C1'" sing N N 85 5MU C2 N3 sing N N 86 5MU C2 O2 doub N N 87 5MU N3 C4 sing N N 88 5MU N3 HN3 sing N N 89 5MU C4 C5 sing N N 90 5MU C4 O4 doub N N 91 5MU C5 C5M sing N N 92 5MU C5 C6 doub N N 93 5MU C5M H71 sing N N 94 5MU C5M H72 sing N N 95 5MU C5M H73 sing N N 96 5MU C6 H6 sing N N 97 5MU "C1'" "C2'" sing N N 98 5MU "C1'" "O4'" sing N N 99 5MU "C1'" "H1'" sing N N 100 5MU "C2'" "O2'" sing N N 101 5MU "C2'" "C3'" sing N N 102 5MU "C2'" "H2'" sing N N 103 5MU "O2'" "HO2'" sing N N 104 5MU "C3'" "C4'" sing N N 105 5MU "C3'" "O3'" sing N N 106 5MU "C3'" "H3'" sing N N 107 5MU "C4'" "O4'" sing N N 108 5MU "C4'" "C5'" sing N N 109 5MU "C4'" "H4'" sing N N 110 5MU "O3'" "HO3'" sing N N 111 5MU "C5'" "O5'" sing N N 112 5MU "C5'" "H5'" sing N N 113 5MU "C5'" "H5''" sing N N 114 5MU "O5'" P sing N N 115 5MU P OP1 doub N N 116 5MU P OP2 sing N N 117 5MU P OP3 sing N N 118 5MU OP2 HOP2 sing N N 119 5MU OP3 HOP3 sing N N 120 A OP3 P sing N N 121 A OP3 HOP3 sing N N 122 A P OP1 doub N N 123 A P OP2 sing N N 124 A P "O5'" sing N N 125 A OP2 HOP2 sing N N 126 A "O5'" "C5'" sing N N 127 A "C5'" "C4'" sing N N 128 A "C5'" "H5'" sing N N 129 A "C5'" "H5''" sing N N 130 A "C4'" "O4'" sing N N 131 A "C4'" "C3'" sing N N 132 A "C4'" "H4'" sing N N 133 A "O4'" "C1'" sing N N 134 A "C3'" "O3'" sing N N 135 A "C3'" "C2'" sing N N 136 A "C3'" "H3'" sing N N 137 A "O3'" "HO3'" sing N N 138 A "C2'" "O2'" sing N N 139 A "C2'" "C1'" sing N N 140 A "C2'" "H2'" sing N N 141 A "O2'" "HO2'" sing N N 142 A "C1'" N9 sing N N 143 A "C1'" "H1'" sing N N 144 A N9 C8 sing Y N 145 A N9 C4 sing Y N 146 A C8 N7 doub Y N 147 A C8 H8 sing N N 148 A N7 C5 sing Y N 149 A C5 C6 sing Y N 150 A C5 C4 doub Y N 151 A C6 N6 sing N N 152 A C6 N1 doub Y N 153 A N6 H61 sing N N 154 A N6 H62 sing N N 155 A N1 C2 sing Y N 156 A C2 N3 doub Y N 157 A C2 H2 sing N N 158 A N3 C4 sing Y N 159 C OP3 P sing N N 160 C OP3 HOP3 sing N N 161 C P OP1 doub N N 162 C P OP2 sing N N 163 C P "O5'" sing N N 164 C OP2 HOP2 sing N N 165 C "O5'" "C5'" sing N N 166 C "C5'" "C4'" sing N N 167 C "C5'" "H5'" sing N N 168 C "C5'" "H5''" sing N N 169 C "C4'" "O4'" sing N N 170 C "C4'" "C3'" sing N N 171 C "C4'" "H4'" sing N N 172 C "O4'" "C1'" sing N N 173 C "C3'" "O3'" sing N N 174 C "C3'" "C2'" sing N N 175 C "C3'" "H3'" sing N N 176 C "O3'" "HO3'" sing N N 177 C "C2'" "O2'" sing N N 178 C "C2'" "C1'" sing N N 179 C "C2'" "H2'" sing N N 180 C "O2'" "HO2'" sing