data_3TRE # _entry.id 3TRE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TRE pdb_00003tre 10.2210/pdb3tre/pdb RCSB RCSB067827 ? ? WWPDB D_1000067827 ? ? # _pdbx_database_status.entry_id 3TRE _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-09 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cheung, J.' 1 'Franklin, M.C.' 2 'Rudolph, M.' 3 'Cassidy, M.' 4 'Gary, E.' 5 'Burshteyn, F.' 6 'Love, J.' 7 # _citation.id primary _citation.title 'Structural genomics for drug design against the pathogen Coxiella burnetii.' _citation.journal_abbrev Proteins _citation.journal_volume 83 _citation.page_first 2124 _citation.page_last 2136 _citation.year 2015 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26033498 _citation.pdbx_database_id_DOI 10.1002/prot.24841 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Franklin, M.C.' 1 ? primary 'Cheung, J.' 2 ? primary 'Rudolph, M.J.' 3 ? primary 'Burshteyn, F.' 4 ? primary 'Cassidy, M.' 5 ? primary 'Gary, E.' 6 ? primary 'Hillerich, B.' 7 ? primary 'Yao, Z.K.' 8 ? primary 'Carlier, P.R.' 9 ? primary 'Totrov, M.' 10 ? primary 'Love, J.D.' 11 ? # _cell.length_a 82.619 _cell.length_b 82.619 _cell.length_c 79.096 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3TRE _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63' _symmetry.entry_id 3TRE _symmetry.Int_Tables_number 173 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Elongation factor P' _entity.formula_weight 21626.547 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name EF-P # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)ATHSTNEFRGGLKV(MSE)VDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVE VE(MSE)QYLYNDGEFWHF(MSE)TSENYEQHAASKEAVAEAKQWLKEEALC(MSE)VT(MSE)WNGVPLSVEPPNFVEL KITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYN DGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLE TGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 THR n 1 7 HIS n 1 8 SER n 1 9 THR n 1 10 ASN n 1 11 GLU n 1 12 PHE n 1 13 ARG n 1 14 GLY n 1 15 GLY n 1 16 LEU n 1 17 LYS n 1 18 VAL n 1 19 MSE n 1 20 VAL n 1 21 ASP n 1 22 GLY n 1 23 ASP n 1 24 PRO n 1 25 CYS n 1 26 SER n 1 27 ILE n 1 28 ILE n 1 29 ASP n 1 30 ASN n 1 31 GLU n 1 32 PHE n 1 33 VAL n 1 34 LYS n 1 35 PRO n 1 36 GLY n 1 37 LYS n 1 38 GLY n 1 39 GLN n 1 40 ALA n 1 41 PHE n 1 42 ASN n 1 43 ARG n 1 44 VAL n 1 45 LYS n 1 46 PHE n 1 47 ARG n 1 48 ASN n 1 49 LEU n 1 50 LYS n 1 51 THR n 1 52 GLY n 1 53 ARG n 1 54 VAL n 1 55 LEU n 1 56 GLU n 1 57 ARG n 1 58 THR n 1 59 PHE n 1 60 LYS n 1 61 SER n 1 62 GLY n 1 63 GLU n 1 64 THR n 1 65 LEU n 1 66 PRO n 1 67 ALA n 1 68 ALA n 1 69 ASP n 1 70 VAL n 1 71 VAL n 1 72 GLU n 1 73 VAL n 1 74 GLU n 1 75 MSE n 1 76 GLN n 1 77 TYR n 1 78 LEU n 1 79 TYR n 1 80 ASN n 1 81 ASP n 1 82 GLY n 1 83 GLU n 1 84 PHE n 1 85 TRP n 1 86 HIS n 1 87 PHE n 1 88 MSE n 1 89 THR n 1 90 SER n 1 91 GLU n 1 92 ASN n 1 93 TYR n 1 94 GLU n 1 95 GLN n 1 96 HIS n 1 97 ALA n 1 98 ALA n 1 99 SER n 1 100 LYS n 1 101 GLU n 1 102 ALA n 1 103 VAL n 1 104 ALA n 1 105 GLU n 1 106 ALA n 1 107 LYS n 1 108 GLN n 1 109 TRP n 1 110 LEU n 1 111 LYS n 1 112 GLU n 1 113 GLU n 1 114 ALA n 1 115 LEU n 1 116 CYS n 1 117 MSE n 1 118 VAL n 1 119 THR n 1 120 MSE n 1 121 TRP n 1 122 ASN n 1 123 GLY n 1 124 VAL n 1 125 PRO n 1 126 LEU n 1 127 SER n 1 128 VAL n 1 129 GLU n 1 130 PRO n 1 131 