HEADER RNA BINDING PROTEIN/RNA 11-SEP-11 3TS0 TITLE MOUSE LIN28A IN COMPLEX WITH LET-7F-1 MICRORNA PRE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LIN-28 HOMOLOG A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIN-28A, TESTIS-EXPRESSED PROTEIN 17; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(*GP*GP*GP*GP*UP*AP*GP*UP*GP*AP*UP*UP*UP*UP*AP*CP*CP*CP*UP*GP*GP*AP* COMPND 9 G)-3'); COMPND 10 CHAIN: U, V; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PREE-LET-7F-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LIN28, LIN28A, TEX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: RNA OLIGONUCLEOTIDE KEYWDS MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KEYWDS 2 KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAM,P.SLIZ REVDAT 4 13-SEP-23 3TS0 1 REMARK SEQADV LINK REVDAT 3 14-DEC-11 3TS0 1 JRNL REVDAT 2 30-NOV-11 3TS0 1 JRNL REVDAT 1 16-NOV-11 3TS0 0 JRNL AUTH Y.NAM,C.CHEN,R.I.GREGORY,J.J.CHOU,P.SLIZ JRNL TITL MOLECULAR BASIS FOR INTERACTION OF LET-7 MICRORNAS WITH JRNL TITL 2 LIN28. JRNL REF CELL(CAMBRIDGE,MASS.) V. 147 1080 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 22078496 JRNL DOI 10.1016/J.CELL.2011.10.020 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2838 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2319 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2666 REMARK 3 BIN R VALUE (WORKING SET) : 0.2311 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2080 REMARK 3 NUCLEIC ACID ATOMS : 984 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.447 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.292 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3234 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4574 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1286 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 38 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 366 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3234 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 438 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3197 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.36 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.1657 32.2552 -12.3152 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: -0.0891 REMARK 3 T33: 0.1046 T12: 0.0761 REMARK 3 T13: -0.2571 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 1.2195 L22: 1.4692 REMARK 3 L33: 3.1297 L12: -0.7623 REMARK 3 L13: 0.5942 L23: -1.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.3293 S12: -0.0621 S13: 0.0604 REMARK 3 S21: 0.4454 S22: 0.0091 S23: -0.1584 REMARK 3 S31: -0.6005 S32: -0.3688 S33: 0.3202 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.9918 64.0283 -25.0023 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: 0.0050 REMARK 3 T33: 0.0537 T12: 0.0520 REMARK 3 T13: 0.0733 T23: 0.2555 REMARK 3 L TENSOR REMARK 3 L11: 1.0928 L22: 2.5974 REMARK 3 L33: 3.9896 L12: -1.1455 REMARK 3 L13: 1.5574 L23: -1.4871 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.2375 S13: 0.1395 REMARK 3 S21: 0.0214 S22: -0.3738 S23: -0.0890 REMARK 3 S31: 0.4350 S32: 0.5943 S33: 0.3780 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { U|* } REMARK 3 ORIGIN FOR THE GROUP (A): -26.9206 48.9467 -5.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: -0.0089 REMARK 3 T33: -0.0928 T12: 0.2900 REMARK 3 T13: -0.1284 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.6114 L22: 12.6921 REMARK 3 L33: 0.3030 L12: -2.7389 REMARK 3 L13: 0.4570 L23: -2.9075 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.3814 S13: 0.0963 REMARK 3 S21: 1.0302 S22: -0.1679 S23: 0.0237 REMARK 3 S31: -0.4669 S32: -0.0549 S33: 0.2319 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { V|* } REMARK 3 ORIGIN FOR THE GROUP (A): -26.6216 48.6159 -32.4273 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: -0.0539 REMARK 3 T33: -0.0506 T12: 0.2539 REMARK 3 T13: -0.0115 T23: 0.1303 REMARK 3 L TENSOR REMARK 3 L11: 10.5088 L22: 3.5438 REMARK 3 L33: 0.1417 L12: -5.0253 REMARK 3 L13: 2.7102 L23: -1.2624 REMARK 3 S TENSOR REMARK 3 S11: 0.1881 S12: 0.8567 S13: 0.0532 REMARK 3 S21: 0.2538 S22: -0.2996 S23: -0.2288 REMARK 3 S31: 0.1147 S32: 0.3788 S33: 0.1115 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22328 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.763 REMARK 200 RESOLUTION RANGE LOW (A) : 72.