N N 181 C "C1'" N1 sing N N 182 C "C1'" "H1'" sing N N 183 C N1 C2 sing N N 184 C N1 C6 sing N N 185 C C2 O2 doub N N 186 C C2 N3 sing N N 187 C N3 C4 doub N N 188 C C4 N4 sing N N 189 C C4 C5 sing N N 190 C N4 H41 sing N N 191 C N4 H42 sing N N 192 C C5 C6 doub N N 193 C C5 H5 sing N N 194 C C6 H6 sing N N 195 G OP3 P sing N N 196 G OP3 HOP3 sing N N 197 G P OP1 doub N N 198 G P OP2 sing N N 199 G P "O5'" sing N N 200 G OP2 HOP2 sing N N 201 G "O5'" "C5'" sing N N 202 G "C5'" "C4'" sing N N 203 G "C5'" "H5'" sing N N 204 G "C5'" "H5''" sing N N 205 G "C4'" "O4'" sing N N 206 G "C4'" "C3'" sing N N 207 G "C4'" "H4'" sing N N 208 G "O4'" "C1'" sing N N 209 G "C3'" "O3'" sing N N 210 G "C3'" "C2'" sing N N 211 G "C3'" "H3'" sing N N 212 G "O3'" "HO3'" sing N N 213 G "C2'" "O2'" sing N N 214 G "C2'" "C1'" sing N N 215 G "C2'" "H2'" sing N N 216 G "O2'" "HO2'" sing N N 217 G "C1'" N9 sing N N 218 G "C1'" "H1'" sing N N 219 G N9 C8 sing Y N 220 G N9 C4 sing Y N 221 G C8 N7 doub Y N 222 G C8 H8 sing N N 223 G N7 C5 sing Y N 224 G C5 C6 sing N N 225 G C5 C4 doub Y N 226 G C6 O6 doub N N 227 G C6 N1 sing N N 228 G N1 C2 sing N N 229 G N1 H1 sing N N 230 G C2 N2 sing N N 231 G C2 N3 doub N N 232 G N2 H21 sing N N 233 G N2 H22 sing N N 234 G N3 C4 sing N N 235 H2U P OP1 doub N N 236 H2U P OP2 sing N N 237 H2U P OP3 sing N N 238 H2U P "O5'" sing N N 239 H2U OP2 HOP2 sing N N 240 H2U OP3 HOP3 sing N N 241 H2U "O5'" "C5'" sing N N 242 H2U "C5'" "C4'" sing N N 243 H2U "C5'" "H5'" sing N N 244 H2U "C5'" "H5''" sing N N 245 H2U "C4'" "O4'" sing N N 246 H2U "C4'" "C3'" sing N N 247 H2U "C4'" "H4'" sing N N 248 H2U "O4'" "C1'" sing N N 249 H2U "C3'" "O3'" sing N N 250 H2U "C3'" "C2'" sing N N 251 H2U "C3'" "H3'" sing N N 252 H2U "O3'" "HO3'" sing N N 253 H2U "C1'" "C2'" sing N N 254 H2U "C1'" N1 sing N N 255 H2U "C1'" "H1'" sing N N 256 H2U "C2'" "O2'" sing N N 257 H2U "C2'" "H2'" sing N N 258 H2U "O2'" "HO2'" sing N N 259 H2U N1 C2 sing N N 260 H2U N1 C6 sing N N 261 H2U C2 O2 doub N N 262 H2U C2 N3 sing N N 263 H2U N3 C4 sing N N 264 H2U N3 HN3 sing N N 265 H2U C4 O4 doub N N 266 H2U C4 C5 sing N N 267 H2U C5 C6 sing N N 268 H2U C5 H51 sing N N 269 H2U C5 H52 sing N N 270 H2U C6 H61 sing N N 271 H2U C6 H62 sing N N 272 HOH O H1 sing N N 273 HOH O H2 sing N N 274 PSU N1 C2 sing N N 275 PSU N1 C6 sing N N 276 PSU N1 HN1 sing N N 277 PSU C2 N3 sing N N 278 PSU C2 O2 doub N N 279 PSU N3 