PRO n 1 132 ASN n 1 133 PHE n 1 134 VAL n 1 135 GLU n 1 136 LEU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 GLU n 1 141 THR n 1 142 GLU n 1 143 PRO n 1 144 GLY n 1 145 VAL n 1 146 ARG n 1 147 GLY n 1 148 ASP n 1 149 THR n 1 150 ALA n 1 151 THR n 1 152 GLY n 1 153 GLY n 1 154 THR n 1 155 LYS n 1 156 ARG n 1 157 ALA n 1 158 LYS n 1 159 LEU n 1 160 GLU n 1 161 THR n 1 162 GLY n 1 163 ALA n 1 164 VAL n 1 165 VAL n 1 166 ARG n 1 167 VAL n 1 168 PRO n 1 169 LEU n 1 170 PHE n 1 171 LEU n 1 172 ASN n 1 173 GLU n 1 174 GLY n 1 175 GLU n 1 176 ILE n 1 177 ILE n 1 178 LYS n 1 179 VAL n 1 180 ASP n 1 181 THR n 1 182 ARG n 1 183 ARG n 1 184 GLY n 1 185 GLU n 1 186 TYR n 1 187 VAL n 1 188 SER n 1 189 ARG n 1 190 ALA n 1 191 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CBU_1816, efp' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RSA493 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Coxiella burnetii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 777 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EFP_COXBU _struct_ref.pdbx_db_accession Q83AR4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE FWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGA VVRVPLFLNEGEIIKVDTRRGEYVSRAK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TRE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q83AR4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 188 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 188 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TRE SER A 1 ? UNP Q83AR4 ? ? 'expression tag' -2 1 1 3TRE ASN A 2 ? UNP Q83AR4 ? ? 'expression tag' -1 2 1 3TRE ALA A 3 ? UNP Q83AR4 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3TRE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.60 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;0.05M potassium thiocyanate 16% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3TRE _reflns.d_resolution_high 2.899 _reflns.d_resolution_low 50.000 _reflns.number_obs ? _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 11.600 _reflns.pdbx_chi_squared 0.947 _reflns.pdbx_redundancy 2.800 _reflns.percent_possible_obs 98.800 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.number_all 13462 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.900 2.950 ? ? ? 0.531 ? ? 0.376 2.400 ? 702 99.900 1 1 2.950 3.000 ? ? ? 0.353 ? ? 0.418 2.400 ? 673 99.900 2 1 3.000 3.060 ? ? ? 0.277 ? ? 0.405 2.400 ? 673 99.300 3 1 3.060 3.120 ? ? ? 0.218 ? ? 0.407 2.400 ? 643 100.000 4 1 3.120 3.190 ? ? ? 0.173 ? ? 0.472 2.400 ? 686 100.000 5 1 3.190 3.270 ? ? ? 0.134 ? ? 0.491 2.400 ? 691 99.400 6 1 3.270 3.350 ? ? ? 0.126 ? ? 0.568 2.400 ? 627 99.800 7 1 3.350 3.440 ? ? ? 0.119 ? ? 0.773 2.400 ? 664 96.700 8 1 3.440 3.540 ? ? ? 0.105 ? ? 0.916 2.400 ? 653 98.600 9 1 3.540 3.650 ? ? ? 0.084 ? ? 1.010 2.400 ? 670 99.600 10 1 3.650 3.780 ? ? ? 0.072 ? ? 1.124 2.400 ? 643 95.300 11 1 3.780 3.940 ? ? ? 0.074 ? ? 1.336 2.300 ? 645 94.000 12 1 3.940 4.110 ? ? ? 0.042 ? ? 1.107 2.400 ? 649 99.400 13 1 4.110 4.330 ? ? ? 0.036 ? ? 1.130 2.400 ? 673 99.100 14 1 4.330 4.600 ? ? ? 0.034 ? ? 1.316 2.400 ? 661 99.500 15 1 4.600 4.960 ? ? ? 0.033 ? ? 1.270 2.400 ? 695 99.300 16 1 4.960 5.460 ? ? ? 0.096 ? ? 1.220 4.400 ? 659 100.000 17 1 5.460 6.240 ? ? ? 0.098 ? ? 1.032 4.700 ? 650 99.700 18 1 6.240 7.860 ? ? ? 