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : 0.62900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M NAH2PO4, 1.4M K2HPO4, PH 7, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.77500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.94000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.38750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.94000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.16250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.38750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.16250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THE CRYSTAL FORMS, THE AUTHORS OBSERVE A DOMAIN SWAP IN REMARK 300 WHICH THE LIN28 CSD INTERACTS WITH THE LOOP OF ONE MICRORNA REMARK 300 MOLECULE, AND THE CCHCX2 INTERACTS WITH THE GGAG OF A SECOND REMARK 300 MICRORNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, U, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 PRO A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 LYS A 187 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 PRO B 182 REMARK 465 SER B 183 REMARK 465 SER B 184 REMARK 465 GLN B 185 REMARK 465 GLY B 186 REMARK 465 LYS B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U U 19 O5' U U 19 C5' -0.055 REMARK 500 U V 19 O5' U V 19 C5' -0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U U 5 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 A U 6 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 U U 13 N1 - C1' - C2' ANGL. DEV. = 7.8 DEGREES REMARK 500 U U 19 C5' - C4' - C3' ANGL. DEV. = -12.6 DEGREES REMARK 500 U U 19 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 U V 5 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 A V 6 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 U V 19 C5' - C4' - C3' ANGL. DEV. = -12.8 DEGREES REMARK 500 U V 19 O4' - C1' - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 108.0 REMARK 620 3 HIS A 147 NE2 107.6 105.2 REMARK 620 4 CYS A 152 SG 110.6 116.8 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 161 SG REMARK 620 2 CYS A 164 SG 112.5 REMARK 620 3 HIS A 169 NE2 109.9 101.4 REMARK 620 4 CYS A 174 SG 111.0 115.4 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 CYS B 142 SG 99.3 REMARK 620 3 HIS B 147 NE2 101.0 106.5 REMARK 620 4 CYS B 152 SG 111.1 127.1 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 CYS B 164 SG 115.6 REMARK 620 3 HIS B 169 NE2 105.5 100.7 REMARK 620 4 CYS B 174 SG 108.3 114.5 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 DBREF 3TS0 A 33 187 UNP Q8K3Y3 LN28A_MOUSE 33 187 DBREF 3TS0 B 33 187 UNP Q8K3Y3 LN28A_MOUSE 33 187 DBREF 3TS0 U 1 23 PDB 3TS0 3TS0 1 23 DBREF 3TS0 V 1 23 PDB 3TS0 3TS0 1 23 SEQADV 3TS0 A UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS0 A UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS0 A UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS0 A UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS0 A UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS0 A UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS0 A UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS0 A UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS0 A UNP Q8K3Y3 LYS 135 DELETION SEQADV 3TS0 B UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS0 B UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS0 B UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS0 B UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS0 B UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS0 B UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS0 B UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS0 B UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS0 B UNP Q8K3Y3 LYS 135 DELETION SEQRES 1 A 146 ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE CYS LYS SEQRES 2 A 146 TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SER MET SEQRES 3 A 146 THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO VAL ASP SEQRES 4 A 146 VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU GLY PHE SEQRES 5 A 146 ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE THR PHE SEQRES 6 A 146 LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG VAL THR SEQRES 7 A 146 GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU ARG ARG SEQRES 8 A 146 PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY GLY LEU SEQRES 9 A 146 ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO GLN PRO SEQRES 10 A 146 LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS MET VAL SEQRES 11 A 146 ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SER SER SEQRES 12 A 146 GLN GLY LYS SEQRES 1 B 146 ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE CYS LYS SEQRES 2 B 146 TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SER MET SEQRES 3 B 146 THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO VAL ASP SEQRES 4 B 146 VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU GLY PHE SEQRES 5 B 146 ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE THR PHE SEQRES 6 B 146 LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG VAL THR SEQRES 7 B 146 GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU ARG ARG SEQRES 8 B 146 PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY GLY LEU SEQRES 9 B 146 ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO GLN PRO SEQRES 10 B 146 LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS MET VAL SEQRES 11 B 146 ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SER SER SEQRES 12 B 146 GLN GLY LYS SEQRES 1 U 23 GMP G G G U A G U G A U U U SEQRES 2 U 23 U A C C C U G G A G SEQRES 1 V 23 GMP G G G U A G U G A U U U SEQRES 2 V 23 U A C C C U G G A G HET GMP U 1 20 HET GMP V 1 20 HET ZN A 200 1 HET ZN A 201 1 HET ZN B 200 1 HET ZN B 201 1 HETNAM GMP GUANOSINE HETNAM ZN ZINC ION FORMUL 3 GMP 2(C10 H13 N5 O5) FORMUL 5 ZN 4(ZN 2+) HELIX 1 1 SER A 77 LEU A 79 5 3 HELIX 2 2 GLY A 111 VAL A 115 5 5 HELIX 3 3 MET A 170 CYS A 174 5 5 HELIX 4 4 SER B 77 LEU B 79 5 3 HELIX 5 5 GLY B 111 VAL B 115 5 5 HELIX 6 6 MET B 170 CYS B 174 5 5 SHEET 1 A 6 LEU A 38 ASN A 48 0 SHEET 2 A 6 PHE A 53 ARG A 61 -1 O SER A 57 N ILE A 43 SHEET 3 A 6 VAL A 64 HIS A 75 -1 O LEU A 66 N THR A 59 SHEET 4 A 6 GLY A 103 THR A 110 1 O SER A 106 N PHE A 73 SHEET 5 A 6 ALA A 92 SER A 100 -1 N SER A 100 O GLY A 103 SHEET 6 A 6 LEU A 38 ASN A 48 -1 N LEU A 38 O PHE A 97 SHEET 1 B 6 LEU B 38 ASN B 48 0 SHEET 2 B 6 PHE B 53 ARG B 61 -1 O SER B 57 N ILE B 43 SHEET 3 B 6 VAL B 64 HIS B 75 -1 O VAL B 72 N LEU B 56 SHEET 4 B 6 GLY B 103 THR B 110 1 O LEU B 104 N PHE B 73 SHEET 5 B 6 ALA B 92 SER B 100 -1 N SER B 100 O GLY B 103 SHEET 6 B 6 LEU B 38 ASN B 48 -1 N LEU B 38 O PHE B 97 LINK SG CYS A 139 ZN ZN A 200 1555 1555 2.40 LINK SG CYS A 142 ZN ZN A 200 1555 1555 2.17 LINK NE2 HIS A 147 ZN ZN A 200 1555 1555 2.45 LINK SG CYS A 152 ZN ZN A 200 1555 1555 2.15 LINK SG CYS A 161 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 164 ZN ZN A 201 1555 1555 2.25 LINK NE2 HIS A 169 ZN ZN A 201 1555 1555 1.93 LINK SG CYS A 174 ZN ZN A 201 1555 1555 2.30 LINK SG CYS B 139 ZN ZN B 200 1555 1555 2.45 LINK SG CYS B 142 ZN ZN B 200 1555 1555 2.31 LINK NE2 HIS B 147 ZN ZN B 200 1555 1555 2.43 LINK SG CYS B 152 ZN ZN B 200 1555 1555 2.19 LINK SG CYS B 161 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 164 ZN ZN B 201 1555 1555 2.27 LINK NE2 HIS B 169 ZN ZN B 201 1555 1555 1.95 LINK SG CYS B 174 ZN ZN B 201 1555 1555 2.29 CISPEP 1 ASP A 67 PRO A 68 0 5.24 CISPEP 2 ASP B 67 PRO B 68 0 5.02 SITE 1 AC1 4 CYS A 139 CYS A 142 HIS A 147 CYS A 152 SITE 1 AC2 4 CYS A 161 CYS A 164 HIS A 169 CYS A 174 SITE 1 AC3 4 CYS B 139 CYS B 142 HIS B 147 CYS B 152 SITE 1 AC4 4 CYS B 161 CYS B 164 HIS B 169 CYS B 174 CRYST1 139.880 139.880 85.550 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011689 0.00000 CONECT 732 3069 CONECT 758 3069 CONECT 792 3069 CONECT 831 3069 CONECT 902 3070 CONECT 929 3070 CONECT 970 3070 CONECT 1002 3070 CONECT 1773 3071 CONECT 1799 3071 CONECT 1833 3071 CONECT 1872 3071 CONECT 1943 3072 CONECT 1970 3072 CONECT 2011 3072 CONECT 2043 3072 CONECT 2083 2084 CONECT 2084 2083 2085 CONECT 2085 2084 2086 2087 CONECT 2086 2085 2091 CONECT 2087 2085 2088 2089 CONECT 2088 2087 CONECT 2089 2087 2090 2091 CONECT 2090 2089 CONECT 2091 2086 2089 2092 CONECT 2092 2091 2093 2102 CONECT 2093 2092 2094 CONECT 2094 2093 2095 CONECT 2095 2094 2096 2102 CONECT 2096 2095 2097 2098 CONECT 2097 2096 CONECT 2098 2096 2099 CONECT 2099 2098 2100 2101 CONECT 2100 2099 CONECT 2101 2099 2102 CONECT 2102 2092 2095 2101 CONECT 2576 2577 CONECT 2577 2576 2578 CONECT 2578 2577 2579 2580 CONECT 2579 2578 2584 CONECT 2580 2578 2581 2582 CONECT 2581 2580 CONECT 2582 2580 2583 2584 CONECT 2583 2582 CONECT 2584 2579 2582 2585 CONECT 2585 2584 2586 2595 CONECT 2586 2585 2587 CONECT 2587 2586 2588 CONECT 2588 2587 2589 2595 CONECT 2589 2588 2590 2591 CONECT 2590 2589 CONECT 2591 2589 2592 CONECT 2592 2591 2593 2594 CONECT 2593 2592 CONECT 2594 2592 2595 CONECT 2595 2585 2588 2594 CONECT 3069 732 758 792 831 CONECT 3070 902 929 970 1002 CONECT 3071 1773 1799 1833 1872 CONECT 3072 1943 1970 2011 2043 MASTER 431 0 6 6 12 0 4 6 3068 4 60 28 END