C4 sing N N 280 PSU N3 HN3 sing N N 281 PSU C4 C5 sing N N 282 PSU C4 O4 doub N N 283 PSU C5 C6 doub N N 284 PSU C5 "C1'" sing N N 285 PSU C6 H6 sing N N 286 PSU "C1'" "C2'" sing N N 287 PSU "C1'" "O4'" sing N N 288 PSU "C1'" "H1'" sing N N 289 PSU "C2'" "O2'" sing N N 290 PSU "C2'" "C3'" sing N N 291 PSU "C2'" "H2'" sing N N 292 PSU "O2'" "HO2'" sing N N 293 PSU "C3'" "C4'" sing N N 294 PSU "C3'" "O3'" sing N N 295 PSU "C3'" "H3'" sing N N 296 PSU "C4'" "O4'" sing N N 297 PSU "C4'" "C5'" sing N N 298 PSU "C4'" "H4'" sing N N 299 PSU "O3'" "HO3'" sing N N 300 PSU "C5'" "O5'" sing N N 301 PSU "C5'" "H5'" sing N N 302 PSU "C5'" "H5''" sing N N 303 PSU "O5'" P sing N N 304 PSU P OP1 doub N N 305 PSU P OP2 sing N N 306 PSU P OP3 sing N N 307 PSU OP2 HOP2 sing N N 308 PSU OP3 HOP3 sing N N 309 U OP3 P sing N N 310 U OP3 HOP3 sing N N 311 U P OP1 doub N N 312 U P OP2 sing N N 313 U P "O5'" sing N N 314 U OP2 HOP2 sing N N 315 U "O5'" "C5'" sing N N 316 U "C5'" "C4'" sing N N 317 U "C5'" "H5'" sing N N 318 U "C5'" "H5''" sing N N 319 U "C4'" "O4'" sing N N 320 U "C4'" "C3'" sing N N 321 U "C4'" "H4'" sing N N 322 U "O4'" "C1'" sing N N 323 U "C3'" "O3'" sing N N 324 U "C3'" "C2'" sing N N 325 U "C3'" "H3'" sing N N 326 U "O3'" "HO3'" sing N N 327 U "C2'" "O2'" sing N N 328 U "C2'" "C1'" sing N N 329 U "C2'" "H2'" sing N N 330 U "O2'" "HO2'" sing N N 331 U "C1'" N1 sing N N 332 U "C1'" "H1'" sing N N 333 U N1 C2 sing N N 334 U N1 C6 sing N N 335 U C2 O2 doub N N 336 U C2 N3 sing N N 337 U N3 C4 sing N N 338 U N3 H3 sing N N 339 U C4 O4 doub N N 340 U C4 C5 sing N N 341 U C5 C6 doub N N 342 U C5 H5 sing N N 343 U C6 H6 sing N N 344 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3TRA 'double helix' 3TRA 'a-form double helix' 3TRA 'hairpin loop' 3TRA 'mismatched base pair' 3TRA 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 A A 71 1_555 -0.015 -0.017 -1.104 27.501 -5.966 -4.068 1 A_U1:A71_A A 1 ? A 71 ? 20 1 1 A C 2 1_555 A G 70 1_555 0.117 -0.103 0.208 4.320 -1.890 -1.714 2 A_C2:G70_A A 2 ? A 70 ? 19 1 1 A C 3 1_555 A G 69 1_555 -0.523 -0.074 -0.100 -0.750 10.579 -1.499 3 A_C3:G69_A A 3 ? A 69 ? 19 1 1 A G 4 1_555 A C 68 1_555 -1.094 -0.511 0.364 -0.740 -11.359 -3.744 4 A_G4:C68_A A 4 ? A 68 ? 19 1 1 A U 5 1_555 A G 67 1_555 1.926 -0.349 -0.539 1.384 4.239 1.848 5 A_U5:G67_A A 5 ? A 67 ? 28 1 1 A G 6 1_555 A C 66 1_555 -1.025 -0.534 0.470 -5.731 -14.955 -4.435 6 A_G6:C66_A A 6 ? A 66 ? 