0.075 ? ? 1.012 4.600 ? 682 100.000 19 1 7.860 50.000 ? ? ? 0.053 ? ? 1.437 4.100 ? 662 97.200 20 1 # _refine.entry_id 3TRE _refine.ls_d_res_high 2.8990 _refine.ls_d_res_low 41.3100 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.4400 _refine.ls_number_reflns_obs 6869 _refine.ls_number_reflns_all 7236 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.2371 _refine.ls_R_factor_obs 0.2371 _refine.ls_R_factor_R_work 0.2354 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2714 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7600 _refine.ls_number_reflns_R_free 327 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 102.8239 _refine.solvent_model_param_bsol 56.3000 _refine.solvent_model_param_ksol 0.2800 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.3400 _refine.aniso_B[2][2] -2.3400 _refine.aniso_B[3][3] 4.6800 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.3000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.0600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1YBY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7507 _refine.B_iso_max 263.950 _refine.B_iso_min 38.710 _refine.pdbx_overall_phase_error 31.1100 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1029 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1029 _refine_hist.d_res_high 2.8990 _refine_hist.d_res_low 41.3100 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1054 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1425 1.198 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 150 0.078 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 187 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 387 16.681 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.8987 _refine_ls_shell.d_res_low 3.6517 _refine_ls_shell.pdbx_total_number_of_bins_used 2 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 3243 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2548 _refine_ls_shell.R_factor_R_free 0.2895 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 179 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3422 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3TRE _struct.title 'Structure of a translation elongation factor P (efp) from Coxiella burnetii' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TRE _struct_keywords.text 'Protein synthesis, TRANSLATION' _struct_keywords.pdbx_keywords TRANSLATION # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 10 ? PHE A 12 ? ASN A 7 PHE A 9 5 ? 3 HELX_P HELX_P2 2 SER A 99 ? ALA A 104 ? SER A 96 ALA A 101 1 ? 6 HELX_P HELX_P3 3 GLU A 105 ? LEU A 110 ? GLU A 102 LEU A 107 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 18 C ? ? ? 1_555 A MSE 19 N ? ? A VAL 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 19 C ? ? ? 1_555 A VAL 20 N ? ? A MSE 16 A VAL 17 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A GLU 74 C ? ? ? 1_555 A MSE 75 N ? ? A GLU 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 75 C ? ? ? 1_555 A GLN 76 N ? ? A MSE 72 A GLN 73 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A PHE 87 C ? ? ? 1_555 A MSE 88 N ? ? A PHE 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 88 C ? ? ? 1_555 A THR 89 N ? ? A MSE 85 A THR 86 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A CYS 116 C ? ? ? 