19 1 1 A A 7 1_555 A U 65 1_555 -0.082 -0.099 0.341 -2.068 -3.322 -2.528 7 A_A7:U65_A A 7 ? A 65 ? 20 1 1 A 5MC 48 1_555 A G 64 1_555 -0.454 -0.088 -0.277 2.965 -6.167 -0.300 8 A_5MC48:G64_A A 48 ? A 64 ? 19 1 1 A G 49 1_555 A C 63 1_555 -1.301 -0.584 0.119 9.688 -4.702 -0.924 9 A_G49:C63_A A 49 ? A 63 ? 19 1 1 A G 50 1_555 A C 62 1_555 -1.140 -0.478 -0.101 9.008 -3.176 -2.003 10 A_G50:C62_A A 50 ? A 62 ? 19 1 1 A G 51 1_555 A C 61 1_555 1.296 -0.270 -0.240 3.780 -10.465 0.508 11 A_G51:C61_A A 51 ? A 61 ? 19 1 1 A G 52 1_555 A C 60 1_555 0.097 -0.101 0.021 -6.599 3.035 -2.043 12 A_G52:C60_A A 52 ? A 60 ? 19 1 1 A 5MU 53 1_555 A A 57 1_555 3.983 -1.865 0.060 7.741 0.928 -95.914 13 A_5MU53:A57_A A 53 ? A 57 ? 24 4 1 A PSU 54 1_555 A G 17 1_555 -0.380 -6.763 0.618 32.263 0.385 -114.405 14 A_PSU54:G17_A A 54 ? A 17 ? ? ? 1 A C 38 1_555 A PSU 32 1_555 -6.138 -2.230 -0.770 5.651 13.056 -7.578 15 A_C38:PSU32_A A 38 ? A 32 ? ? ? 1 A G 39 1_555 A C 31 1_555 -0.214 -0.174 0.509 1.672 -9.134 -2.774 16 A_G39:C31_A A 39 ? A 31 ? 19 1 1 A U 40 1_555 A G 30 1_555 2.062 -0.384 0.146 -8.468 -13.647 -1.042 17 A_U40:G30_A A 40 ? A 30 ? 28 ? 1 A G 41 1_555 A C 29 1_555 -0.669 -0.279 0.423 3.239 -9.190 -2.466 18 A_G41:C29_A A 41 ? A 29 ? 19 1 1 A C 42 1_555 A G 28 1_555 0.319 -0.180 0.009 4.784 -14.222 -1.548 19 A_C42:G28_A A 42 ? A 28 ? 19 1 1 A C 43 1_555 A G 27 1_555 -0.042 -0.125 0.241 -0.294 -14.148 -2.319 20 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A A 44 1_555 A G 26 1_555 -0.087 1.316 -0.404 -17.894 -20.484 -18.534 21 A_A44:G26_A A 44 ? A 26 ? 8 ? 1 A G 10 1_555 A U 25 1_555 -2.006 -0.416 0.097 3.311 0.657 -2.039 22 A_G10:U25_A A 10 ? A 25 ? 28 1 1 A U 11 1_555 A A 24 1_555 0.084 -0.170 0.387 1.005 -14.502 -0.679 23 A_U11:A24_A A 11 ? A 24 ? 20 1 1 A U 12 1_555 A A 23 1_555 0.177 -0.114 0.014 -2.946 -1.602 -2.068 24 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A PSU 13 1_555 A G 22 1_555 1.813 -0.388 0.468 1.826 -7.216 -1.943 25 A_PSU13:G22_A A 13 ? A 22 ? 27 1 1 A A 14 1_555 A A 21 1_555 -5.838 -0.571 0.068 -4.252 -15.052 46.543 26 A_A14:A21_A A 14 ? A 21 ? ? ? 1 A A 15 1_555 A U 47 1_555 0.100 1.072 -0.445 1.049 3.654 164.330 27 A_A15:U47_A A 15 ? A 47 ? 21 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 A A 71 1_555 A C 2 1_555 A G 70 1_555 0.566 -1.454 3.895 -7.612 7.932 35.402 -3.493 -2.045 3.316 12.672 12.160 37.018 1 AA_U1C2:G70A71_AA A 1 ? A 71 ? A 2 ? A 70 ? 