1_555 A MSE 117 N ? ? A CYS 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale8 covale both ? A MSE 117 C ? ? ? 1_555 A VAL 118 N ? ? A MSE 114 A VAL 115 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A THR 119 C ? ? ? 1_555 A MSE 120 N ? ? A THR 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? A MSE 120 C ? ? ? 1_555 A TRP 121 N ? ? A MSE 117 A TRP 118 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 7 ? SER A 8 ? HIS A 4 SER A 5 A 2 THR A 64 ? LEU A 65 ? THR A 61 LEU A 62 B 1 LYS A 17 ? VAL A 20 ? LYS A 14 VAL A 17 B 2 ASP A 23 ? VAL A 33 ? ASP A 20 VAL A 30 B 3 PHE A 41 ? ASN A 48 ? PHE A 38 ASN A 45 B 4 VAL A 54 ? LYS A 60 ? VAL A 51 LYS A 57 C 1 GLN A 95 ? ALA A 98 ? GLN A 92 ALA A 95 C 2 TRP A 85 ? THR A 89 ? TRP A 82 THR A 86 C 3 VAL A 70 ? ASN A 80 ? VAL A 67 ASN A 77 C 4 LEU A 115 ? TRP A 121 ? LEU A 112 TRP A 118 C 5 VAL A 124 ? GLU A 129 ? VAL A 121 GLU A 126 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 7 ? N HIS A 4 O LEU A 65 ? O LEU A 62 B 1 2 N VAL A 20 ? N VAL A 17 O ASP A 23 ? O ASP A 20 B 2 3 N SER A 26 ? N SER A 23 O ARG A 47 ? O ARG A 44 B 3 4 N PHE A 46 ? N PHE A 43 O LEU A 55 ? O LEU A 52 C 1 2 O HIS A 96 ? O HIS A 93 N PHE A 87 ? N PHE A 84 C 2 3 O HIS A 86 ? O HIS A 83 N LEU A 78 ? N LEU A 75 C 3 4 N MSE A 75 ? N MSE A 72 O CYS A 116 ? O CYS A 113 C 4 5 N THR A 119 ? N THR A 116 O LEU A 126 ? O LEU A 123 # _atom_sites.entry_id 3TRE _atom_sites.fract_transf_matrix[1][1] 0.012104 _atom_sites.fract_transf_matrix[1][2] 0.006988 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013976 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012643 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 HIS 7 4 4 HIS HIS A . n A 1 8 SER 8 5 5 SER SER A . n A 1 9 THR 9 6 6 THR THR A . n A 1 10 ASN 10 7 7 ASN ASN A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 GLY 14 11 11 GLY GLY A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 LYS 17 14 14 LYS LYS A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 MSE 19 16 16 MSE MSE A . n A 1 20 VAL 20 17 17 VAL VAL A . n A 1 21 ASP 21 18 18 ASP ASP A . n A 1 22 GLY 22 19 19 GLY GLY A . n A 1 23 ASP 23 20 20 ASP ASP A . n A 1 24 PRO 24 21 21 PRO PRO A . n A 1 25 CYS 25 22 22 CYS CYS A . n A 1 26 SER 26 23 23 SER SER A . n A 1 27 ILE 27 24 24 ILE ILE A . n A 1 28 ILE 28 25 25 ILE ILE A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 ASN 30 27 27 ASN ASN A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 PHE 32 29 29 PHE PHE A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 PRO 35 32 32 PRO PRO A . n A 1 36 GLY 36 33 33 GLY GLY A . n A 1 37 LYS 37 34 34 LYS LYS A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 GLN 39 36 36 GLN GLN A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 PHE 41 38 38 PHE PHE A . n A 1 42 ASN 42 39 39 ASN ASN A . n A 1 43 ARG 43 40 40 ARG ARG A . n A 1 44 VAL 44 41 41 VAL VAL A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 PHE 46 43 43 PHE PHE A . n A 1 47 ARG 47 44 44 ARG ARG A . n A 1 48 ASN 48 45 45 ASN ASN A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 LYS 50 47 47 LYS LYS A . n A 1 51 THR 51 48 48 THR THR A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 GLU 56 53 53 GLU GLU A . n A 1 57 ARG 57 54 54 ARG ARG A . n A 1 58 THR 58 55 55 THR THR A . n A 1 59 PHE 59 56 56 PHE PHE A . n A 1 60 LYS 60 57 57 LYS LYS