1 A C 2 1_555 A G 70 1_555 A C 3 1_555 A G 69 1_555 -0.073 -1.869 3.589 3.791 10.895 31.702 -5.010 0.747 2.786 19.168 -6.670 33.685 2 AA_C2C3:G69G70_AA A 2 ? A 70 ? A 3 ? A 69 ? 1 A C 3 1_555 A G 69 1_555 A G 4 1_555 A C 68 1_555 0.241 -1.570 2.782 -1.395 14.204 24.273 -5.649 -0.734 1.616 30.626 3.008 28.104 3 AA_C3G4:C68G69_AA A 3 ? A 69 ? A 4 ? A 68 ? 1 A G 4 1_555 A C 68 1_555 A U 5 1_555 A G 67 1_555 0.325 -1.764 3.588 2.918 -2.100 44.531 -2.108 -0.130 3.676 -2.765 -3.843 44.669 4 AA_G4U5:G67C68_AA A 4 ? A 68 ? A 5 ? A 67 ? 1 A U 5 1_555 A G 67 1_555 A G 6 1_555 A C 66 1_555 0.150 -1.916 3.231 2.034 9.968 20.763 -7.778 0.235 2.103 25.758 -5.255 23.097 5 AA_U5G6:C66G67_AA A 5 ? A 67 ? A 6 ? A 66 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 0.351 -0.951 3.212 6.750 17.152 35.108 -3.291 0.222 2.524 26.315 -10.356 39.517 6 AA_G6A7:U65C66_AA A 6 ? A 66 ? A 7 ? A 65 ? 1 A A 7 1_555 A U 65 1_555 A 5MC 48 1_555 A G 64 1_555 0.199 -1.206 3.106 3.197 12.285 32.997 -3.610 0.093 2.519 20.700 -5.387 35.291 7 AA_A75MC48:G64U65_AA A 7 ? A 65 ? A 48 ? A 64 ? 1 A 5MC 48 1_555 A G 64 1_555 A G 49 1_555 A C 63 1_555 -0.421 -2.046 2.611 -7.121 15.114 30.814 -4.949 -0.027 1.530 26.171 12.330 34.956 8 AA_5MC48G49:C63G64_AA A 48 ? A 64 ? A 49 ? A 63 ? 1 A G 49 1_555 A C 63 1_555 A G 50 1_555 A C 62 1_555 0.202 -1.752 3.367 -3.184 8.503 32.445 -4.358 -0.848 2.799 14.859 5.565 33.659 9 AA_G49G50:C62C63_AA A 49 ? A 63 ? A 50 ? A 62 ? 1 A G 50 1_555 A C 62 1_555 A G 51 1_555 A C 61 1_555 -0.085 -1.565 3.552 -1.149 8.036 44.981 -2.752 0.004 3.242 10.403 1.487 45.671 10 AA_G50G51:C61C62_AA A 50 ? A 62 ? A 51 ? A 61 ? 1 A G 51 1_555 A C 61 1_555 A G 52 1_555 A C 60 1_555 0.102 -2.600 3.409 -0.092 -5.387 21.013 -4.473 -0.314 3.942 -14.467 0.248 21.685 11 AA_G51G52:C60C61_AA A 51 ? A 61 ? A 52 ? A 60 ? 1 A G 52 1_555 A C 60 1_555 A 5MU 53 1_555 A A 57 1_555 -2.159 -2.545 3.143 3.712 -5.749 85.766 -1.741 1.664 3.199 -4.218 -2.724 85.986 12 AA_G525MU53:A57C60_AA A 52 ? A 60 ? A 53 ? A 57 ? 1 A 5MU 53 1_555 A A 57 1_555 A PSU 54 1_555 A G 17 1_555 1.043 -2.131 3.493 6.781 6.758 55.548 -2.660 -0.702 3.330 7.191 -7.216 56.302 13 AA_5MU53PSU54:G17A57_AA A 53 ? A 57 ? A 54 ? A 17 ? 