A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 THR 64 61 61 THR THR A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 PRO 66 63 63 PRO PRO A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 ASP 69 66 66 ASP ASP A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 MSE 75 72 72 MSE MSE A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 TYR 77 74 74 TYR TYR A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 TYR 79 76 76 TYR TYR A . n A 1 80 ASN 80 77 77 ASN ASN A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 GLY 82 79 79 GLY GLY A . n A 1 83 GLU 83 80 80 GLU GLU A . n A 1 84 PHE 84 81 81 PHE PHE A . n A 1 85 TRP 85 82 82 TRP TRP A . n A 1 86 HIS 86 83 83 HIS HIS A . n A 1 87 PHE 87 84 84 PHE PHE A . n A 1 88 MSE 88 85 85 MSE MSE A . n A 1 89 THR 89 86 86 THR THR A . n A 1 90 SER 90 87 87 SER SER A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 ASN 92 89 89 ASN ASN A . n A 1 93 TYR 93 90 90 TYR TYR A . n A 1 94 GLU 94 91 91 GLU GLU A . n A 1 95 GLN 95 92 92 GLN GLN A . n A 1 96 HIS 96 93 93 HIS HIS A . n A 1 97 ALA 97 94 94 ALA ALA A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 SER 99 96 96 SER SER A . n A 1 100 LYS 100 97 97 LYS LYS A . n A 1 101 GLU 101 98 98 GLU GLU A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 VAL 103 100 100 VAL VAL A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 GLU 105 102 102 GLU GLU A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 LYS 107 104 104 LYS LYS A . n A 1 108 GLN 108 105 105 GLN GLN A . n A 1 109 TRP 109 106 106 TRP TRP A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 LYS 111 108 108 LYS LYS A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 GLU 113 110 110 GLU GLU A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 LEU 115 112 112 LEU LEU A . n A 1 116 CYS 116 113 113 CYS CYS A . n A 1 117 MSE 117 114 114 MSE MSE A . n A 1 118 VAL 118 115 115 VAL VAL A . n A 1 119 THR 119 116 116 THR THR A . n A 1 120 MSE 120 117 117 MSE MSE A . n A 1 121 TRP 121 118 118 TRP TRP A . n A 1 122 ASN 122 119 119 ASN ASN A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 PRO 125 122 122 PRO PRO A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 SER 127 124 124 SER SER A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 GLU 129 126 126 GLU GLU A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 PRO 131 128 128 PRO PRO A . n A 1 132 ASN 132 129 129 ASN ASN A . n A 1 133 PHE 133 130 130 PHE PHE A . n A 1 134 VAL 134 131 131 VAL VAL A . n A 1 135 GLU 135 132 ? ? ? A . n A 1 136 LEU 136 133 ? ? ? A . n A 1 137 LYS 137 134 ? ? ? A . n A 1 138 ILE 138 135 ? ? ? A . n A 1 139 THR 139 136 ? ? ? A . n A 1 140 GLU 140 137 ? ? ? A . n A 1 141 THR 141 138 ? ? ? A . n A 1 142 GLU 142 139 ? ? ? A . n A 1 143 PRO 143 140 ? ? ? A . n A 1 144 GLY 144 141 ? ? ? A . n A 1 145 VAL 145 142 ? ? ? A . n A 1 146 ARG 146 143 ? ? ? A . n A 1 147 GLY 147 144 ? ? ? A . n A 1 148 ASP 148 145 ? ? ? A . n A 1 149 THR 149 146 ? ? ? A . n A 1 150 ALA 150 147 ? ? ? A . n A 1 151 THR 151 148 ? ? ? A . n A 1 152 GLY 152 149 ? ? ? A . n A 1 153 GLY 153 150 ? ? ? A . n A 1 154 THR 154 151 ? ? ? A . n A 1 155 LYS 155 152 ? ? ? A . n A 1 156 ARG 156 153 ? ? ? A . n A 1 157 ALA 157 154 ? ? ? A . n A 1 158 LYS 158 155 ? ? ? A . n A 1 159 LEU 159 156 ? ? ? A . n A 1 160 GLU 160 157 ? ? ? A . n A 1 161 THR 161 158 ? ? ? A . n A 1 162 GLY 162 159 ? ? ? A . n A 1 163 ALA 163 160 ? ? ? A . n A 1 164 VAL 164 161 ? ? ? A . n A 1 165 VAL 165 162 ? ? ? A . n A 1 166 ARG 166 163 ? ? ? A . n A 1 167 VAL 167 164 ? ? ? A . n A 1 168 PRO 168 165 ? ? ? A . n A 1 169 LEU 169 166 ? ? ? A . n A 1 170 PHE 170 167 ? ? ? A . n A 1 171 LEU 171 168 ? ? ? A . n A 1 172 ASN 172 169 ? ? ? A . n A 1 173 GLU 173 170 ? ? ? A . n A 1 174 GLY 174 171 ? ? ? A . n A 1 175 GLU 175 172 ? ? ? A . n A 1 176 ILE 176 173 ? ? ? A . n A 1 177 ILE 177 174 ? ? ? A . n A 1 178 LYS 178 175 ? ? ? A . n A 1 179 VAL 179 176 ? ? ? A . n A 1 180 ASP 180 177 ? ? ? A . n A 1 181 THR 181 178 ? ? ? A . n A 1 182 ARG 182 179 ? ? ? A . n A 1 183 ARG 183 180 ? ? ? A . n A 1 184 GLY 184 181 ? ? ? A . n A 1 185 GLU 185 182 ? ? ? A . n A 1 186 TYR 186 183 ? ? ? A . n A 1 187 VAL 187 184 ? ? ? A . n A 1 188 SER 188 185 ? ? ? A . n A 1 189 ARG 189 186 ? ? ? A . n A 1 190 ALA 190 187 ? ? ? A . n A 1 191 LYS 191 188 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 19 A MSE 16 ? MET SELENOMETHIONINE 2 A MSE 75 A MSE 72 ? MET SELENOMETHIONINE 3 A MSE 88 A MSE 85 ? MET SELENOMETHIONINE 4 A MSE 117 A MSE 114 ? MET SELENOMETHIONINE 5 A MSE 120 A MSE 117 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-28 2 'Structure model' 1 1 2015-06-24 3 'Structure model' 1 2 2016-01-20 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2023-09-13 6 'Structure model' 1 5 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 6 'Structure model' '_chem_comp_atom.atom_id' 6 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 46.3032 -10.0211 7.1447 0.7592 0.4718 0.5204 0.0287 0.0341 0.1401 0.3256 2.1422 0.9279 -0.5824 0.2579 0.0618 0.3866 0.1776 0.0022 0.1336 0.7050 -0.0411 -0.2006 0.3159 0.1076 'X-RAY DIFFRACTION' 2 ? refined 45.5219 -16.3298 8.3324 0.6165 0.3690 0.4708 0.0444 0.0600 0.0962 1.1582 1.3134 1.5015 1.1486 -1.3484 -1.2993 0.2378 0.1158 0.0025 0.0910 -0.0298 -0.0790 -0.1192 0.0051 0.5581 'X-RAY DIFFRACTION' 3 ? refined 38.0676 3.1177 -9.9284 0.8803 0.4432 0.8983 0.0280 0.3461 0.1735 0.9641 0.7053 1.5115 -0.7743 0.7732 -0.3465 0.6879 0.2318 0.1146 -1.0438 -0.6409 1.3142 0.0764 0.9156 -1.0035 'X-RAY DIFFRACTION' 4 ? refined 38.6218 3.3327 -18.8280 1.0767 0.2908 0.2954 -0.1873 -0.1213 0.4652 0.6517 1.1786 1.1694 0.4638 -0.3152 0.0046 -0.3811 0.0374 -0.4504 0.2638 -0.0991 0.2881 0.0422 0.9305 0.0858 'X-RAY DIFFRACTION' 5 ? refined 35.7680 -5.7767 -16.1710 0.9851 0.3616 1.4395 0.0206 0.1118 0.2932 0.5633 0.2144 4.1407 0.3304 -0.1638 0.2871 0.3439 0.0100 0.3476 -0.2418 -0.3129 0.9659 -0.3498 0.2437 0.1160 'X-RAY DIFFRACTION' 6 ? refined 35.5189 1.1182 -12.1925 0.9087 0.9536 0.9918 -0.0189 0.1851 0.1093 1.2587 1.6114 0.4606 -0.2969 -0.3032 0.8017 -0.1154 -0.4699 -0.0273 1.3343 -1.9570 2.1960 1.2048 -0.0590 0.6598 'X-RAY DIFFRACTION' 7 ? refined 35.0116 -2.6653 -9.3906 0.8558 1.3209 1.1018 -0.0368 0.2818 0.2118 1.6237 0.7949 0.2890 -0.2198 -0.0117 0.4737 1.3297 -0.2177 0.0309 -2.7362 0.9288 -0.6299 0.3307 0.2375 -0.5551 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resseq 3:30) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resseq 31:66) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resseq 67:74) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resseq 75:91) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resseq 92:106) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 ;chain 'A' and (resseq 107:118) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 ;chain 'A' and (resseq 119:131) ; ? ? ? ? ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.7_650 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 34 ? ? 63.95 71.03 2 1 LEU A 75 ? ? -106.85 -69.50 3 1 GLU A 80 ? ? -106.65 -62.03 4 1 GLU A 88 ? ? -101.23 -71.89 5 1 ALA A 101 ? ? 63.45 -130.65 6 1 GLU A 110 ? ? 88.59 -3.23 7 1 ASN A 129 ? ? 52.92 -112.68 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A GLU 132 ? A GLU 135 7 1 Y 1 A LEU 133 ? A LEU 136 8 1 Y 1 A LYS 134 ? A LYS 137 9 1 Y 1 A ILE 135 ? A ILE 138 10 1 Y 1 A THR 136 ? A THR 139 11 1 Y 1 A GLU 137 ? A GLU 140 12 1 Y 1 A THR 138 ? A THR 141 13 1 Y 1 A GLU 139 ? A GLU 142 14 1 Y 1 A PRO 140 ? A PRO 143 15 1 Y 1 A GLY 141 ? A GLY 144 16 1 Y 1 A VAL 142 ? A VAL 145 17 1 Y 1 A ARG 143 ? A ARG 146 18 1 Y 1 A GLY 144 ? A GLY 147 19 1 Y 1 A ASP 145 ? A ASP 148 20 1 Y 1 A THR 146 ? A THR 149 21 1 Y 1 A ALA 147 ? A ALA 150 22 1 Y 1 A THR 148 ? A THR 151 23 1 Y 1 A GLY 149 ? A GLY 152 24 1 Y 1 A GLY 150 ? A GLY 153 25 1 Y 1 A THR 151 ? A THR 154 26 1 Y 1 A LYS 152 ? A LYS 155 27 1 Y 1 A ARG 153 ? A ARG 156 28 1 Y 1 A ALA 154 ? A ALA 157 29 1 Y 1 A LYS 155 ? A LYS 158 30 1 Y 1 A LEU 156 ? A LEU 159 31 1 Y 1 A GLU 157 ? A GLU 160 32 1 Y 1 A THR 158 ? A THR 161 33 1 Y 1 A GLY 159 ? A GLY 162 34 1 Y 1 A ALA 160 ? A ALA 163 35 1 Y 1 A VAL 161 ? A VAL 164 36 1 Y 1 A VAL 162 ? A VAL 165 37 1 Y 1 A ARG 163 ? A ARG 166 38 1 Y 1 A VAL 164 ? A VAL 167 39 1 Y 1 A PRO 165 ? A PRO 168 40 1 Y 1 A LEU 166 ? A LEU 169 41 1 Y 1 A PHE 167 ? A PHE 170 42 1 Y 1 A LEU 168 ? A LEU 171 43 1 Y 1 A ASN 169 ? A ASN 172 44 1 Y 1 A GLU 170 ? A GLU 173 45 1 Y 1 A GLY 171 ? A GLY 174 46 1 Y 1 A GLU 172 ? A GLU 175 47 1 Y 1 A ILE 173 ? A ILE 176 48 1 Y 1 A ILE 174 ? A ILE 177 49 1 Y 1 A LYS 175 ? A LYS 178 50 1 Y 1 A VAL 176 ? A VAL 179 51 1 Y 1 A ASP 177 ? A ASP 180 52 1 Y 1 A THR 178 ? A THR 181 53 1 Y 1 A ARG 179 ? A ARG 182 54 1 Y 1 A ARG 180 ? A ARG 183 55 1 Y 1 A GLY 181 ? A GLY 184 56 1 Y 1 A GLU 182 ? A GLU 185 57 1 Y 1 A TYR 183 ? A TYR 186 58 1 Y 1 A VAL 184 ? A VAL 187 59 1 Y 1 A SER 185 ? A SER 188 60 1 Y 1 A ARG 186 ? A ARG 189 61 1 Y 1 A ALA 187 ? A ALA 190 62 1 Y 1 A LYS 188 ? A LYS 191 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MSE N N N N 227 MSE CA C N S 228 MSE C C N N 229 MSE O O N N 230 MSE OXT O N N 231 MSE CB C N N 232 MSE CG C N N 233 MSE SE SE N N 234 MSE CE C N N 235 MSE H H N N 236 MSE H2 H N N 237 MSE HA H N N 238 MSE HXT H N N 239 MSE HB2 H N N 240 MSE HB3 H N N 241 MSE HG2 H N N 242 MSE HG3 H N N 243 MSE HE1 H N N 244 MSE HE2 H N N 245 MSE HE3 H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MSE N CA sing N N 216 MSE N H sing N N 217 MSE N H2 sing N N 218 MSE CA C sing N N 219 MSE CA CB sing N N 220 MSE CA HA sing N N 221 MSE C O doub N N 222 MSE C OXT sing N N 223 MSE OXT HXT sing N N 224 MSE CB CG sing N N 225 MSE CB HB2 sing N N 226 MSE CB HB3 sing N N 227 MSE CG SE sing N N 228 MSE CG HG2 sing N N 229 MSE CG HG3 sing N N 230 MSE SE CE sing N N 231 MSE CE HE1 sing N N 232 MSE CE HE2 sing N N 233 MSE CE HE3 sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YBY _pdbx_initial_refinement_model.details 'PDB ENTRY 1YBY' #