1 A C 38 1_555 A PSU 32 1_555 A G 39 1_555 A C 31 1_555 0.750 -1.227 3.583 -12.999 -1.829 47.733 -1.321 -1.938 3.326 -2.212 15.719 49.403 14 AA_C38G39:C31PSU32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A G 39 1_555 A C 31 1_555 A U 40 1_555 A G 30 1_555 -0.193 -1.246 3.581 6.372 -0.835 43.303 -1.584 0.925 3.541 -1.124 -8.579 43.755 15 AA_G39U40:G30C31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A U 40 1_555 A G 30 1_555 A G 41 1_555 A C 29 1_555 -0.371 -2.646 2.842 -3.211 6.660 17.188 -10.740 -0.110 1.742 21.063 10.156 18.700 16 AA_U40G41:C29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A G 41 1_555 A C 29 1_555 A C 42 1_555 A G 28 1_555 -0.525 -1.492 3.105 2.729 0.379 35.577 -2.487 1.229 3.042 0.619 -4.458 35.680 17 AA_G41C42:G28C29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A C 42 1_555 A G 28 1_555 A C 43 1_555 A G 27 1_555 0.278 -1.565 3.470 1.770 4.024 37.778 -2.934 -0.193 3.301 6.189 -2.722 38.023 18 AA_C42C43:G27G28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A C 43 1_555 A G 27 1_555 A A 44 1_555 A G 26 1_555 -0.706 -1.672 3.353 9.717 13.663 30.977 -4.603 2.474 2.143 23.544 -16.745 35.126 19 AA_C43A44:G26G27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 44 1_555 A G 26 1_555 A G 10 1_555 A U 25 1_555 -3.099 -2.870 2.908 5.297 18.786 55.755 -3.624 3.353 1.670 19.437 -5.481 58.813 20 AA_A44G10:U25G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A U 25 1_555 A U 11 1_555 A A 24 1_555 -0.482 -1.545 3.512 -1.540 2.835 44.768 -2.297 0.483 3.427 3.716 2.018 44.878 21 AA_G10U11:A24U25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A U 11 1_555 A A 24 1_555 A U 12 1_555 A A 23 1_555 -0.387 -1.417 3.239 -1.797 13.558 34.152 -3.949 0.389 2.530 22.022 2.918 36.713 22 AA_U11U12:A23A24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A PSU 13 1_555 A G 22 1_555 0.512 -2.372 3.149 -5.108 -1.996 23.251 -5.097 -2.866 3.155 -4.866 12.454 23.880 23 AA_U12PSU13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A PSU 13 1_555 A G 22 1_555 A A 14 1_555 A A 21 1_555 3.304 -3.481 3.465 10.771 -0.396 2.136 -17.001 14.898 4.039 -2.895 -78.770 10.987 24 AA_PSU13A14:A21G22_AA A 13 ? A 22 ? A 14 ? A 21 ? 1 A A 14 1_555 A A 21 1_555 A A 15 1_555 A U 47 1_555 -1.576 0.045 3.220 -6.746 10.667 -15.963 -4.437 -7.192 1.991 -32.570 -20.597 -20.324 25 AA_A14A15:U47A21_AA A 14 ? A 21 ? A 15 ? A 47 ? # _atom_sites.entry_id 3TRA _atom_sites.fract_transf_matrix[1][1] 0.016584 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000070 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006689 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_